Epigenetic enzymes influenced by oxidative stress and hypoxia mimetic in osteoblasts are differentially expressed in patients with osteoporosis and osteoarthritis
Open accessAbstract
Epigenetic mechanisms including posttranslational histone modifications and DNA methylation are emerging as important determinants of bone homeostasis. With our case-control study we aimed to identify which chromatin-modifying enzymes could be involved in the pathology of postmenopausal osteoporosis and osteoarthritis while co-regulated by estrogens, oxidative stress and hypoxia. Gene expression of HAT1, KAT5, HDAC6, MBD1 and DNMT3A affected by oxidative stress and hypoxia in an in vitro qPCR screening step performed on an osteoblast cell line was analysed in trabecular bone tissue samples from 96 patients. Their expression was significantly reduced in patients with postmenopausal osteoporosis and osteoarthritis as compared to autopsy controls and significantly correlated with bone mineral density and several bone histomorphometry-derived parameters of bone quality and quantity as well as indicators of oxidative stress, RANK/RANKL/OPG system and angiogenesis. Furthermore, oxidative stress increased DNA methylation levels at the RANKL and OPG promoters while decreasing histone acetylation levels at these two genes. Our study is the first to show that higher expression of HAT1, HDAC6 and MBD1 is associated with superior quantity as well as quality of the bone tissue having a more favourable trabecular structure.
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HAT1 is a cytoplasmic histone deacetylase whose loss is associated with early onset ageing and mitochondrial defects, and whose expression is reduced under treatment with hypoxic agents.
“HAT1 (FC = −1.12, p = 0.05) is a cytoplasmic histone deacetylase, for which loss is associated with early onset ageing and mitochondrial defects [105], and for which expression is reduced under treatment with hypoxic agents [159].”
From Early onset senescence and cognitive impairment in a murine model of repeated mTBI (2021) · cites this paper as [159]
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Cites
Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method
Livak, K. J., & Schmittgen, T. D. (2001) · Methods · doi:10.1006/meth.2001.1262 · Cited by 180,860 · see citing works
An integrated encyclopedia of DNA elements in the human genome
The ENCODE Project Consortium (2012) · Nature · doi:10.1038/nature11247 · Cited by 18,072 · see citing works
Andersen, C. L., Jensen, J. L., & Ørntoft, T. F. (2004) · Cancer Research · doi:10.1158/0008-5472.can-04-0496 · Cited by 7,127 · see citing works
Mutation of the mouse klotho gene leads to a syndrome resembling ageing
Kuro-o, M., Matsumura, Y., Aizawa, H., Kawaguchi, H., Suga, T., Utsugi, T., Ohyama, Y., Kurabayashi, M., Kaname, T., Kume, E., et al. (1997) · Nature · doi:10.1038/36285 · Cited by 3,837 · see citing works
Haberland, M., Montgomery, R. L., & Olson, E. N. (2008) · Nature Reviews Genetics · doi:10.1038/nrg2485 · Cited by 2,541 · see citing works
Manolagas, S. C. (2010) · Endocrine Reviews · doi:10.1210/er.2009-0024 · Cited by 1,210 · see citing works
Epigenetics and gene expression
Gibney, E. R., & Nolan, C. M. (2010) · Heredity · doi:10.1038/hdy.2010.54 · Cited by 1,109 · see citing works
Estrogen Binding, Receptor mRNA, and Biologic Response in Osteoblast-Like Osteosarcoma Cells
Komm, B. S., Terpening, C., Benz, D., Graeme, K. A., Gallegos, A. C., Korc, M., Greene, G. L., O’Malley, B. W., & Haussler, M. R. (1988) · Science · doi:10.1126/science.3164526 · Cited by 812 · see citing works
Skeletal Involution by Age-associated Oxidative Stress and Its Acceleration by Loss of Sex Steroids
