Sequence-specific and Methylation-dependent and -independent Binding of Rice Nuclear Proteins to a Rice Tungro Bacilliform Virus Vascular Bundle Expression Element

Molecular Cloning: A Laboratory Manual

Sambrook, J., Fritsch, E., & Maniatis, T. (1989) · UCLA - Biblioteca de Ciencias de la Salud · Cited by 133,589 · see citing works

Molecular cloning: A laboratory manual

Deininger, P. L. (1990) · Analytical Biochemistry · doi:10.1016/0003-2697(90)90595-z · Cited by 84,684 · see citing works

GUS fusions: beta‐glucuronidase as a sensitive and versatile gene fusion marker in higher plants.

Jefferson, R., Kavanagh, T. A., & Bevan, M. W. (1987) · The EMBO Journal · doi:10.1002/j.1460-2075.1987.tb02730.x · Cited by 9,854 · see citing works

Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex

Nan, X., Ng, H.-H., Johnson, C. A., Laherty, C. D., Turner, B. M., Eisenman, R. N., & Bird, A. (1998) · Nature · doi:10.1038/30764 · Cited by 3,440 · see citing works

Methylation-Induced Repression— Belts, Braces, and Chromatin

Bird, A. P., & Wolffe, A. P. (1999) · Cell · doi:10.1016/s0092-8674(00)81532-9 · Cited by 1,827 · see citing works

Purification, sequence, and cellular localization of a novel chromosomal protein that binds to Methylated DNA

Lewis, J. D., Meehan, R. R., Henzel, W. J., Maurer-Fogy, I., Jeppesen, P., Klein, F., & Bird, A. (1992) · Cell · doi:10.1016/0092-8674(92)90610-o · Cited by 1,371 · see citing works

Effects of DNA methylation on DNA-binding proteins and gene expression

Tate, P. H., & Bird, A. P. (1993) · Current Opinion in Genetics & Development · doi:10.1016/0959-437x(93)90027-m · Cited by 737 · see citing works

Identification of a mammalian protein that binds specifically to DNA containing methylated CpGs

Meehan, R. R., Lewis, J., McKay, S. J., Kleiner, E., & Bird, A. P. (1989) · Cell · doi:10.1016/0092-8674(89)90430-3 · Cited by 659 · see citing works

DNA methylation and chromatin modification

Ng, H.-H., & Adrian, B. (1999) · Current Opinion in Genetics & Development · doi:10.1016/s0959-437x(99)80024-0 · Cited by 648 · see citing works

Cytosine methylation prevents binding to DNA of a HeLa cell transcription factor required for optimal expression of the adenovirus major late promoter.Preprint

Watt, F., & Molloy, P. L. (1988) · Genes & Development · doi:10.1101/gad.2.9.1136 · Cited by 611 · see citing works

Methylation-Sensitive Sequence-Specific DNA Binding by the c-Myc Basic Region

Prendergast, G. C., & Ziff, E. B. (1991) · Science · doi:10.1126/science.1987636 · Cited by 565 · see citing works

How does DNA methylation repress transcription?

Kass, S. U., Pruss, D., & Wolffe, A. P. (1997) · Trends in Genetics · doi:10.1016/s0168-9525(97)01268-7 · Cited by 535 · see citing works

Transgene‐induced gene silencing in plants

Vaucheret, H., Béclin, C., Elmayan, T., Feuerbach, F., Godon, C., Morel, J., Mourrain, P., Palauqui, J., & Vernhettes, S. (1998) · The Plant Journal · doi:10.1046/j.1365-313x.1998.00337.x · Cited by 490 · see citing works

Listening to the silent genes: transgene silencing, gene regulation and pathogen control

Kooter, J. M. (1999) · Trends in Plant Science · doi:10.1016/s1360-1385(99)01467-3 · Cited by 366 · see citing works

