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Proteomics Characterization of Mouse Kidney Peroxisomes by Tandem Mass Spectrometry and Protein Correlation Profiling
Open accessAbstract
The peroxisome represents a ubiquitous single membrane-bound key organelle that executes various metabolic pathways such as fatty acid degradation by alpha- and beta-oxidation, ether-phospholipid biosynthesis, metabolism of reactive oxygen species, and detoxification of glyoxylate in mammals. To fulfil this vast array of metabolic functions, peroxisomes accommodate approximately 50 different enzymes at least as identified until now. Interest in peroxisomes has been fueled by the discovery of a group of genetic diseases in humans, which are caused by either a defect in peroxisome biogenesis or the deficient activity of a distinct peroxisomal enzyme or transporter. Although this research has greatly improved our understanding of peroxisomes and their role in mammalian metabolism, deeper insight into biochemistry and functions of peroxisomes is required to expand our knowledge of this low abundance but vital organelle. In this work, we used classical subcellular fractionation in combination with MS-based proteomics methodologies to characterize the proteome of mouse kidney peroxisomes. We could identify virtually all known components involved in peroxisomal metabolism and biogenesis. Moreover through protein localization studies by using a quantitative MS screen combined with statistical analyses, we identified 15 new peroxisomal candidates. Of these, we further investigated five candidates by immunocytochemistry, which confirmed their localization in peroxisomes. As a result of this joint effort, we believe to have compiled the so far most comprehensive protein catalogue of mammalian peroxisomes.
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“Previous proteomic studies using isolated mammalian peroxisomes have identified ACBD5 as a peroxisomal protein (16,17).”
From Deficiency of a Retinal Dystrophy Protein, Acyl-CoA Binding Domain-containing 5 (ACBD5), Impairs Peroxisomal β-Oxidation of Very-long-chain Fatty Acids (2017) · cites this paper as [17]
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Citations
Cites
Bradford, M. M. (1976) · Analytical Biochemistry · doi:10.1016/0003-2697(76)90527-3 · Cited by 255,302
Algorithm AS 136: A K-Means Clustering Algorithm
Hartigan, J. A., & Wong, M. A. (1979) · Applied Statistics · doi:10.2307/2346830 · Cited by 14,523
Perkins, D. N., Pappin, D., Creasy, D. M., & Cottrell, J. S. (1999) · Electrophoresis · doi:10.1002/(sici)1522-2683(19991201)20:18 · Cited by 8,264
A Model for Random Sampling and Estimation of Relative Protein Abundance in Shotgun Proteomics
Liu, H., Sadygov, R. G., & Yates, J. R. (2004) · Analytical Chemistry · doi:10.1021/ac0498563 · Cited by 2,533
Nakai, K., & Horton, P. (1999) · Trends in Biochemical Sciences · doi:10.1016/s0968-0004(98)01336-x · Cited by 2,181 · cited 3×
“Only four candidates (ZADH2, ACAD11, ABHD14B, and a protein similar to BACAT) contain a peroxisomal targeting signal type 1 (PTS1) as predicted by using PSORT (58).”