Almeida, M., Li, H., Martín-Millán, M., Plotkin, L. I., Stewart, S. A., Roberson, P. K., Kousteni, S., O’Brien, C. A., Bellido, T., PARFITT, A. M., et al. (2007) · Journal of Biological Chemistry · doi:10.1074/jbc.m702810200 · Cited by 707 · see citing works
Khosla, S., Melton, L. J., & Riggs, B. L. (2010) · Journal of Bone and Mineral Research · doi:10.1002/jbmr.262 · Cited by 338 · see citing works
Runx2 (Cbfa1, AML-3) Interacts with Histone Deacetylase 6 and Represses the p21 CIP1/WAF1 Promoter
Westendorf, J. J., Zaidi, S. K., Cascino, J. E., Kahler, R. A., van Wijnen, A. J., Lian, J. B., Yoshida, M., Stein, G. S., & Li, X. (2002) · Molecular and Cellular Biology · doi:10.1128/mcb.22.22.7982-7992.2002 · Cited by 319 · see citing works
Arnett, T. R. (2010) · Archives of Biochemistry and Biophysics · doi:10.1016/j.abb.2010.07.021 · Cited by 265 · see citing works
Oxidative Stress and Epigenetic Regulation in Ageing and Age-Related Diseases
Cencioni, C., Spallotta, F., Martelli, F., Valente, S., Mai, A., Zeiher, A., & Gaetano, C. (2013) · International Journal of Molecular Sciences · doi:10.3390/ijms140917643 · Cited by 218 · see citing works
Sundar, I. K., Yao, H., & Rahman, I. (2012) · Antioxidants and Redox Signaling · doi:10.1089/ars.2012.4863 · Cited by 196 · see citing works
Class IIb HDAC6 regulates endothelial cell migration and angiogenesis by deacetylation of cortactin
Kaluza, D., Krøll, J., Gesierich, S., Yao, T., Boon, R. A., Hergenreider, E., Tjwa, M., Rössig, L., Seto, E., Augustin, H. G., et al. (2011) · The EMBO Journal · doi:10.1038/emboj.2011.298 · Cited by 196 · see citing works
Nagarajan, P., Ge, Z., Sirbu, B. M., Doughty, C. A., Garcia, P. A. A., Schlederer, M., Annunziato, A. T., Cortez, D., Kenner, L., & Parthun, M. R. (2013) · PLoS Genetics · doi:10.1371/journal.pgen.1003518 · Cited by 118 · see citing works
Role of DNA methylation in the regulation of the RANKL-OPG system in human bone
Delgado-Calle, J., Sañudo, C., Fernández, A., García-Renedo, R., Fraga, M., & Riancho, J. (2012) · Epigenetics · doi:10.4161/epi.7.1.18753 · Cited by 118 · see citing works
Zhao, Q., Shen, X., Zhang, W., Zhu, G., Jin, Q., & Deng, L. (2011) · Bone · doi:10.1016/j.bone.2011.12.003 · Cited by 110 · see citing works
Chatterjee, T. K., Basford, J. E., Knoll, E., Tong, W. S., Blanco, V., Blomkalns, A. L., Rudich, S. M., Lentsch, A. B., Hui, D. Y., & Weintraub, N. L. (2013) · Diabetes · doi:10.2337/db13-1148 · Cited by 104 · see citing works
Oxidative stress in secondary osteoarthritis: from cartilage destruction to clinical presentation?
Ziskoven, C., Jäger, M., Zilkens, C., Bloch, W., Brixius, K., & Krauspe, R. (2010) · Orthopedic Reviews · doi:10.4081/or.2010.e23 · Cited by 100 · see citing works
Vrtačnik, P., Marc, J., & Ostanek, B. (2013) · Clinical Chemistry and Laboratory Medicine (CCLM) · doi:10.1515/cclm-2013-0770 · Cited by 95 · see citing works
Self-citationOxidative stress causes epigenetic alteration of CDX1 expression in colorectal cancer cells
Zhang, R., Kang, K. A., Kim, K. C., Na, S.-Y., Chang, W. Y., Kim, G., Kim, H. S., & Hyun, J. W. (2013) · Gene · doi:10.1016/j.gene.2013.04.024 · Cited by 94 · see citing works
Mahalingaiah, P. K. S., Ponnusamy, L., & Singh, K. P. (2016) · Oncotarget · doi:10.18632/oncotarget.12091 · Cited by 83 · see citing works
Klettner, A., & Roider, J. (2009) · Graefe's Archive for Clinical and Experimental Ophthalmology · doi:10.1007/s00417-009-1139-x · Cited by 74 · see citing works
Trošt, Z., Trebše, R., Preželj, J., Komadina, R., Logar, D. B., & Marc, J. (2009) · Bone · doi:10.1016/j.bone.2009.09.015 · Cited by 70 · see citing works