High Efficiency Direct Gene Transfer to Plants

Shillito, R. D., Saul, M. W., Paszkowski, J., Müller, M., & Potrykus, I. (1985) · Nature Biotechnology · doi:10.1038/nbt1285-1099 · Cited by 364 · see citing works

Sp1 transcription factor binds DNA and activates transcription even when the binding site is CpG methylated

Höller, M., Westin, G., Jiricny, J., & Schaffner, W. (1988) · Genes & Development · doi:10.1101/gad.2.9.1127 · Cited by 305 · see citing works

Genetically Engineered Fertile Indica-Rice Recovered from Protoplasts

Datta, S. K., Peterhans, A., Datta, K., & Potrykus, I. (1990) · Nature Biotechnology · doi:10.1038/nbt0890-736 · Cited by 305 · see citing works

Active Repression of Methylated Genes by the Chromosomal Protein MBD1

Ng, H., Jeppesen, P., & Bird, A. (2000) · Molecular and Cellular Biology · doi:10.1128/mcb.20.4.1394-1406.2000 · Cited by 292 · see citing works

DNA methylation, a key regulator of plant development and other processes

Finnegan, E. J., Peacock, W. J., & Dennis, E. S. (2000) · Current Opinion in Genetics & Development · doi:10.1016/s0959-437x(00)00061-7 · Cited by 280 · see citing works

Identification of a novel lymphoid specific octamer binding protein (OTF‐2B) by proteolytic clipping bandshift assay (PCBA).

Schreiber, E. H., Matthias, P., Müller, M. M., & Schaffner, W. (1988) · The EMBO Journal · doi:10.1002/j.1460-2075.1988.tb03319.x · Cited by 268 · see citing works

CpG methylation as a mechanism for the regulation of E2F activity

Campanero, M. R., Armstrong, M. I., & Flemington, E. K. (2000) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.100340697 · Cited by 230 · see citing works

The “Dark Side” of Chromatin Remodeling

Tyler, J. K., & Kadonaga, J. T. (1999) · Cell · doi:10.1016/s0092-8674(00)81530-5 · Cited by 223 · see citing works

Sp1 binding is inhibited by mCpmCpG methylation

Clark, S. J., Harrison, J., & Molloy, P. L. (1997) · Gene · doi:10.1016/s0378-1119(97)00164-9 · Cited by 204 · see citing works

The putative transposase of transposable element Ac from Zea mays L. interacts with subterminal sequences of Ac.

Kunze, R., & Starlinger, P. (1989) · The EMBO Journal · doi:10.1002/j.1460-2075.1989.tb08476.x · Cited by 169 · see citing works

Two classes of cis sequences contribute to tissue‐specific expression of a PAL2 promoter in transgenic tobacco

Hatton, D., Sablowski, R. W. M., Yung, M., Smith, C., Schuch, W., & Bevan, M. W. (1995) · The Plant Journal · doi:10.1046/j.1365-313x.1995.07060859.x · Cited by 168 · see citing works

RF2a, a bZIP transcriptional activator of the phloem‐specific rice tungro bacilliform virus promoter, functions in vascular development

Yin, Y., Zhu, Q., Dai, S., Lamb, C., & Beachy, R. N. (1997) · The EMBO Journal · doi:10.1093/emboj/16.17.5247 · Cited by 167 · see citing works

A CACGTG motif of the Antirrhinum majus chalcone synthase promoter is recognized by an evolutionarily conserved nuclear protein.