MethodProteomic characterization of the human centrosome by protein correlation profiling
Andersen, J. S., Wilkinson, C. J., Mayor, T., Mortensen, P., Nigg, E. A., & Mann, M. (2003) · Nature · doi:10.1038/nature02166 · Cited by 1,319
Trypsin Cleaves Exclusively C-terminal to Arginine and Lysine Residues
Olsen, J. V., Ong, S., & Mann, M. (2004) · Molecular & Cellular Proteomics · doi:10.1074/mcp.t400003-mcp200 · Cited by 1,309
Yates, J. R., Eng, J. K., McCormack, A. L., & Schieltz, D. M. (1995) · Analytical Chemistry · doi:10.1021/ac00104a020 · Cited by 1,254
AAA+ proteins: have engine, will work
Hanson, P. I., & Whiteheart, S. W. (2005) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm1684 · Cited by 1,210
Biochemistry of mammalian peroxisomes revisited
Wanders, R. J. A., & Waterham, H. R. (2006) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.74.082803.133329 · Cited by 995
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Wróbel, L., Topf, U., Brągoszewski, P., Wiese, S., Sztolsztener, M. E., Oeljeklaus, S., Varabyova, A., Lirski, M., Chrościcki, P., Mroczek, S., et al. (2015) · Nature · doi:10.1038/nature14951 · Cited by 471
Self-citationQuantitation in Mass-Spectrometry-Based Proteomics
Schulze, W. X., & Usadel, B. (2010) · Annual Review of Plant Biology · doi:10.1146/annurev-arplant-042809-112132 · Cited by 352
Biochemistry and genetics of inherited disorders of peroxisomal fatty acid metabolism
Veldhoven, P. P. V. (2010) · Journal of Lipid Research · doi:10.1194/jlr.r005959 · Cited by 341
Reumann, S., Quan, S., Aung, K., Yang, P., Manandhar-Shrestha, K., Holbrook, D., Linka, N., Switzenberg, R., Wilkerson, C. G., Weber, A. P. M., et al. (2009) · PLANT PHYSIOLOGY · doi:10.1104/pp.109.137703 · Cited by 262
ACBD5 and VAPB mediate membrane associations between peroxisomes and the ER
Costello, J. L., Castro, I. G., Hacker, C., Schrader, T. A., Metz, J., Zeuschner, D., Azadi, A. S., Godinho, L. F., Costina, V., Findeisen, P., et al. (2017) · The Journal of Cell Biology · doi:10.1083/jcb.201607055 · Cited by 251
Mick, D. U., Dennerlein, S., Wiese, H., Reinhold, R., Pacheu-Grau, D., Lorenzi, I., Sasarman, F., Weraarpachai, W., Shoubridge, E. A., Warscheid, B., et al. (2012) · Cell · doi:10.1016/j.cell.2012.11.053 · Cited by 250
Self-citationMutations in ABCD4 cause a new inborn error of vitamin B12 metabolism
Coelho, D., Kim, J. C., Miousse, I. R., Fung, S., du Moulin, M., Buers, I., Suormala, T., Burda, P., Frapolli, M., Stucki, M., et al. (2012) · Nature Genetics · doi:10.1038/ng.2386 · Cited by 231
Metabolic functions of peroxisomes in health and disease
Wanders, R. J. A. (2013) · Biochimie · doi:10.1016/j.biochi.2013.08.022 · Cited by 232
Self-citationThe physiological functions of human peroxisomes
Wanders, R. J. A., Baes, M., Ribeiro, D., Ferdinandusse, S., & Waterham, H. R. (2023) · Physiological Reviews · doi:10.1152/physrev.00051.2021 · Cited by 228
Self-citationPeroxisome‐mitochondria interplay and disease
Schrader, M., Costello, J. L., Godinho, L. F., & Islinger, M. (2015) · Journal of Inherited Metabolic Disease · doi:10.1007/s10545-015-9819-7 · Cited by 232
Kaller, M., Liffers, S., Oeljeklaus, S., Kuhlmann, K., Röh, S., Hoffmann, R. F. G., Warscheid, B., & Hermeking, H. (2011) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m111.010462 · Cited by 209
Self-citationHunt, M. C., Siponen, M. I., & Alexson, S. E. H. (2012) · Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease · doi:10.1016/j.bbadis.2012.03.009 · Cited by 196
Peroxisomes in brain development and function
Berger, J., Dorninger, F., Forss-Petter, S., & Kunze, M. (2016) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2015.12.005 · Cited by 194
“mammals, peroxisomes contain around 50 different proteins [2], which exert a variety of catabolic and anabolic reactions as, for example, the degradation of very long-chain fatty acids (VLCFA)(1), dicarboxylic”
BackgroundSelf-citationThe peroxisome: still a mysterious organelle
Schrader, M., & Fahimi, H. D. (2008) · Histochemistry and Cell Biology · doi:10.1007/s00418-008-0396-9 · Cited by 207
Beghein, E., & Gettemans, J. (2017) · Frontiers in Immunology · doi:10.3389/fimmu.2017.00771 · Cited by 194
Boisvert, F.-M., Lam, Y. W., Lamont, D., & Lamond, A. I. (2010) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m900429-mcp200 · Cited by 185
Peroxisome biogenesis disorders: Biological, clinical and pathophysiological perspectives
Braverman, N., D’Agostino, D., & MacLean, G. E. (2013) · Developmental Disabilities Research Reviews · doi:10.1002/ddrr.1113 · Cited by 162
Organelle interplay-peroxisome interactions in health and disease.
