Homology of SMP Domains to the TULIP Superfamily of Lipid-Binding Proteins Provides a Structural Basis for Lipid Exchange between ER and Mitochondria

Basic local alignment search tool

Altschul, S. F., Gish, W., Miller, W., Myers, E. W., & Lipman, D. J. (1990) · Journal of Molecular Biology · doi:10.1006/jmbi.1990.9999 · Cited by 98,669 · see citing works

SCOP: A structural classification of proteins database for the investigation of sequences and structures

Murzin, A. G., Brenner, S. E., Hubbard, T., & Chothia, C. (1995) · Journal of Molecular Biology · doi:10.1016/s0022-2836(05)80134-2 · Cited by 6,412 · see citing works

I-TASSER: a unified platform for automated protein structure and function prediction

Roy, A., Küçükural, A., & Zhang, Y. (2010) · Nature Protocols · doi:10.1038/nprot.2010.5 · Cited by 6,093 · see citing works

Protein structure prediction on the Web: a case study using the Phyre server

Kelley, L. A., & Sternberg, M. J. E. (2009) · Nature Protocols · doi:10.1038/nprot.2009.2 · Cited by 4,154 · see citing works

The HHpred interactive server for protein homology detection and structure prediction

Söding, J., Biegert, A., & Lupas, A. N. (2005) · Nucleic Acids Research · doi:10.1093/nar/gki408 · Cited by 3,703 · see citing works

Mitochondria: More Than Just a Powerhouse

McBride, H. M., Neuspiel, M., & Wasiak, S. (2006) · Current Biology · doi:10.1016/j.cub.2006.06.054 · Cited by 1,985 · see citing works

An ER-Mitochondria Tethering Complex Revealed by a Synthetic Biology Screen

Kornmann, B., Currie, E., Collins, S. R., Schuldiner, M., Nunnari, J., Weissman, J. S., & Walter, P. (2009) · Science · doi:10.1126/science.1175088 · Cited by 1,275 · see citing works

Mitochondrial Morphology and Dynamics in Yeast and Multicellular Eukaryotes

Okamoto, K., & Shaw, J. M. (2005) · Annual Review of Genetics · doi:10.1146/annurev.genet.38.072902.093019 · Cited by 737 · see citing works

CLANS: a Java application for visualizing protein families based on pairwise similarity

Frickey, T., & Lupas, A. N. (2004) · Bioinformatics · doi:10.1093/bioinformatics/bth444 · Cited by 721 · see citing works

Template-based modeling and free modeling by I-TASSER in CASP7

Zhang, Y. (2007) · Proteins Structure Function and Bioinformatics · doi:10.1002/prot.21702 · Cited by 467 · see citing works

I‐TASSER: Fully automated protein structure prediction in CASP8

Zhang, Y. (2009) · Proteins Structure Function and Bioinformatics · doi:10.1002/prot.22588 · Cited by 420 · see citing works

MUSTER: Improving protein sequence profile–profile alignments by using multiple sources of structure information

Wu, S., & Zhang, Y. (2008) · Proteins Structure Function and Bioinformatics · doi:10.1002/prot.21945 · Cited by 375 · see citing works

Maturation of cellular Fe–S proteins: an essential function of mitochondria

Lill, R., & Kispal, G. (2000) · Trends in Biochemical Sciences · doi:10.1016/s0968-0004(00)01589-9 · Cited by 358 · see citing works

Crystal Structure of Human BPI and Two Bound Phospholipids at 2.4 Angstrom Resolution

Beamer, L. J., Carroll, S. F., & Eisenberg, D. S. (1997) · Science · doi:10.1126/science.276.5320.1861 · Cited by 357 · see citing works

Maturation of cellular Fe-S proteins: an essential function of mitochondria

Gray, H. B. (2000) · Cited by 307 · see citing works

Association between the endoplasmic reticulum and mitochondria of yeast facilitates interorganelle transport of phospholipids through membrane contact

Achleitner, G., Gaigg, B., Krasser, A., Kainersdorfer, E., Kohlwein, S. D., Perktold, A., Zellnig, G., & Daum, G. (1999) · European Journal of Biochemistry · doi:10.1046/j.1432-1327.1999.00658.x · Cited by 300 · see citing works

Crystal structure of cholesteryl ester transfer protein reveals a long tunnel and four bound lipid molecules

Qiu, X., Mistry, A., Ammirati, M. J., Chrunyk, B. A., Clark, R. W., Cong, Y., Culp, J. S., Danley, D. E., Freeman, T. B., Geoghegan, K. F., et al. (2007) · Nature Structural & Molecular Biology · doi:10.1038/nsmb1197 · Cited by 275 · see citing works

The MPI Bioinformatics Toolkit for protein sequence analysis

Biegert, A., Mayer, C., Remmert, M., et al. (2006) · Nucleic Acids Research · doi:10.1093/nar/gkl217 · Cited by 274 · see citing works

The Mitochondrial Morphology Protein Mdm10 Functions in Assembly of the Preprotein Translocase of the Outer Membrane

