The gastrointestinal ecosystem: a precarious alliance among epithelium, immunity and microbiota. Microreview
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The gastrointestinal (GI) tract is a complex ecosystem generated by the alliance of GI epithelium, immune cells and resident microbiota. The three components of the GI ecosystem have co-evolved such that each relies on the presence of the other two components to achieve its normal function and activity. Experimental systems such as cell culture, germ-free animal models and intestinal isografts have demonstrated that each member of the GI ecosystem can follow a predetermined developmental pathway, even if isolated from the other components of the ecosystem. However, the presence of all three components is required for full physiological function. Genetic or functional alterations of any one component of this ecosystem can result in a broken alliance and subsequent GI pathology. A more detailed understanding of the interactions among microbiota, GI epithelium and the immune system should provide insight into multiple human disease states.
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Gut microbiota distribution and composition vary along the length of the GI tract and across the lumen, mucus layer, and epithelium.
“The distribution and composition of the gut microbiota changes along the length of the GI tract (Figure 2) and across the lumen, mucus layer, and the epithelium42, 43.”
From The gut Microbiome in adult and pediatric functional gastrointestinal disorders (2019) · cites this paper as [42]
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- Authors
- McCracken, V. J., & Lorenz, R. G.
- Affiliations
- Washington University in St. Louis (US)
- Venue
- Cellular Microbiology
- Publisher
- Hindawi Limited
- Published
- 2001-01
- Volume
- 3
- Issue
- 1
- Pages
- 1-11
- ISSN
- 1462-5814 (ISSN-L)
- 1462-5822
- OpenAlex
- W1789825216
- Cited by
- 314
- References
- 96
- Citations by year
- 2026: 2 · 2025: 11 · 2024: 6 · 2023: 11 · 2022: 6 · 2021: 9 · 2020: 6 · 2019: 10 · 2018: 10 · 2017: 10 · 2016: 10 · 2015: 11 · 2014: 22 · 2013: 11 · 2012: 18
- FWCI
- 4.62
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Cellular Microbiology (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Health Sciences › Medicine › Gastroenterology › Gastrointestinal motility and disorders
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Inflammatory Bowel Disease
- Keywords
- intestinal epithelium, gut microbiota, intestinal immunity, host-microbe interactions, germ-free animals, intestinal development, intestinal pathology, coevolution
- MeSH terms
- Animals, Digestive System, Digestive System Physiological Phenomena, Disease Models, Animal, Epithelium, Genetic Techniques, Germ-Free Life, Humans, Immune System, Intestinal Mucosa, Transplantation, Isogeneic, Ecosystem
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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