Cited by 162Gut microbiota and healthNutritional Studies and DietNutrition, Genetics, and Disease

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Linking dietary patterns with gut microbial composition and function

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Sheflin, Amy M., Melby, Christopher L., Carbonero, Franck, Weir, Tiffany L.·2017·Gut Microbes

DOI 10.1080/19490976.2016.1270809PMC PMC5390824

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Abstract

Emerging insights have implicated the gut microbiota as an important factor in the maintenance of human health. Although nutrition research has focused on how direct interactions between dietary components and host systems influence human health, it is becoming increasingly important to consider nutrient effects on the gut microbiome for a more complete picture. Understanding nutrient-host-microbiome interactions promises to reveal novel mechanisms of disease etiology and progression, offers new disease prevention strategies and therapeutic possibilities, and may mandate alternative criteria to evaluate the safety of food ingredients. Here we review the current literature on diet effects on the microbiome and the generation of microbial metabolites of dietary constituents that may influence human health. We conclude with a discussion of the relevance of these studies to nutrition and public health and summarize further research needs required to realize the potential of exploiting diet-microbiota interactions for improved health.

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Structure, function and diversity of the healthy human microbiome
The Human Microbiome Project Consortium (2012) · Nature · doi:10.1038/nature11234 · Cited by 11,726
Diet rapidly and reproducibly alters the human gut microbiome
David, L. A., Maurice, C. F., Carmody, R. N., Gootenberg, D. B., Button, J. E., Wolfe, B. E., Ling, A. V., Devlin, A. S., Varma, Y., Fischbach, M. A., et al. (2014) · Nature · doi:10.1038/nature12820 · Cited by 10,100
Human gut microbiome viewed across age and geography
Yatsunenko, T., Rey, F. E., Manary, M. J., Trehan, I., Dominguez-Bello, M. G., Contreras, M., Magris, M., Hidalgo, G., Baldassano, R. N., Anokhin, A. P., et al. (2012) · Nature · doi:10.1038/nature11053 · Cited by 7,815
Linking long-term dietary patterns with gut microbial enterotypes
Wu, G. D., Chen, J., Hoffmann, C., Bittinger, K., Chen, Y.-Y., Keilbaugh, S. A., Bewtra, M., Knights, D., Walters, W. A., Knight, R., et al. (2011) · Science · doi:10.1126/science.1208344 · Cited by 6,513
Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
De Filippo, C., Cavalieri, D., Di Paola, M., Ramazzotti, M., Poullet, J. B., Massart, S., Collini, S., Pieraccini, G., & Lionetti, P. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1005963107 · Cited by 5,579
The role of short-chain fatty acids in the interplay between diet, gut microbiota, and host energy metabolism
den Besten, G., van Eunen, K., Groen, A. K., Venema, K., Reijngoud, D.-J., & Bakker, B. M. (2013) · Journal of Lipid Research · doi:10.1194/jlr.r036012 · Cited by 5,048
Intestinal microbiota metabolism of l-carnitine, a nutrient in red meat, promotes atherosclerosis
Koeth, R. A., Wang, Z., Levison, B. S., Buffa, J. A., Org, E., Sheehy, B. T., Britt, E. B., Fu, X., Wu, Y., Li, L., et al. (2013) · Nature Medicine · doi:10.1038/nm.3145 · Cited by 4,386
Evolution of mammals and their gut microbes
Ley, R. E., Hamady, M., Lozupone, C., Turnbaugh, P. J., Ramey, R. R., Bircher, J. S., Schlegel, M. L., Tucker, T. A., Schrenzel, M. D., Knight, R., et al. (2008) · Science · doi:10.1126/science.1155725 · Cited by 3,747
Role of the normal gut microbiota
Jandhyala, S. M. (2015) · World Journal of Gastroenterology · doi:10.3748/wjg.v21.i29.8787 · Cited by 3,001
Bile salt biotransformations by human intestinal bacteria
Ridlon, J. M., Kang, D.-J., & Hylemon, P. B. (2006) · Journal of Lipid Research · doi:10.1194/jlr.r500013-jlr200 · Cited by 2,829

Show all 147 references

Research works printed but not linked: 6

Camire M, 2001, Cereal Foods World, 46, 112
Graf D, 2015, Microb Ecol Health Dis, 26, 26164
Macfarlane G, 2008, J Appl Microbiol, 104, 305
García-Peris P, 2012, Nutr Hosp, 27, 1908
Waitzberg DL, 2012, Nutr Hosp, 27, 123
Van de Wiele T, 2007, J ApplMicrobiol, 102, 452

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Authors: Sheflin, A. M., Melby, C. L., Carbonero, F., & Weir, T. L.
Affiliations: Colorado State University (US)
University of Arkansas at Fayetteville (US)
Corresponding author: Weir, Tiffany L.
ORCID: Sheflin, Amy M.
Melby, Christopher L.
Carbonero, Franck
Weir, Tiffany L.
Venue: Gut Microbes
Publisher: Informa UK Limited
Published: 2016-12-14
Volume: 8
Issue: 2
Pages: 113-129
ISSN: 1949-0976 (ISSN-L)
1949-0984
DOI: 10.1080/19490976.2016.1270809
PMC: PMC5390824
OpenAlex: W2561384804
Cited by: 162
References: 147
Citations by year: 2026: 15 · 2025: 15 · 2024: 17 · 2023: 12 · 2022: 14 · 2021: 22 · 2020: 17 · 2019: 20 · 2018: 19 · 2017: 10
FWCI: 1.46
Type: journal article
Language: en
Open access: gold
doi.org
Locations: Gut Microbes (publishedVersion)
Europe PMC (PubMed Central) (publishedVersion)
PubMed Central (publishedVersion)
PubMed (publishedVersion)
Topics: Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
Health Sciences › Medicine › Public Health, Environmental and Occupational Health › Nutritional Studies and Diet
Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Nutrition, Genetics, and Disease
Keywords: dietary habits, gut microbiota, diet-microbiome interactions, human health, disease prevention, food ingredient safety
MeSH terms: Gastrointestinal Microbiome, Animals, Diet, Feeding Behavior, Food Analysis, Humans, Gastrointestinal Tract

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Linking dietary patterns with gut microbial composition and function

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