Schrader, M., Kamoshita, M., & Islinger, M. (2020) · Journal of Inherited Metabolic Disease · doi:10.1002/jimd.12083 · Cited by 149
Fluorescent nanothermometers for intracellular thermal sensing.
Jaque, D., del Rosal, B., Rodríguez, E., Maestro, L. M., Haro-González, P., & Solé, J. (2014) · Nanomedicine · doi:10.2217/nnm.14.59 · Cited by 125
Grou, C. P. O., Carvalho, A. F., Pinto, M. P., Wiese, S., Piechura, H., Meyer, H. E., Warscheid, B., Sá-Miranda, C., & Azevedo, J. E. (2008) · Journal of Biological Chemistry · doi:10.1074/jbc.m800402200 · Cited by 140
Self-citationChristopher, J. A., Stadler, C., Martin, C. E., Morgenstern, M., Pan, Y., Betsinger, C. N., Rattray, D., Mahdessian, D., Gingras, A., Warscheid, B., et al. (2021) · Nature Reviews Methods Primers · doi:10.1038/s43586-021-00029-y · Cited by 139
Self-citationIslinger, M., Li, K. W., Seitz, J., Völkl, A., & Lüers, G. H. (2009) · Traffic · doi:10.1111/j.1600-0854.2009.00966.x · Cited by 138
Pienimaeki‐Roemer, A., Kuhlmann, K., Böttcher, A., Konovalova, T., Black, A., Orsó, E., Liebisch, G., Ahrens, M., Eisenacher, M., Meyer, H. E., et al. (2014) · Transfusion · doi:10.1111/trf.12874 · Cited by 128
Self-citationSubcellular fractionation methods and strategies for proteomics
Lee, Y. H., Tan, H. T., & Chung, M. C. M. (2010) · PROTEOMICS · doi:10.1002/pmic.201000289 · Cited by 127
What Can Proteomics Tell Us About Platelets?
Burkhart, J. M., Gambaryan, S. P., Watson, S. P., Jurk, K., Walter, U., Sickmann, A., Heemskerk, J. W. M., & Zahedi, R. P. (2014) · Circulation Research · doi:10.1161/circresaha.114.301598 · Cited by 128
Peroxisome Biogenesis and Function
Kaur, N., Reumann, S., & Hu, J. (2009) · The Arabidopsis Book · doi:10.1199/tab.0123 · Cited by 128
Peroxisome biogenesis disorders
Argyriou, C., D’Agostino, D., & Braverman, N. (2016) · Translational Science of Rare Diseases · doi:10.3233/trd-160003 · Cited by 129
ACBD5 deficiency causes a defect in peroxisomal very long-chain fatty acid metabolism
Ferdinandusse, S., Falkenberg, K. D., Koster, J., Mooyer, P. A., Jones, R., van Roermund, C. W. T., Pizzino, A., Schrader, M., Wanders, R. J. A., Vanderver, A., et al. (2017) · Journal of Medical Genetics · doi:10.1136/jmedgenet-2016-104132 · Cited by 120
Self-citationKunze, M., & Berger, J. (2015) · Frontiers in Physiology · doi:10.3389/fphys.2015.00259 · Cited by 119
Self-citationBe different—The diversity of peroxisomes in the animal kingdom
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Niemann, M., Wiese, S., Mani, J., Chanfon, A., Jackson, C. B., Meisinger, C., Warscheid, B., & Schneider, A. (2012) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m112.023093 · Cited by 109
Self-citationGronemeyer, T., Wiese, S., Ofman, R., Bunse, C., Pawlas, M., Hayen, H., Eisenacher, M., Stephan, C., Meyer, H. E., Waterham, H. R., et al. (2013) · PLoS ONE · doi:10.1371/journal.pone.0057395 · Cited by 113
Self-citationPredicting the targeting of tail-anchored proteins to subcellular compartments in mammalian cells
