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spag e d i: a versatile computer program to analyse spatial genetic structure at the individual or population levels
Abstract
spag e d i version 1.0 is a software primarily designed to characterize the spatial genetic structure of mapped individuals or populations using genotype data of codominant markers. It computes various statistics describing genetic relatedness or differentiation between individuals or populations by pairwise comparisons and tests their significance by appropriate numerical resampling. spag e d i is useful for: (i) detecting isolation by distance within or among populations and estimating gene dispersal parameters; (ii) assessing genetic relatedness between individuals and its actual variance, a parameter of interest for marker based inferences of quantitative inheritance; (iii) assessing genetic differentiation among populations, including the case of haploids or autopolyploids.
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Cited by
Landscape genetics: combining landscape ecology and population genetics
Manel, S., Schwartz, M. K., Luikart, G., & Taberlet, P. (2003) · Trends in Ecology & Evolution · doi:10.1016/s0169-5347(03)00008-9 · Cited by 1,859
New insights from fine‐scale spatial genetic structure analyses in plant populations
Vekemans, X., & Hardy, O. J. (2004) · Molecular Ecology · doi:10.1046/j.1365-294x.2004.02076.x · Cited by 1,313
Self-citationMosher, D. S., Quignon, P., Bustamante, C. D., Sutter, N. B., Mellersh, C. S., Parker, H. G., & Ostrander, E. A. (2007) · PLoS Genetics · doi:10.1371/journal.pgen.0030079 · Cited by 826
Applications of landscape genetics in conservation biology: concepts and challenges
Segelbacher, G., Cushman, S. A., Epperson, B. K., Fortin, M.-J., Francois, O., Hardy, O. J., Holderegger, R., Taberlet, P., Waits, L. P., & Manel, S. (2010) · Conservation Genetics · doi:10.1007/s10592-009-0044-5 · Cited by 470
Self-citationAdaptive evolution of multiple traits through multiple mutations at a single gene
Linnen, C. R., Poh, Y.-P., Peterson, B. K., Barrett, R. D. H., Larson, J. G., Jensen, J. D., & Hoekstra, H. E. (2013) · Science · doi:10.1126/science.1233213 · Cited by 292
Metadata
- Authors
- Hardy, O. J., & Vekemans, X.
- Venue
- Molecular Ecology Notes
- Publisher
- Wiley
- Published
- 2002-10-04
- Volume
- 2
- Issue
- 4
- Pages
- 618-620
- ISSN
- 1471-8278 (ISSN-L)
- 1471-8286
- OpenAlex
- W2107356656
- Cited by
- 3,557
- References
- 1
- FWCI
- 20.34
- Type
- journal article
- Language
- en
- Open access
- closed
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- Hardy, O. J., & Vekemans, X. (2002). spag e d i: a versatile computer program to analyse spatial genetic structure at the individual or population levels. Molecular Ecology Notes. https://doi.org/10.1046/j.1471-8286.2002.00305.x
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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