Staiger, D., Kaulen, H., & Schell, J. (1989) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.86.18.6930 · Cited by 163 · see citing works

MeCP2 driven transcriptional repression in vitro: selectivity for methylated DNA, action at a distance and contacts with the basal transcription machinery

Kaludov, N. K., & Wolffe, A. P. (2000) · Nucleic Acids Research · doi:10.1093/nar/28.9.1921 · Cited by 154 · see citing works

CpG methylation inhibits binding of several sequence-specific DNA-binding proteins from pea, wheat, soybean and cauliflower

Inamdar, N. M., Ehrlich, K. C., & Ehrlich, M. (1991) · Plant Molecular Biology · doi:10.1007/bf00036811 · Cited by 120 · see citing works

CpG methylation directly inhibits binding of the human papillomavirus type 16 E2 protein to specific DNA sequences

Thain, A., Jenkins, O. F., Clarke, A. R., & Gaston, K. (1996) · Journal of Virology · doi:10.1128/jvi.70.10.7233-7235.1996 · Cited by 103 · see citing works

Translation of a polycistronic mRNA in the presence of the cauliflower mosaic virus transactivator protein.

Fütterer, J., & Höhn, T. (1991) · The EMBO Journal · doi:10.1002/j.1460-2075.1991.tb04958.x · Cited by 93 · see citing works

Promoter elements required for phloem‐specific gene expression from the RTBV promoter in rice

Yin, Y., Chen, L., & Beachy, R. N. (1997) · The Plant Journal · doi:10.1046/j.1365-313x.1997.12051179.x · Cited by 92 · see citing works

Combinatorial interactions between positive and negative cis‐acting elements control spatial patterns of 4CL‐1 expression in transgenic tobacco

Hauffe, K. D., Lee, S. P., Subramaniam, R., & Douglas, C. J. (1993) · The Plant Journal · doi:10.1046/j.1365-313x.1993.04020235.x · Cited by 91 · see citing works

Vascular expression of a bean cell wall glycine‐rich protein–β‐glucuronidase gene fusion in transgenic tobacco

Keller, B., Schmid, J., & Lamb, C. J. (1989) · The EMBO Journal · doi:10.1002/j.1460-2075.1989.tb03510.x · Cited by 76 · see citing works

The Structure of Plant Gene Promoters

Guilfoyle, T. J. (1997) · Springer eBooks · doi:10.1007/978-1-4615-5925-2_2 · Cited by 65 · see citing works

The regulatory regions of the rice tungro bacilliform virus promoter and interacting nuclear factors in rice (Oryza sativa L.)

Yin, Y., & Beachy, R. N. (1995) · The Plant Journal · doi:10.1046/j.1365-313x.1995.07060969.x · Cited by 61 · see citing works

In vitro binding of the tomato bZIP transcriptional activator VSF‐1 to a regulatory element that controls xylem‐specific gene expression

Torres‐Schumann, S., Ringli, C., Heierli, D., Amrhein, N., & Keller, B. (1996) · The Plant Journal · doi:10.1046/j.1365-313x.1996.09030283.x · Cited by 56 · see citing works

Estradiol down regulates the binding activity of an avian vitellogenin gene repressor (MDBP-2) and triggers a gradual demethylation of the mCpG pair of its DNA binding site

Jost, J., Saluz, H., & Pawlak, A. (1991) · Nucleic Acids Research · doi:10.1093/nar/19.20.5771 · Cited by 54 · see citing works

A human DNA-binding protein is methylation-specific and sequence-specific

Wang, R. Y. ‐., Zhang, X., & Ehrlich, M. (1986) · Nucleic Acids Research · doi:10.1093/nar/14.4.1599 · Cited by 49 · see citing works

The Major Histocompatibility Complex Class II Promoter-Binding Protein RFX (NF-X) Is a Methylated DNA-Binding Protein

Zhang, X. Y., Jabrane‐Ferrat, N., Asiedu, C. K., Samac, S., Peterlin, B. M., & Ehrlich, M. (1993) · Molecular and Cellular Biology · doi:10.1128/mcb.13.11.6810 · Cited by 48 · see citing works

Analysis of the Methylation Pattern of the Maize Opaque-2 (O2) Promoter and in Vitro Binding Studies Indicate That the O2 B-Zip Protein and Other Endosperm Factors Can Bind to Methylated Target Sequences