Costello, J. L., Castro, I. G., Camões, F., Schrader, T. A., McNeall, D., Yang, J., Giannopoulou, E., Gomes, S. R. A. M., Pogenberg, V., Bonekamp, N. A., et al. (2017) · Journal of Cell Science · doi:10.1242/jcs.200204 · Cited by 115
Honsho, M., & Fujiki, Y. (2017) · FEBS Letters · doi:10.1002/1873-3468.12743 · Cited by 105
Proteomics methods for subcellular proteome analysis
Drissi, R., Dubois, M., & Boisvert, F. (2013) · FEBS Journal · doi:10.1111/febs.12502 · Cited by 105
Ubp15p, a Ubiquitin Hydrolase Associated with the Peroxisomal Export Machinery
Debelyy, M. O., Platta, H. W., Saffian, D., Hensel, A., Thoms, S., Meyer, H. E., Warscheid, B., Girzalsky, W., & Erdmann, R. (2011) · Journal of Biological Chemistry · doi:10.1074/jbc.m111.238600 · Cited by 104
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Rasche, S., Toetter, B., Adler, J., Tschapek, A., Doerner, J. F., Kurtenbach, S., Hatt, H. H., Meyer, H. E., Warscheid, B., & Neuhaus, E. M. (2010) · Chemical Senses · doi:10.1093/chemse/bjq007 · Cited by 103
Self-citationPeroxisomal Atg37 binds Atg30 or palmitoyl-CoA to regulate phagophore formation during pexophagy
Nazarko, T. Y., Ozeki, K., Till, A., Ramakrishnan, G., Lotfi, P., Yan, M., & Subramani, S. (2014) · Journal of Cell Biology · doi:10.1083/jcb.201307050 · Cited by 99
ACBD2/ECI2-Mediated Peroxisome-Mitochondria Interactions in Leydig Cell Steroid Biosynthesis
Fan, J., Li, X., Issop, L., Culty, M., & Papadopoulos, V. (2016) · Molecular Endocrinology · doi:10.1210/me.2016-1008 · Cited by 102
David, C., Koch, J., Oeljeklaus, S., Laernsack, A., Melchior, S., Wiese, S., Schummer, A., Erdmann, R., Warscheid, B., & Brocard, C. (2013) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m112.017830 · Cited by 94
Self-citationOrganelle dynamics and dysfunction: A closer link between peroxisomes and mitochondria
Camões, F., Bonekamp, N. A., Delille, H. K., & Schrader, M. (2008) · Journal of Inherited Metabolic Disease · doi:10.1007/s10545-008-1018-3 · Cited by 93
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Ferreira, M. J., Rodrigues, T. A., Pedrosa, A. G., Silva, A. R., Vilarinho, B. G., Francisco, T., & Azevedo, J. E. (2023) · Redox Biology · doi:10.1016/j.redox.2023.102917 · Cited by 98
Self-citationRegulation of peroxisomal lipid metabolism: The role of acyl-CoA and coenzyme A metabolizing enzymes
Hunt, M. C., Tillander, V., & Alexson, S. E. H. (2014) · Biochimie · doi:10.1016/j.biochi.2013.12.018 · Cited by 91
Deciphering preferential interactions within supramolecular protein complexes: the proteasome case
Fabre, B., Lambour, T., Garrigues, L., Amalric, F., Vigneron, N., Menneteau, T., Stella, A., Monsarrat, B., den Eynde, B. J. V., Burlet‐Schiltz, O., et al. (2015) · Molecular Systems Biology · doi:10.15252/msb.20145497 · Cited by 88
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Yagita, Y., Shinohara, K., Abe, Y., Nakagawa, K., Al-Owain, M., Alkuraya, F. S., & Fujiki, Y. (2017) · Journal of Biological Chemistry · doi:10.1074/jbc.m116.760090 · Cited by 85
