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Plasma Neutralization of the SARS-CoV-2 Omicron Variant
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Abstract
BACKGROUND: The Omicron SARS-CoV-2 variant has spread internationally and is responsible for rapidly increasing case numbers. The emergence of divergent variants in the context of a heterogeneous and evolving neutralizing antibody response in host populations might compromise protection afforded by vaccines or prior infection. METHODS: We measured neutralizing antibody titers in 169 longitudinally collected plasma samples using pseudotypes bearing the Wuhan-hu-1 or the Omicron variant or a laboratory-designed neutralization-resistant SARS-CoV-2 spike (PMS20). Plasmas were obtained from convalescents who did or did not subsequently receive an mRNA vaccine, or naive individuals who received 3-doses of mRNA or 1-dose Ad26 vaccines. Samples were collected approximately 1, 5-6 and 12 months after initial vaccination or infection. RESULTS: Like PMS20, the Omicron spike protein was substantially resistant to neutralization compared to Wuhan-hu-1. In convalescent plasma the median deficit in neutralizing activity against PMS20 or Omicron was 30- to 60-fold. Plasmas from recipients of 2 mRNA vaccine doses were 30- to 180- fold less potent against PMS20 and Omicron than Wuhan-hu-1. Notably, previously infected or two-mRNA dose vaccinated individuals who received additional mRNA vaccine dose(s) had 38 to 154-fold and 35 to 214-fold increases in neutralizing activity against Omicron and PMS20 respectively. CONCLUSIONS: Omicron exhibits similar distribution of sequence changes and neutralization resistance as does a laboratory-designed neutralization-resistant spike protein, suggesting natural evolutionary pressure to evade the human antibody response. Currently available mRNA vaccine boosters, that may promote antibody affinity maturation, significantly ameliorate SARS-CoV-2 neutralizing antibody titers.
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“However, due to escape of the Omicron variant from current approved vaccines, the efficacy of all current vaccines is reduced and a new variant-specific analysis is therefore required [13][14][15] .”
From Safety and immunogenicity of a prefusion non-stabilized spike protein mRNA COVID-19 vaccine: a phase I trial (2022) · cites this paper as [14]
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“4 (cid:1) 6,37 Thus, both Omicron and Delta breakthrough viruses were presumably selected against immune selection pressure, which prompted us to perform a comparative analysis of their full-genome mutational landscapes including regions with high (hotspots) or low (cold-spots) evolutionary…”
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Agudelo, M., Muecksch, F., Schaefer-Babajew, D. J., Cho, A., DaSilva, J., Bednarski, E., Ramos, V., Oliveira, T. Y., Cipolla, M., Gazumyan, A., et al. (2022) · The Journal of Experimental Medicine · doi:10.1084/jem.20220367 · Cited by 9
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Dürrwald, R., Kolodziejek, J., Oh, D., Herzog, S., Liebermann, H., Osterrieder, N., & Nowotny, N. R. (2022) · Viruses · doi:10.3390/v14122706 · Cited by 10
Abdelaziz, M. O., Raftery, M. J., Weihs, J., Bielawski, O., Edel, R., Köppke, J. K. C., Vladimirova, D., Adler, J. M., Firsching, T. C., Voß, A., et al. (2023) · Frontiers in Immunology · doi:10.3389/fimmu.2023.1166765 · Cited by 10
Patel, R. S., & Agrawal, B. (2022) · Frontiers in Immunology · doi:10.3389/fimmu.2022.952229 · Cited by 10
Detection of the Omicron SARS-CoV-2 Lineage and Its BA.1 Variant with Multiplex RT-qPCR
Yolshin, N. D., Komissarov, A. B., Вадимович, В. К., Даировна, М. Т., Fadeev, A. V., & Lioznov, D. A. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms232416153 · Cited by 10
“Thus, the Omicron variant poses an increased risk of reinfection with SARS-CoV-2 as compared to other VOCs because it is able to resist neutralization by antibodies [6,7] or sera from vaccinated people [8].”