Rossi, V., Motto, M., & Pellegrini, L. (1997) · Journal of Biological Chemistry · doi:10.1074/jbc.272.21.13758 · Cited by 45 · see citing works

Upstream and downstream sequence elements determine the specificity of the rice tungro bacilliform virus promoter and influence RNA production after transcription initiation

Klöti, A., Henrich, C. A., Bieri, S., He, X., Chen, G., Burkhardt, P. K., Wünn, J., Lucca, P., Höhn, T., Potrykus, I., et al. (1999) · Plant Molecular Biology · doi:10.1023/a:1006119517262 · Cited by 41 · see citing works

A Plant DNA-Binding Protein That Recognizes 5-Methylcytosine Residues

Zhang, D., Ehrlich, K. C., Supakar, P. C., & Ehrlich, M. (1989) · Molecular and Cellular Biology · doi:10.1128/mcb.9.3.1351-1356.1989 · Cited by 41 · see citing works

Effect of site-specific DNA methylation and mutagenesis on recognition by methylated DNA-binding protein from human placenta

Zhang, X., Ehrlich, K. C., Wang, R. Y. ‐., & Ehrlich, M. (1986) · Nucleic Acids Research · doi:10.1093/nar/14.21.8387 · Cited by 40 · see citing works

A Methylation-responsive MDBP/RFX Site Is in the First Exon of the Collagen α2(I) Promoter

Sengupta, P. K., Ehrlich, M., & Smith, B. D. (1999) · Journal of Biological Chemistry · doi:10.1074/jbc.274.51.36649 · Cited by 39 · see citing works

Cytosine methylation transforms an E2F site in the retinoblastoma gene promoter into a binding site for the general repressor methylcytosine- binding protein 2 (MeCP2)

Fiore, B. D. (1999) · Nucleic Acids Research · doi:10.1093/nar/27.14.2852 · Cited by 37 · see citing works

The Formation of DNA Methylation Patterns and the Silencing of Genes

Jost, J., & Bruhat, A. (1997) · Progress in nucleic acid research and molecular biology · doi:10.1016/s0079-6603(08)60282-2 · Cited by 35 · see citing works

Rice Tungro Bacilliform Virus: Transcription and Translation in Protoplasts

Chen, G., Müller, M. M., Potrykus, I., Höhn, T., & Fütterer, J. (1994) · Virology · doi:10.1006/viro.1994.1513 · Cited by 35 · see citing works

Differential Sensitivity of Zinc Finger Transcription Factors MTF-1, Sp1 and Krox-20 to CpG Methylation of Their Binding Sites

Radtke, F., Hug, M., Georgiev, O., Matsuo, K., & Schaffner, W. (1996) · Biological Chemistry Hoppe-Seyler · doi:10.1515/bchm3.1996.377.1.47 · Cited by 34 · see citing works

Efficient transcription from the rice tungro bacilliform virus promoter requires elements downstream of the transcription start site

Chen, G., Rothnie, H. M., He, X., Höhn, T., & Fütterer, J. (1996) · Journal of Virology · doi:10.1128/jvi.70.12.8411-8421.1996 · Cited by 28 · see citing works

Transcriptional Activation of the Rice Tungro Bacilliform Virus Gene Is Critically Dependent on an Activator Element Located Immediately Upstream of the TATA Box

He, X., Höhn, T., & Fütterer, J. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.275.16.11799 · Cited by 22 · see citing works

A novel parsley 4CL1 cis‐element is required for developmentally regulated expression and protein‐DNA complex formation

Neustaedter, D. A., Lee, S. P., & Douglas, C. J. (1999) · The Plant Journal · doi:10.1046/j.1365-313x.1999.00430.x · Cited by 22 · see citing works

Switching on Gene Expression: Analysis of the Factors that Spatially and Temporally Regulate Plant Gene Expression