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Castro, I. G., Richards, D. M., Metz, J., Costello, J. L., Passmore, J. B., Schrader, T. A., Gouveia, A., Ribeiro, D., & Schrader, M. (2018) · Traffic · doi:10.1111/tra.12549 · Cited by 91
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Žárský, V., & Doležal, P. (2016) · Biology Direct · doi:10.1186/s13062-016-0157-y · Cited by 81
Klein, J. M., Busch, J. D., Potting, C., Baker, M. J., Langer, T., & Schwarz, G. (2012) · Journal of Biological Chemistry · doi:10.1074/jbc.m112.419424 · Cited by 79
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Girzalsky, W., Saffian, D., & Erdmann, R. (2010) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2010.01.002 · Cited by 77
Self-citationThe mammalian molybdenum enzymes of mARC
Ott, G., Havemeyer, A., & Clement, B. (2014) · JBIC Journal of Biological Inorganic Chemistry · doi:10.1007/s00775-014-1216-4 · Cited by 78
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Francisco, T., Rodrigues, T. A., Dias, A. F., Barros‐Barbosa, A., Bicho, D., & Azevedo, J. E. (2017) · BioEssays · doi:10.1002/bies.201700047 · Cited by 76
Self-citationOrganelle interplay in peroxisomal disorders
Thoms, S., Grønborg, S. W., & Gärtner, J. (2009) · Trends in Molecular Medicine · doi:10.1016/j.molmed.2009.05.002 · Cited by 74
Hunt, M. C., & Alexson, S. E. (2008) · Progress in Lipid Research · doi:10.1016/j.plipres.2008.05.001 · Cited by 76
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Bharti, P., Schliebs, W., Schievelbusch, T., Neuhaus, A., David, C., Kock, K., Herrmann, C., Meyer, H. E., Wiese, S., Warscheid, B., et al. (2011) · Journal of Cell Science · doi:10.1242/jcs.079368 · Cited by 74
Self-citationThe peroxisome as a cell signaling organelle
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Perry, R. J., Mast, F. D., & Rachubinski, R. A. (2009) · Eukaryotic Cell · doi:10.1128/ec.00024-09 · Cited by 70
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Self-citationHofhuis, J., Schueren, F., Nötzel, C., Lingner, T., Gärtner, J., Jahn, O., & Thoms, S. (2016) · Open Biology · doi:10.1098/rsob.160246 · Cited by 59
Peroxisomal Targeting of PTS2 Pre‐Import Complexes in the Yeast Saccharomyces cerevisiae
Grunau, S., Schliebs, W., Linnepe, R., Neufeld, C., Cizmowski, C., Reinartz, B. S., Meyer, H. E., Warscheid, B., Girzalsky, W., & Erdmann, R. (2009) · Traffic · doi:10.1111/j.1600-0854.2008.00876.x · Cited by 62
Self-citationPeroxisomal Metabolite and Cofactor Transport in Humans
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Self-citationReumann, S. (2011) · PROTEOMICS · doi:10.1002/pmic.201000681 · Cited by 61
Kashiwayama, Y., Seki, M., Yasui, A., Murasaki, Y., Morita, M., Yamashita, Y., Sakaguchi, M., Tanaka, Y., & Imanaka, T. (2008) · Experimental Cell Research · doi:10.1016/j.yexcr.2008.10.031 · Cited by 60
The effect of organelle discovery upon sub-cellular protein localisation
Breckels, L. M., Gatto, L., Christoforou, A., Groen, A. J., Lilley, K. S., & Trotter, M. W. B. (2013) · Journal of Proteomics · doi:10.1016/j.jprot.2013.02.019 · Cited by 57
Peroxisome membrane proteins: multiple trafficking routes and multiple functions?