BackgroundViral N protein hijacks deaminase-containing RNA granules to enhance SARS-CoV-2 mutagenesis
Li, Z., Luo, L., Ju, X., Huang, S., Lei, L., Yu, Y., Liu, J., Zhang, P., Chi, T., Ma, P., et al. (2024) · The EMBO Journal · doi:10.1038/s44318-024-00314-y · Cited by 8
Akula, V. R., Bhate, A. S., Gillurkar, C. S., Kushwaha, J. S., Singh, A. P., Singh, C., Pandey, A. K., K, S. K., Rai, S. K., Vadrevu, K. M., et al. (2025) · Communications Medicine · doi:10.1038/s43856-025-00818-6 · Cited by 11
(2022) · doi:10.3390/v14040800 · Cited by 9
“from vaccinated and/or infected patients [21,22], further highlights the need for a reg 433”
BackgroundHirsiger, J. R., Weigang, S., Walz, A., Fuchs, J., Daly, M.-L., Eggimann, S., Hausmann, O. V., Schwemmle, M., Kochs, G., Panning, M., et al. (2022) · The Journal of Allergy and Clinical Immunology In Practice · doi:10.1016/j.jaip.2022.06.020 · Cited by 9
Strategies and safety considerations of booster vaccination in COVID-19
Meng, H., Mao, J., & Ye, Q. (2022) · Biomolecules and Biomedicine · doi:10.17305/bjbms.2021.7082 · Cited by 12
What, Where, When and How of COVID-19 Patents Landscape: A Bibliometrics Review
Liu, K., Zhang, X., Hu, Y., Chen, W., Kong, X., Yao, P., Cong, J., Zuo, H., Wang, J., Li, X., et al. (2022) · Frontiers in Medicine · doi:10.3389/fmed.2022.925369 · Cited by 10
“Omicron is four times more infectious than the Alpha strain and twice as infectious as the Delta strain (36).”
BackgroundSolanki, K., Rajpoot, S., Kumar, A., Zhang, K. Y. J., Ohishi, T., Hirani, N., Wadhonkar, K., Patidar, P., Pan, Q., & Baig, M. S. (2022) · Future Virology · doi:10.2217/fvl-2022-0003 · Cited by 9
Miyakawa, K., Kato, H., Ohtake, N., Jeremiah, S. S., & Ryo, A. (2022) · The Journal of Infectious Diseases · doi:10.1093/infdis/jiac344 · Cited by 9
Divergent Antibody Repertoires Found for Omicron versus Wuhan SARS-CoV-2 Strains Using Ig-MS
Forte, E., Soye, B. J. D., Melani, R. D., Hollas, M. A. R., Kafader, J. O., Sha, B. E., Schneider, J. R., & Kelleher, N. L. (2022) · Journal of Proteome Research · doi:10.1021/acs.jproteome.2c00514 · Cited by 8
Dynamics of SARS-CoV-2 VOC Neutralization and Novel mAb Reveal Protection against Omicron
Hao, L., Hsiang, T.-Y., Dalmat, R. R., Ireton, R. C., Morton, J. F., Stokes, C., Netland, J., Hale, M. R., Thouvenel, C., Wald, A., et al. (2023) · Viruses · doi:10.3390/v15020530 · Cited by 8
Effects of SARS-CoV-2 Omicron BA.1 Spike Mutations on T-Cell Epitopes in Mice
Wang, Y., Wang, B., Zhao, Z., Xu, J., Zhang, Z., Zhang, J., Chen, Y., Song, X., Zheng, W., Hou, L., et al. (2023) · Viruses · doi:10.3390/v15030763 · Cited by 8
Thakur, N. (2022) · doi:10.36227/techrxiv.20363742 · Cited by 9
The immune memory of innate immune systems
Kato, Y., & Kumanogoh, A. (2024) · International Immunology · doi:10.1093/intimm/dxae067 · Cited by 10
Humoral responses to SARS-CoV-2 vaccine in vasculitis-related immune suppression
Kamelian, K., Sievers, B. L., Chen-Xu, M., Turner, S., Cheng, M. T. K., Altaf, M., Kemp, S. A., Abdullahi, A., Csiba, K., Collier, D. A., et al. (2025) · Science Advances · doi:10.1126/sciadv.adq3342 · Cited by 8
“These results echo previous findings using similar approaches ( 26 , 27 ), suggesting that boosters, including homologous WT vaccines, can promote B cell differentiation and affinity maturation in individuals with previous vaccinations ( 28 – 30 ).”
Odak, I., Schultze-Florey, C. R., Hammerschmidt, S. I., Ritter, C., Willenzon, S., Friedrichsen, M., Ravens, I., Sikora, R., Bayir, L. M., Jauregui, R. G., et al. (2022) · Frontiers in Immunology · doi:10.3389/fimmu.2022.863039 · Cited by 8
“org 8 publications indicating that COVID-19 convalescent individuals possess little if any serum antibodies able for neutralizing the Omicron variant (24, 26) It seems likely that the B cell-mediated protection of infection is severely affected due to the high mutational load in the RBD domain of Omicron (9).”
BackgroundResultUnderstanding COVID-19 Vaccines Today: Are T-cells Key Players?