Meisel, L. A., & Lam, E. (1997) · Springer eBooks · doi:10.1007/978-1-4615-5925-2_10 · Cited by 19 · see citing works

In vivo footprinting identifies an activating element of the maize Adh2 promoter specific for root and vascular tissues

Paul, A., & Ferl, R. J. (1994) · The Plant Journal · doi:10.1046/j.1365-313x.1994.5040523.x · Cited by 10 · see citing works

Transcription factors as readers and effectors of DNA methylation

Zhu, H., Wang, G., & Qian, J. (2016) · Nature Reviews Genetics · doi:10.1038/nrg.2016.83 · Cited by 649 · see citing works

Tissue-specific silencing of a transgene in rice

Klöti, A., He, X., Potrykus, I., Höhn, T., & Fütterer, J. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.152330299 · Cited by 29 · see citing works

Contribution of downstream promoter elements to transcriptional regulation of the rice tungro bacilliform virus promoter

He, X. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.2.497 · Cited by 28 · see citing works

Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus

Dai, S., Zhang, Z., Bick, J., & Beachy, R. N. (2006) · Journal of General Virology · doi:10.1099/vir.0.81488-0 · Cited by 22 · see citing works

The Binding of Nuclear Factors to the as‐1 Element in the CaMV 35S Promoter is Affected by Cytosine Methylation in Vitro

Kanazawa, A., O’Dell, M. R., & Hellens, R. P. (2007) · Plant Biology · doi:10.1055/s-2006-924633 · Cited by 17 · see citing works

Downstream promoter sequence of an Indian isolate of Rice tungro bacilliform virus alters tissue-specific expression in host rice and acts differentially in heterologous system

Mathur, S., & Dasgupta, I. (2007) · Plant Molecular Biology · doi:10.1007/s11103-007-9214-3 · Cited by 14 · see citing works

Negative regulation of the RTBV promoter by designed zinc finger proteins

Ordiz, M. I., Magnenat, L., Barbas, C. F., & Beachy, R. N. (2010) · Plant Molecular Biology · doi:10.1007/s11103-010-9600-0 · Cited by 12 · see citing works

The large intergenic region of Rice tungro bacilliform virus evolved differentially among geographically distinguished isolates

Banerjee, A., Roy, S., & Tarafdar, J. (2011) · Virus Genes · doi:10.1007/s11262-011-0680-y · Cited by 9 · see citing works

Functional Characterization of Accessible Chromatin in Common Wheat

Zheng, D., Lin, K., Yang, X., Zhang, W., & Cheng, X. (2024) · International Journal of Molecular Sciences · doi:10.3390/ijms25179384 · Cited by 1 · see citing works

Contribution of downstream promoter elements to transcriptional regulation of the rice tungro bacilliform virus promoter

He, X. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.2.497 · Cited by 28 · see citing works

The regulatory regions of the rice tungro bacilliform virus promoter and interacting nuclear factors in rice (Oryza sativa L.)

Yin, Y., & Beachy, R. N. (1995) · The Plant Journal · doi:10.1046/j.1365-313x.1995.07060969.x · Cited by 61 · see citing works

Transcriptional Activation of the Rice Tungro Bacilliform Virus Gene Is Critically Dependent on an Activator Element Located Immediately Upstream of the TATA Box

He, X., Höhn, T., & Fütterer, J. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.275.16.11799 · Cited by 22 · see citing works

Methylation-dependent binding of wheat nuclear proteins to the promoter region of ribosomal RNA genes

Ashapkin, V. V., Antoniv, T. T., & Vanyushin, B. F. (1995) · Gene · doi:10.1016/0378-1119(95)00113-k · Cited by 13 · see citing works

Identification of three sequence-specific DNA-binding proteins which interact with the Rous sarcoma virus enhancer and upstream promoter elements

Goodwin, G. H. (1988) · Journal of Virology · doi:10.1128/jvi.62.6.2186-2190.1988 · Cited by 26 · see citing works