Theodoulou, F. L., Bernhardt, K., Linka, N., & Baker, A. (2013) · Biochemical Journal · doi:10.1042/bj20130078 · Cited by 59
Defining the Plant Peroxisomal Proteome: From Arabidopsis to Rice
Kaur, N., & Hu, J. (2011) · Frontiers in Plant Science · doi:10.3389/fpls.2011.00103 · Cited by 59
Skiba, N. P., Spencer, W. J., Salinas, R. Y., Lieu, E. C., Thompson, J. W., & Arshavsky, V. Y. (2013) · Journal of Proteome Research · doi:10.1021/pr4003678 · Cited by 55
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Islinger, M., Costello, J. L., Kors, S., Soupène, E., Levine, T. P., Kuypers, F. A., & Schrader, M. (2020) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2020.118675 · Cited by 53
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Plitzko, B., Ott, G., Reichmann, D., Henderson, C. J., Wolf, C. R., Mendel, R. R., Bittner, F., Clement, B., & Havemeyer, A. (2013) · Journal of Biological Chemistry · doi:10.1074/jbc.m113.474916 · Cited by 51
Islinger, M., Li, K. W., Loos, M., Liebler, S. S., Angermüller, S., Eckerskorn, C., Weber, G., Abdolzade‐Bavil, A., & Völkl, A. (2009) · Journal of Proteome Research · doi:10.1021/pr9004663 · Cited by 52
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Breckels, L. M., Holden, S. B., Wojnar, D., Mulvey, C. M., Christoforou, A., Groen, A. J., Trotter, M. W. B., Kohlbacher, O., Lilley, K. S., & Gatto, L. (2016) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1004920 · Cited by 50
Trotter, M. W. B., Sadowski, P. G., Dunkley, T. P. J., Groen, A. J., & Lilley, K. S. (2010) · PROTEOMICS · doi:10.1002/pmic.201000359 · Cited by 46
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Alencastre, I. S., Rodrigues, T. A., Grou, C. P. O., Fransen, M., Sá-Miranda, C., & Azevedo, J. E. (2009) · Journal of Biological Chemistry · doi:10.1074/jbc.m109.032565 · Cited by 47
Self-citationHelbig, A. O., de Groot, M. J. L., van Gestel, R. A., Mohammed, S., de Hulster, E. A. F., Luttik, M. A. H., Daran-Lapujade, P. A. S., Pronk, J. T., Heck, A. J. R., & Slijper, M. (2009) · PROTEOMICS · doi:10.1002/pmic.200800951 · Cited by 47
Oeljeklaus, S., Reinartz, B. S., Wolf, J., Wiese, S., Tonillo, J., Podwojski, K., Kuhlmann, K., Stephan, C., Meyer, H. E., Schliebs, W., et al. (2012) · Journal of Proteome Research · doi:10.1021/pr3000333 · Cited by 45
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Managadze, D., Würtz, C., Wiese, S., Schneider, M., Girzalsky, W., Meyer, H. E., Erdmann, R., Warscheid, B., & Rottensteiner, H. (2010) · European Journal of Cell Biology · doi:10.1016/j.ejcb.2010.07.003 · Cited by 44
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Francisco, T., Rodrigues, T. A., Pinto, M. P., Carvalho, A. F., Azevedo, J. E., & Grou, C. P. O. (2013) · Biochimie · doi:10.1016/j.biochi.2013.08.003 · Cited by 42
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Karnati, S., & Baumgart‐Vogt, E. (2008) · Histochemistry and Cell Biology · doi:10.1007/s00418-008-0462-3 · Cited by 42
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Yofe, I., Soliman, K., Chuartzman, S. G., Morgan, B., Weill, U., Yifrach, E., Dick, T. P., Cooper, S. J., Ejsing, C. S., Schuldiner, M., et al. (2017) · Journal of Cell Science · doi:10.1242/jcs.187914 · Cited by 41
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Al-Saryi, N. A., Al-Hejjaj, M. Y., van Roermund, C. W. T., Hulmes, G. E., Ekal, L., Payton, C., Wanders, R. J. A., & Hettema, E. H. (2017) · Scientific Reports · doi:10.1038/s41598-017-11942-2 · Cited by 41
