MAP kinase and autophagy pathways cooperate to maintain RAS mutant cancer cell survival
Open accessAbstract
Significance: Currently, there is no effective targeted therapy for oncogenic KRAS -driven cancer. We set out to identify RAS effector and stress response genes that critically support KRAS addiction, and therefore could serve as potential targets for KRAS mutant cancer. Using a combinatorial siRNA platform, we systematically interrogated the patterns of oncoeffector dependency in KRAS mutant and WT colorectal and pancreatic cancer cell lines and in normal cell lines. We found that RAF kinases are the major KRAS oncoeffectors and that cotargeting BRAF and CRAF kinases together with the autophagy E1 ligase ATG7 could efficiently eliminate KRAS mutant cells while minimizing toxicity in normal cells. Our work thus establishes a framework for the rational selection of target combinations for cancer treatment.
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Genetic and pharmacological screens identified RTK signaling to PI3K and mTOR, and autophagy, as collateral dependencies with KRAS and MAPK pathway inhibitors.
“These experiments have identified receptor tyrosine kinase (RTK) signaling to PI3K and mTOR (23, 37–40), as well as the autophagy pathway (30) as collateral dependencies with KRAS and MAPK pathway inhibitors.”
From KRAS mutation in pancreatic cancer (2021) · cites this paper as [30]
In KRAS-mutant pancreatic cancer cells, the autophagy pathway acts as a collateral dependency alongside MAPK pathway inhibition.
“Recently, through combinatorial RNAi screens and hypothesis-driven approaches, we and others have identified the autophagy pathway as a collateral dependency partner with MAPK pathway inhibitors in pancreatic cancer cells with KRAS mutation (30, 95, 96).”
From KRAS mutation in pancreatic cancer (2021) · cites this paper as [30]
Three simultaneously published studies indicated that upon inhibition of the MAPK pathway, KRAS-mutant tumors depend on autophagy for survival.
“These studies indicated that upon the inhibition of the MAPK pathway, KRAS-mutant tumors depend on autophagy for survival”
From New Horizons in KRAS-Mutant Lung Cancer: Dawn After Darkness (2019) · cites this paper as [68]
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- Authors
- Lee, C.-S., Lee, L. C., Yuan, T. L., Chakka, S., Fellmann, C., Lowe, S. W., Caplen, N. J., McCormick, F., & Luo, J.
- Affiliations
- National Cancer Institute (US)
- University of California, San Francisco (US)
- Cold Spring Harbor Laboratory (US)
- Memorial Sloan Kettering Cancer Center (US)
- ORCID
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- National Academy of Sciences
- Published
- 2019-02
- Volume
- 116
- Issue
- 10
- Pages
- 4508-4517
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- PMC
- PMC6410784
- OpenAlex
- W2913634791
- Cited by
- 126
- References
- 72
- Citations by year
- 2026: 4 · 2025: 11 · 2024: 14 · 2023: 22 · 2022: 14 · 2021: 26 · 2020: 21 · 2019: 14
- FWCI
- 6.21
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Proceedings of the National Academy of Sciences (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Cold Spring Harbor Laboratory Institutional Repository (Cold Spring Harbor Laboratory) (acceptedVersion)
- eScholarship (California Digital Library) (submittedVersion)
- Funders
- National Institutes of Health
- National Cancer Institute (ZIABC011437, T32CA108462, P30CA008748)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Kinase Regulation and GTPase Signaling
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Melanoma and MAPK Pathways
- Health Sciences › Medicine › Epidemiology › Autophagy in Disease and Therapy
- Keywords
- KRAS mutation, MAPK signaling, autophagy, Raf kinase, BRAF, Raf-1, ATG7, colorectal cancer, pancreatic cancer, combination therapy, siRNA screen, tumor cell survival
- MeSH terms
- Autophagic Cell Death, Cell Survival, Humans, Pancreatic Neoplasms, Colorectal Neoplasms, Proto-Oncogene Proteins p21(ras), Caco-2 Cells, MAP Kinase Signaling System, HCT116 Cells, Extracellular Signal-Regulated MAP Kinases
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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