The DOI matches its Crossref record; 17 of the 17 references it cites were found in a registry or an index.
SIMcheck: a Toolbox for Successful Super-resolution Structured Illumination Microscopy
Open accessAbstract
Three-dimensional structured illumination microscopy (3D-SIM) is a versatile and accessible method for super-resolution fluorescence imaging, but generating high-quality data is challenging, particularly for non-specialist users. We present SIMcheck, a suite of ImageJ plugins enabling users to identify and avoid common problems with 3D-SIM data and assess resolution and data quality through objective control parameters. Additionally, SIMcheck provides advanced calibration tools and utilities for common image processing tasks. This open-source software is applicable to all commercial and custom platforms and will promote routine application of super-resolution SIM imaging in cell biology.
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Cites
Fiji: an open-source platform for biological-image analysis
Schindelin, J., Arganda-Carreras, I., Frise, E., Kaynig, V., Longair, M., Pietzsch, T., Preibisch, S., Rueden, C., Saalfeld, S., Schmid, B., et al. (2012) · Nature Methods · doi:10.1038/nmeth.2019 · Cited by 66,890
NIH Image to ImageJ: 25 years of image analysis
Schneider, C. A., Rasband, W. S., & Eliceiri, K. W. (2012) · Nature Methods · doi:10.1038/nmeth.2089 · Cited by 64,638
Gustafsson, M. G. L. (2000) · Journal of Microscopy · doi:10.1046/j.1365-2818.2000.00710.x · Cited by 3,786
Hell, S. W. (2007) · Science · doi:10.1126/science.1137395 · Cited by 2,967
Creating new fluorescent probes for cell biology
Zhang, J., Campbell, R. E., Ting, A. Y., & Tsien, R. Y. (2002) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm976 · Cited by 1,981
Gustafsson, M. G. L., Shao, L., Carlton, P. M., Wang, C. J. R., Golubovskaya, I. N., Cande, W. Z., Agard, D. A., & Sedat, J. W. (2008) · Biophysical Journal · doi:10.1529/biophysj.107.120345 · Cited by 1,557
The transformation of poisson, binomial and negative-binomial data
ANSCOMBE, F. J. (1948) · Biometrika · doi:10.1093/biomet/35.3-4.246 · Cited by 1,300
A guide to super-resolution fluorescence microscopy
Schermelleh, L., Heintzmann, R., & Leonhardt, H. (2010) · Journal of Cell Biology · doi:10.1083/jcb.201002018 · Cited by 1,255
Self-citationBreaking the Diffraction Barrier: Super-Resolution Imaging of Cells
Huang, B., Babcock, H., & Zhuang, X. (2010) · Cell · doi:10.1016/j.cell.2010.12.002 · Cited by 1,156
Schermelleh, L., Carlton, P. M., Haase, S., Shao, L., Winoto, L., Kner, P., Burke, B., Cardoso, M. C., Agard, D. A., Gustafsson, M. G. L., et al. (2008) · Science · doi:10.1126/science.1156947 · Cited by 1,123
Self-citationLaterally modulated excitation microscopy: improvement of resolution by using a diffraction grating:
Heintzmann, R., & Cremer, C. G. (1999) · SPIE Proceedings · doi:10.1117/12.336833 · Cited by 589
Westphal, V., Rizzoli, S. O., Lauterbach, M. A., Kamin, D., & Hell, S. W. (2009) · Advances in Imaging · doi:10.1364/ntm.2009.nma1 · Cited by 365
A contractile and counterbalancing adhesion system controls the 3D shape of crawling cells
Burnette, D. T., Shao, L., Ott, C., Pasapera, A. M., Fischer, R. S., Baird, M. A., Der Loughian, C., Delanoe-Ayari, H., Paszek, M. J., Davidson, M. W., et al. (2014) · Journal of Cell Biology · doi:10.1083/jcb.201311104 · Cited by 184
Smeets, D., Markaki, Y., Schmid, V. J., Kraus, F., Tattermusch, A., Cerase, A., Sterr, M., Fiedler, S., Demmerle, J., Popken, J., et al. (2014) · Epigenetics & Chromatin · doi:10.1186/1756-8935-7-8 · Cited by 180
Self-citationDrosophila patterning is established by differential association of mRNAs with P bodies
Weil, T. T., Parton, R. M., Herpers, B., Soetaert, J., Veenendaal, T., Xanthakis, D., Dobbie, I. M., Halstead, J. M., Hayashi, R., Rabouille, C., et al. (2012) · Nature Cell Biology · doi:10.1038/ncb2627 · Cited by 126
Self-citationAssessing resolution in super-resolution imaging
Demmerle, J., Wegel, E., Schermelleh, L., & Dobbie, I. M. (2015) · Methods · doi:10.1016/j.ymeth.2015.07.001 · Cited by 67
Self-citationStructured illumination superresolution imaging of the cytoskeleton
Engel, U. (2014) · Methods in cell biology · doi:10.1016/b978-0-12-420138-5.00017-3 · Cited by 11
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BAK/BAX macropores facilitate mitochondrial herniation and mtDNA efflux during apoptosis
McArthur, K., Whitehead, L. W., Heddleston, J. M., Li, L., Padman, B. S., Oorschot, V., Geoghegan, N. D., Chappaz, S., Davidson, S., San Chin, H., et al. (2018) · Science · doi:10.1126/science.aao6047 · Cited by 1,072
Treadmilling by FtsZ filaments drives peptidoglycan synthesis and bacterial cell division
Bisson-Filho, A. W., Hsu, Y.-P., Squyres, G. R., Kuru, E., Wu, F., Jukes, C., Sun, Y., Dekker, C., Holden, S., VanNieuwenhze, M. S., et al. (2017) · Science · doi:10.1126/science.aak9973 · Cited by 601
Super-Resolution Structured Illumination Microscopy
Heintzmann, R., & Huser, T. (2017) · Chemical Reviews · doi:10.1021/acs.chemrev.7b00218 · Cited by 574
Faster, sharper, and deeper: structured illumination microscopy for biological imaging
Wu, Y., & Shroff, H. (2018) · Nature Methods · doi:10.1038/s41592-018-0211-z · Cited by 375
Strategic and practical guidelines for successful structured illumination microscopy
Demmerle, J., Innocent, C., North, A. J., Ball, G., Müller, M., Miron, E., Matsuda, A., Dobbie, I. M., Markaki, Y., & Schermelleh, L. (2017) · Nature Protocols · doi:10.1038/nprot.2017.019 · Cited by 336
Self-citation
Metadata
- Authors
- Ball, G., Demmerle, J., Kaufmann, R., Davis, I., Dobbie, I. M., & Schermelleh, L.
- Venue
- Scientific Reports
- Published
- 2015-11-03
- Volume
- 5
- Issue
- 1
- Pages
- 15915-15915
- ISSN
- 2045-2322 (ISSN-L)
- OpenAlex
- W2269415927
- Cited by
- 294
- References
- 17
- FWCI
- 13.44
- Type
- journal article
- Language
- en
- Open access
- gold
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