Self-citationDragojevič, J., Zupan, J., Haring, G., Herman, S., Komadina, R., & Marc, J. (2013) · Journal of Bone and Mineral Metabolism · doi:10.1007/s00774-013-0445-x · Cited by 44 · see citing works
Self-citationLiu, X., Tu, Y., Zhang, L., Qi, J., Ma, T., & Deng, L. (2013) · Cell Biochemistry and Biophysics · doi:10.1007/s12013-013-9780-8 · Cited by 42 · see citing works
Steroid receptors in human osteoblast-like cells
Etienne, M. C., Fischel, J., Milano, G. A., et al. (1990) · European Journal of Cancer and Clinical Oncology · doi:10.1016/0277-5379(90)90157-o · Cited by 39 · see citing works
Osteoblastogenesis and Adipogenesis Are Higher in Osteoarthritic than in Osteoporotic Bone Tissue
Dragojevič, J., Logar, D. B., Komadina, R., et al. (2011) · Archives of Medical Research · doi:10.1016/j.arcmed.2011.08.005 · Cited by 35 · see citing works
Zupan, J., Hof, R. V., Vindišar, F., et al. (2013) · Journal of Orthopaedic Research® · doi:10.1002/jor.22318 · Cited by 24 · see citing works
Self-citationVrtačnik, P., Marc, J., & Ostanek, B. (2015) · Connective Tissue Research · doi:10.3109/03008207.2015.1017573 · Cited by 19 · see citing works
Self-citationImmunocytochemical detection of estrogen receptors in bone cells using flow cytometry
Štulc, T., Klement, D., Kvasnička, J., et al. (1997) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/s0167-4889(96)00152-8 · Cited by 9 · see citing works
Semi-automated histomorphometry of bone resorption parameters
Hof, R. V., & Landao-Basonga, E. (2011) · Bone · doi:10.1016/j.bone.2011.03.278 · Cited by 3 · see citing works
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Early onset senescence and cognitive impairment in a murine model of repeated mTBI
Schwab, N., Ju, Y., & Hazrati, L.-N. (2021) · Acta Neuropathologica Communications · doi:10.1186/s40478-021-01190-x · Cited by 39 · see citing works
Application of Antioxidant Compounds in Bone Defect Repair
Wang, J., Zhang, Y., Tang, Q., Zhang, Y., Yin, Y., & Chen, L. (2024) · Antioxidants · doi:10.3390/antiox13070789 · Cited by 39 · see citing works
- Authors
- Vrtačnik, P., Zupan, J., Mlakar, V., Kranjc, T., Marc, J., Kern, B., & Ostanek, B.
- Affiliations
- University of Ljubljana (SI)
- Corresponding author
- Ostanek, Barbara
- Venue
- Scientific Reports
- Published
- 2018-11-01
- Volume
- 8
- Issue
- 1
- Pages
- 16215-16215
- ISSN
- 2045-2322 (ISSN-L)
- PMC
- PMC6212423
- OpenAlex
- W2898532909
- Cited by
- 39
- References
- 33
- Citations by year
- 2026: 1 · 2025: 1 · 2024: 4 · 2023: 7 · 2022: 4 · 2021: 11 · 2020: 7 · 2019: 4
- FWCI
- 5.97
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- Scientific Reports (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Repository of the University of Ljubljana (University of Ljubljana) (publishedVersion, cc-by)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion)
- Funders
- Javna Agencija za Raziskovalno Dejavnost RS (ARMR19, P3-0298, J3-5511)
- Topics
- Health Sciences › Medicine › Orthopedics and Sports Medicine › Bone health and osteoporosis research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Bone Metabolism and Diseases
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
- Keywords
- epigenetic enzymes, osteoporosis, osteoarthritis, postmenopausal osteoporosis, osteoblasts, oxidative stress, hypoxia, histone acetylation, histone deacetylase, DNA methylation, HAT1, KAT5, HDAC6, MBD1, DNMT3A, RANKL, OPG, bone mineral density, trabecular bone histomorphometry, angiogenesis, estrogen
- MeSH terms
- Acetylation, Hypoxia, Bone and Bones, Cell Line, Chromatin, Deferoxamine, Estradiol, Female, Gene Expression Regulation, Histones, Humans, Hydrogen Peroxide, Male, Osteoarthritis, Osteoblasts, Osteoporosis, Oxidative Stress, Epigenesis, Genetic, Epigenomics
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