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Identification of Pre-symptomatic Gene Signatures That Predict Resilience to Cognitive Decline in the Genetically Diverse AD-BXD Model

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Combinatorial analyses reveal cellular composition changes have different impacts on transcriptomic changes of cell type specific genes in Alzheimer’s Disease

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Microglial Activation, Tau Pathology, and Neurodegeneration Biomarkers Predict Longitudinal Cognitive Decline in Alzheimer’s Disease Continuum

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A Semi-Automated Workflow for Brain Slice Histology Alignment, Registration, and Cell Quantification (SHARCQ)

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Genetic background modifies CNS‐mediated sensorimotor decline in the AD‐BXD mouse model of genetic diversity in Alzheimer's disease

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Flexible annotation atlas of the mouse brain: combining and dividing brain structures of the Allen Brain Atlas while maintaining anatomical hierarchy

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Turning strains into strengths for understanding psychiatric disorders

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HiDiver: A Suite of Methods to Merge Magnetic Resonance Histology, Light Sheet Microscopy, and Complete Brain DelineationsPreprint

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Decosus: An R Framework for Universal Integration of Cell Proportion Estimation Methods

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Hypothalamic gene network dysfunction is associated with cognitive decline and body weight loss in Alzheimer’s disease micePreprint

Dai, Y., Dunn, A. R., Hadad, N., Zhang, J.-G., Poirion, O., Korgan, A., White, B., Philip, V., Neuner, S., O’Connell, K. M. S., et al. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.04.08.487664 · Cited by 2 · see citing works

Brain‐wide spatial analysis to identify region‐specific changes in cell composition associated with resilience to Alzheimer’s disease in the AD‐BXD mouse population

Gurdon, B., Hadad, N., Telpoukhovskaia, M. A., Yates, S. C., Puchades, M. A., Bjaalie, J. G., & Kaczorowski, C. C. (2020) · Alzheimer s & Dementia · doi:10.1002/alz.047613 · Cited by 2 · see citing works

Correction for Johnson et al., Merged magnetic resonance and light sheet microscopy of the whole mouse brain

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Brain‐wide spatial analysis reveals cell‐type‐specific genetic modifiers of Alzheimer’s disease progression

Gurdon, B., Hadad, N., Telpoukhovskaia, M. A., Yates, S. C., Puchades, M. A., Bjaalie, J. G., & Kaczorowski, C. C. (2022) · Alzheimer s & Dementia · doi:10.1002/alz.061853 · Cited by 1 · see citing works

Investigating cellular diversity in a novel Alzheimer’s disease mouse model using the optimized QUINT workflow (v1)

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AtOM, an ontology model to standardize use of brain atlases in tools, workflows, and data infrastructures

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Software and pipelines for registration and analyses of rodent brain image data in reference atlas space

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A neuroscientist’s guide to using murine brain atlases for efficient analysis and transparent reporting

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The developing mouse dopaminergic system: Cortical-subcortical shift in D1/D2 receptor balance and increasing regional differentiation

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DeMBA: a developmental atlas for navigating the mouse brain in space and time

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Brain-wide connectivity and novelty response of the dorsal endopiriform nucleus in mice

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Comparison of basal ganglia regions across murine brain atlases using metadata models and the Waxholm Space

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The Locare workflow: representing neuroscience data locations as geometric objects in 3D brain atlases

Blixhavn, C. H., Reiten, I., Kleven, H., Øvsthus, M., Yates, S. C., Schlegel, U., Puchades, M. A., Schmid, O., Bjaalie, J. G., Bjerke, I. E., et al. (2024) · Frontiers in Neuroinformatics · doi:10.3389/fninf.2024.1284107 · Cited by 3 · see citing works

Vitamin E-valproate co-therapy attenuated oxidative stress, neuroinflammation, related cognitive deficits and neuronal damage in Cypermethrin exacerbated seizure

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Low-coverage whole-genome sequencing facilitates accurate and cost-effective haplotype reconstruction in complex mouse crosses

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Magnetic resonance microscopy maps widespread effects of Alzheimer’s disease on brain structures and behavior in mice

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Global dissection of the impact of Alzheimer’s disease on brain architecture and behavior: High resolution MRH resolves robust regional effectsPreprint

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Progressive Retinal Vascular and Neuronal Degeneration in BXD32 Mice: A Model for Age-Dependent Neurovascular Pathology

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STAT3 mediated the isoleucine-induced Alzheimer’s disease progression

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The emerging role of astrocytes in spatial cognition, action and Alzheimer’s disease

Gaborit, M., Arabi, A., & Mariotti, L. (2026) · Frontiers in Cellular Neuroscience · doi:10.3389/fncel.2026.1811370

Brain‐wide spatial analysis to identify region‐specific changes in cell composition associated with resilience to Alzheimer’s disease in the AD‐BXD mouse population

Gurdon, B., Hadad, N., Telpoukhovskaia, M. A., Yates, S. C., Puchades, M. A., Bjaalie, J. G., & Kaczorowski, C. C. (2020) · Alzheimer s & Dementia · doi:10.1002/alz.047613 · Cited by 2 · see citing works

Brain‐wide spatial analysis reveals cell‐type‐specific genetic modifiers of Alzheimer’s disease progression

Gurdon, B., Hadad, N., Telpoukhovskaia, M. A., Yates, S. C., Puchades, M. A., Bjaalie, J. G., & Kaczorowski, C. C. (2022) · Alzheimer s & Dementia · doi:10.1002/alz.061853 · Cited by 1 · see citing works

Leveraging mouse genetic diversity to investigate the role of brain myeloid cells in Alzheimer’s disease

Yang, H. S., Onos, K. D., Choi, K., Keezer, K. J., Diemler, C. A., Hewes, A. A., O’Rourke, R., O’Rourke, S., Gastoukian, N., Harder, J. M., et al. (2020) · Alzheimer s & Dementia · doi:10.1002/alz.044978

O4‐09‐01: LEVERAGING MOUSE GENETIC DIVERSITY TO INVESTIGATE THE ROLE OF BRAIN MYELOID CELLS IN ALZHEIMER'S DISEASE

Yang, H. S., Onos, K. D., Uyar, A., Choi, K., Keezer, K. J., O’Rourke, R., O’Rourke, S., Sasner, M., Carter, G. W., & Howell, G. R. (2019) · Alzheimer s & Dementia · doi:10.1016/j.jalz.2019.06.4788

Incorporating genetic diversity to improve alignment of mouse models to human Alzheimer’s disease

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