Shafqat, A., Arabi, T. Z., Sabbah, B. N., Abdulkader, H. S., Shafqat, S., Razak, A., Kashir, J., AlKattan, K. M., & Yaqinuddin, A. (2022) · Vaccines · doi:10.3390/vaccines10060904 · Cited by 8
“529) Majority of samples did not reveal neutralizing activity [27] 74% (57–84) [41]”
BackgroundAl-Hatamleh, M. A. I., Abusalah, M. A. H., Hatmal, M. M., Alshaer, W., Ahmad, S., Mohd-Zahid, M. H., Rahman, E. N. S. E. A., Yean, C. Y., Alias, I. Z., Uskoković, V., et al. (2022) · Journal of Taibah University Medical Sciences · doi:10.1016/j.jtumed.2022.11.007 · Cited by 8
“261 The Omicron variant of the coronavirus, which is spreading more quickly than previous variants, is unlikely to help countries achieve herd immunity against COVID-19, wherein individuals would become immune to the virus with decreased spreading rates.”
Zheng, Q., Bao, C., Ji, Y., Li, P., Ma, Z., Wang, X., Meng, Q., & Pan, Q. (2023) · Scientific Reports · doi:10.1038/s41598-023-32619-z · Cited by 8
Hastert, F. D., Hein, S., von Rhein, C., Benz, N. I., Husria, Y., Oberle, D., Maier, T. J., Hildt, E., & Schnierle, B. S. (2022) · Vaccines · doi:10.3390/vaccines10050794 · Cited by 10
“The analysis of humoral immune responses presented here suggests that the emergence of Omicron is due to immune selective pressure in the hosts [28].”
BackgroundLim, S. Y., Park, S., Kim, J. Y., Kim, S., Jee, Y., & Kim, S. (2022) · Clinical Infectious Diseases · doi:10.1093/cid/ciac435 · Cited by 9
“Previous studies have shown that 2 doses of mRNA-based vaccines elicit poor neutralizing 93 antibody responses against the Omicron variant, while 3 doses of mRNA-based vaccines 94 elicit potent responses against the Omicron variant [2-3].”
BackgroundLou, H., Zheng, J.-Q., Fang, X., Liang, Z., Zhang, M. L., Chen, Y. Z., Wang, C., & Cao, X. (2022) · Cell Research · doi:10.1038/s41422-022-00727-6 · Cited by 9
Djordjević, M., Marković, S. S., Salom, I., & Djordjevic, M. (2022) · Environmental Research · doi:10.1016/j.envres.2022.114446 · Cited by 8
Mohsin, M., & Mahmud, S. A. S. (2022) · Research Square · doi:10.21203/rs.3.rs-1316171/v1 · Cited by 8
A Role for Nucleocapsid-Specific Antibody Function in COVID-19 Convalescent Plasma TherapyPreprint
Herman, J. D., Wang, C., Burke, J. S., Zur, Y., Compere, H., Kang, J., Macvicar, R., Shin, S. A., Frank, I., Siegel, D. L., et al. (2022) · medRxiv · doi:10.1101/2022.02.19.22271230 · Cited by 8
Reduced antigenicity of Omicron lowers host serologic responsePreprint
Tubiana, J., Xiang, Y., Fan, L., Wolfson, H. J., Chen, K., Schneidman‐Duhovny, D., & Shi, Y. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.02.15.480546 · Cited by 8
Hederman, A. P., Natarajan, H., Wiener, J. A., Wright, P. F., Bloch, E. M., Tobian, A. A. R., Redd, A. D., Blankson, J. N., Rottenstreich, A., Zarbiv, G., et al. (2022) · medRxiv · doi:10.1101/2022.09.15.22280000 · Cited by 8
Chowdhury, S., Chowdhury, N. S., Chowdhury, N. S., Chowdhury, S., & Chowdhury, S. (2022) · International Journal of Immunopathology and Pharmacology · doi:10.1177/03946320221133001 · Cited by 8
“The effectiveness of neutralizing antibodies generated by vaccines, previous infections, and monoclonal antibody therapy is decreased by the mutations in the Omicron variant.(5) After one or two doses of the coronavirus disease 2019 (COVID-19) vaccine, neutralizing antibodies against the Omicron variant stay low and o…”
BackgroundMiyamoto, S., Numakura, K., Kinoshita, R., Arashiro, T., Takahashi, H., Hibino, H., Hayakawa, M., Kanno, T., Sataka, A., Sakamoto, R., et al. (2025) · Communications Medicine · doi:10.1038/s43856-025-00894-8 · Cited by 6
Ng, E., Choi, C., & Wang, S. X. (2023) · Sensors and Actuators B Chemical · doi:10.1016/j.snb.2023.133773 · Cited by 7
“Mutations to the spike protein associated with Omicron result in greater antigenic escape from antibodies compared to previous variants [32,33].”
