Multiple pathways process stalled replication forks
Open accessAbstract
Impairment of replication fork progression is a serious threat to living organisms and a potential source of genome instability. Studies in prokaryotes have provided evidence that inactivated replication forks can restart by the reassembly of the replication machinery. Several strategies for the processing of inactivated replication forks before replisome reassembly have been described. Most of these require the action of recombination proteins, with different proteins being implicated, depending on the cause of fork arrest. The action of recombination proteins at blocked forks is not necessarily accompanied by a strand-exchange reaction and may prevent rather than repair fork breakage. These various restart pathways may reflect different structures at stalled forks. We review here the different strategies of fork processing elicited by different kinds of replication impairments in prokaryotes and the variety of roles played by recombination proteins in these processes.
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Unrepaired fork gaps can become frank double-strand breaks.
“Unrepaired fork gaps can become frank DSB [24, 61, 62].”
From NER initiation factors, DDB2 and XPC, regulate UV radiation response by recruiting ATR and ATM kinases to DNA damage sites (2013) · cites this paper as [61]
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Proudfoot, C. (2005) · Nucleic Acids Research · doi:10.1093/nar/gki996 · Cited by 74 · see citing works
Coevolution of the Organization and Structure of Prokaryotic Genomes.Preprint
Touchon, M., & Rocha, E. (2016) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a018168 · Cited by 63 · see citing works
Comprehensive prediction of chromosome dimer resolution sites in bacterial genomes
Kono, N., Arakawa, K., & Tomita, M. (2011) · BMC Genomics · doi:10.1186/1471-2164-12-19 · Cited by 73 · see citing works
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Functions of Single-Strand DNA-Binding Proteins in DNA Replication, Recombination, and Repair
Marceau, A. H. (2012) · Methods in molecular biology · doi:10.1007/978-1-62703-032-8_1 · Cited by 73 · see citing works
- Authors
- Michel, B., Grompone, G., Florès, M.-J., & Bidnenko, V.
- Affiliations
- Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement (FR)
- Laboratoire de Génétique Microbienne, Institut National de la Recherche Agronomique, 78352 Jouy en Josas Cedex, France
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- National Academy of Sciences
- Published
- 2004-08-24
- Volume
- 101
- Issue
- 35
- Pages
- 12783-12788
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- PMC
- PMC516472
- OpenAlex
- W2114809602
- Cited by
- 322
- References
- 71
- Citations by year
- 2025: 2 · 2024: 3 · 2023: 3 · 2022: 3 · 2021: 4 · 2020: 11 · 2019: 6 · 2018: 8 · 2017: 6 · 2016: 13 · 2015: 8 · 2014: 18 · 2013: 13 · 2012: 16
- FWCI
- 3.31
- Type
- journal article
- Language
- en
- Open access
- green
- europepmc.org
- Locations
- Proceedings of the National Academy of Sciences (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- HAL (submittedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA Repair Mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Fungal and yeast genetics research
- Keywords
- replication fork restart, stalled replication forks, recombination proteins, genomic instability, strand exchange
- MeSH terms
- Bacteria, DNA, DNA Repair, DNA Replication, Mutation, DNA Gyrase
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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