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Yan, W., Aebersold, R. H., & Raines, E. W. (2008) · Journal of Proteomics · doi:10.1016/j.jprot.2008.11.017 · Cited by 42
Waentig, L., Jakubowski, N., Hayen, H., & Roos, P. H. (2011) · Journal of Analytical Atomic Spectrometry · doi:10.1039/c1ja10090d · Cited by 39
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Shim, S. M., Choi, H. R., Kwon, S. C., Kim, H. Y., Sung, K. W., Jung, E. J., Mun, S. R., Bae, T. H., Kim, D. H., Son, Y. S., et al. (2022) · Autophagy · doi:10.1080/15548627.2022.2126617 · Cited by 39
Hu, D., Tan, M., Lu, D., Kleiboeker, B. A., Liu, X., Park, H., Kravitz, A. V., Shoghi, K. I., Tseng, Y., Razani, B., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-41849-8 · Cited by 41
Bonekamp, N. A., Sampaio, P., de Abreu, F. V., Lüers, G. H., & Schrader, M. (2012) · Traffic · doi:10.1111/j.1600-0854.2012.01356.x · Cited by 38
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Costello, J. L., Passmore, J. B., Islinger, M., & Schrader, M. (2018) · Sub-cellular biochemistry/Subcellular biochemistry · doi:10.1007/978-981-13-2233-4_17 · Cited by 39
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Freitas, M. O., Francisco, T., Rodrigues, T. A., Lismont, C., Domingues, P. M., Pinto, M. P., Grou, C. P. O., Fransen, M., & Azevedo, J. E. (2015) · Open Biology · doi:10.1098/rsob.140236 · Cited by 37
Self-citation
Metadata
- Authors
- Wiese, S., Gronemeyer, T., Ofman, R., Kunze, M., Grou, C. P., Almeida, J. A., Eisenacher, M., Stephan, C., Hayen, H., Schollenberger, L., Korosec, T., Waterham, H. R., Schliebs, W., Erdmann, R., Berger, J., Meyer, H. E., Just, W., Azevedo, J. E., Wanders, R. J. A., Warscheid, B., & Grou, C. P.
- Affiliations
- Ruhr University Bochum (DE)
- Universidade do Porto (PT)
- Amsterdam UMC Location University of Amsterdam (NL)
- Medical University of Vienna (AT)
- Instituto de Biologia Molecular e Celular (PT)
- Heidelberg University (DE)
- Corresponding author
- Warscheid, Bettina
- ORCID
- Venue
- Molecular & Cellular Proteomics
- Publisher
- Elsevier BV
- Published
- 2007-12
- Volume
- 6
- Issue
- 12
- Pages
- 2045-2057
- ISSN
- 1535-9476 (ISSN-L)
- OpenAlex
- W2121085194
- Cited by
- 231
- References
- 70
- Citations by year
- 2026: 3 · 2025: 5 · 2024: 10 · 2023: 17 · 2022: 11 · 2021: 5 · 2020: 6 · 2019: 5 · 2018: 16 · 2017: 11 · 2016: 16 · 2015: 16 · 2014: 14 · 2013: 18 · 2012: 14
- FWCI
- 7.84
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Molecular & Cellular Proteomics (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Data Archiving and Networked Services (DANS) (submittedVersion)
- Pure Amsterdam UMC (submittedVersion)
- Funders
- European Commission (LSHG-CT-2004-512018)
- Deutsche Forschungsgemeinschaft
- Austrian Science Fund
- Topics
- Physical Sciences › Chemistry › Spectroscopy › Advanced Proteomics Techniques and Applications
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Redox biology and oxidative stress
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Clinical Biochemistry › Metabolism and Genetic Disorders
- Keywords
- peroxisomes, mouse kidney, peroxisome biogenesis, peroxisomal enzymes, peroxisomal proteins, protein localization, peroxisomal disorders, fatty acid oxidation, reactive oxygen species metabolism
- MeSH terms
- Animals, Chromatography, High Pressure Liquid, Kidney, Peroxisomes, Spectrometry, Mass, Electrospray Ionization, Proteomics, Mice, Tandem Mass Spectrometry
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