Chen, C., Huang, K.-Y. A., Shih, S., Lin, Y., Cheng, C., Huang, Y., Lin, T., & Cheng, S. (2022) · Microbiology Spectrum · doi:10.1128/spectrum.00743-22 · Cited by 7
The Burden of Omicron Variant in Pakistan: An Updated Review
Khan, S., Khan, S., Haider, F., Malik, J., Khan, F., Khan, I., Ullah, I., Zia, M. A., & Kousar, S. (2022) · COVID · doi:10.3390/covid2100105 · Cited by 7
“Scientists expect that vaccines will be less effective against the variant [11].”
BackgroundBoer, J. C., Pan, Q., Holien, J. K., Nguyen, T., Ascher, D. B., & Plebanski, M. (2022) · Frontiers in Immunology · doi:10.3389/fimmu.2022.954435 · Cited by 7
“For instance, through the use of an artificially constructed neutralization resistant virus expressing the Omicron Spike protein variant, authors showed that Omicron and the neutralization resistant Spike construct, were both 30-180 fold more resistant to neuralization by convalescent plasma, compared to the original…”
ResultMcGrath, J., Kenny, C., Nielsen, C. S., Domegan, L. M., Walsh, C., Rooney, P., Walsh, S., Conlon, N. P., Brady, G., Ibrahim, A., et al. (2023) · Frontiers in Medicine · doi:10.3389/fmed.2023.1078022 · Cited by 7
“Booster vaccine dosing with mRNA vaccines mitigates this antibody reduction with significant increases in titres demonstrated in both previously infected individuals and those in receipt of vaccination alone (44, 46).”
BackgroundMuthusami, R., & Saritha, K. (2023) · Proceedings of the Indian National Science Academy · doi:10.1007/s43538-023-00176-8 · Cited by 7
Seo, Y. J., Oh, I., Nam, M., Shin, S., Roh, E. Y., & Song, E. Y. (2023) · Annals of Laboratory Medicine · doi:10.3343/alm.2023.43.6.596 · Cited by 8
“This is in agreement with previous findings of strong hybrid immunity after BI [3, 15, 29].”
Yu, B., Drelich, A. K., Hsu, J. C., Tat, V., Peng, B., Wei, Q., Wang, J., Wang, H., Wages, J. M., Mendelsohn, A. R., et al. (2023) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.3c01201 · Cited by 6
Gaebler, C., DaSilva, J., Bednarski, E., Muecksch, F., Schmidt, F., Weisblum, Y., Millard, K. G., Turroja, M., Cho, A., Wang, Z., et al. (2022) · Open Forum Infectious Diseases · doi:10.1093/ofid/ofac227 · Cited by 7
“Uninfected vaccine recipient participants have been previously described [3] (Supplementary Table 1).”
Self-citationDesign of immunogens for eliciting antibody responses that may protect against SARS-CoV-2 variants
Wang, E. J. D., & Chakraborty, A. K. (2022) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1010563 · Cited by 7
“Indeed, available data on the Omicron variant suggest that this is true [8,9].”
Background
Metadata
- Authors
- Schmidt, F., Muecksch, F., Weisblum, Y., Da Silva, J., Bednarski, E., Cho, A., Wang, Z., Gaebler, C., Caskey, M., Nussenzweig, M. C., Hatziioannou, T., & Bieniasz, P. D.
- Affiliations
- Rockefeller University (US)
- Rockefeller University, New York, NY
- Corresponding author
- Bieniasz, Paul D.
- Venue
- New England Journal of Medicine
- Publisher
- Massachusetts Medical Society
- Published
- 2022-02-10
- Volume
- 386
- Issue
- 6
- Pages
- 599-601
- ISSN
- 0028-4793 (ISSN-L)
- 1533-4406
- PMC
- PMC8687470
- OpenAlex
- W4205145778
- Cited by
- 432
- References
- 22
- Citations by year
- 2026: 9 · 2025: 16 · 2024: 24 · 2023: 68 · 2022: 307
- FWCI
- 32.20
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- New England Journal of Medicine (publishedVersion)
- medRxiv (acceptedVersion, cc-by-nc-nd)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (submittedVersion, cc-by-nc-nd)
- Funders
- Howard Hughes Medical Institute
- National Institutes of Health (2U19AI111825, P01-AI138398-S1, R01AI501111, R01AI78788, R37AI64003)
- National Center for Advancing Translational Sciences (UL1 TR001866)
- Topics
- Health Sciences › Medicine › Infectious Diseases › SARS-CoV-2 and COVID-19 Research
- Health Sciences › Medicine › Infectious Diseases › COVID-19 Clinical Research Studies
- Life Sciences › Agricultural and Biological Sciences › Animal Science and Zoology › Animal Virus Infections Studies
- Keywords
- Omicron variant, neutralizing antibodies, plasma neutralization, spike protein mutations, receptor binding domain, N-terminal domain, antibody escape, Wuhan-Hu-1, COVID-19 recovery, mRNA vaccines, neutralization titers
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