Meisinger, C., Rissler, M., Chacińska, A., Szklarz, L. K. S., Milenkovic, D., Kozjak‐Pavlovic, V., Schönfisch, B., Lohaus, C., Meyer, H. E., Yaffe, M. P., et al. (2004) · Developmental Cell · doi:10.1016/j.devcel.2004.06.003 · Cited by 268 · see citing works

Mmm2p, a Mitochondrial Outer Membrane Protein Required for Yeast Mitochondrial Shape and Maintenance of mtDNA Nucleoids

Youngman, M. J., Hobbs, A. E. A., Burgess, S. M., Srinivasan, M., & Jensen, R. E. (2004) · The Journal of Cell Biology · doi:10.1083/jcb.200308012 · Cited by 148 · see citing works

A new progressive-iterative algorithm for multiple structure alignment

Lupyan, D., Leo‐Macías, A., & Ortíz, Á. R. (2005) · Bioinformatics · doi:10.1093/bioinformatics/bti527 · Cited by 145 · see citing works

The Structure of the Dust Mite Allergen Der p 7 Reveals Similarities to Innate Immune Proteins

Mueller, G., Edwards, L. L., Aloor, J., Fessler, M., Glesner, J., Pomés, A., Chapman, M., London, R., & Pedersen, L. (2010) · Journal of Allergy and Clinical Immunology · doi:10.1016/j.jaci.2009.12.016 · Cited by 112 · see citing works

MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8

Wang, Z., Eickholt, J., & Cheng, J. J. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btq058 · Cited by 97 · see citing works

New perspectives on the regulation of intermembrane glycerophospholipid traffic

Voelker, D. R. (2003) · Journal of Lipid Research · doi:10.1194/jlr.r200020-jlr200 · Cited by 96 · see citing works

Diverse membrane‐associated proteins contain a novel SMP domain

Lee, I., & Hong, W. (2006) · The FASEB Journal · doi:10.1096/fj.05-4581hyp · Cited by 89 · see citing works

HHsenser: exhaustive transitive profile search using HMM-HMM comparison

Söding, J., Remmert, M., Biegert, A., & Lupas, A. N. (2006) · Nucleic Acids Research · doi:10.1093/nar/gkl195 · Cited by 88 · see citing works

Correlation of observed fold frequency with the occurrence of local structural motifs

Salem, G. M., Hutchinson, E. G., Orengo, C. A., & Thornton, J. M. (1999) · Journal of Molecular Biology · doi:10.1006/jmbi.1999.2642 · Cited by 81 · see citing works

Insect Juvenile Hormone Binding Protein Shows Ancestral Fold Present in Human Lipid-Binding Proteins

Kolodziejczyk, R., Bujacz, G., Jakób, M., Ożyhar, A., Jaskólski, M., & Kochman, M. (2008) · Journal of Molecular Biology · doi:10.1016/j.jmb.2008.01.026 · Cited by 62 · see citing works

Crystal Structure of Epiphyas postvittana Takeout 1 with Bound Ubiquinone Supports a Role as Ligand Carriers for Takeout Proteins in Insects

Hamiaux, C., Stanley, D., Greenwood, D. R., et al. (2008) · Journal of Biological Chemistry · doi:10.1074/jbc.m807467200 · Cited by 54 · see citing works

The 1.7 Å crystal structure of BPI: a study of how two dissimilar amino acid sequences can adopt the same fold 1 1Edited by D. Rees

Kleiger, G., Beamer, L. J., Grothe, R., et al. (2000) · Journal of Molecular Biology · doi:10.1006/jmbi.2000.3805 · Cited by 48 · see citing works

MALISAM: a database of structurally analogous motifs in proteins

Cheng, H., Kim, B., & Grishin, N. V. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm698 · Cited by 47 · see citing works

Structurally Analogous Proteins Do Exist!

Krishna, S., & Grishin, N. V. (2004) · Structure · doi:10.1016/j.str.2004.06.004 · Cited by 42 · see citing works

Protein structure prediction center in CASP8

Kryshtafovych, A., Krysko, O., Daniluk, P., et al. (2009) · Proteins Structure Function and Bioinformatics · doi:10.1002/prot.22517 · Cited by 38 · see citing works

Bioinformatic insights to the ESAG5 and GRESAG5 gene families in kinetoplastid parasites

Barker, A., Wickstead, B., Gluenz, E., & Keith Gull, B. (2008) · Molecular and Biochemical Parasitology · doi:10.1016/j.molbiopara.2008.08.003 · Cited by 14 · see citing works

Endoplasmic reticulum-mitochondria contacts: Function of the junction

Rowland, A. A., & Voeltz, G. K. (2012) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm3440 · Cited by 1,018 · see citing works

Endoplasmic reticulum-mitochondrial contactology: structure and signaling functions

Csordás, G., Weaver, D., & Hajnóczky, G. (2018) · Trends in Cell Biology · doi:10.1016/j.tcb.2018.02.009 · Cited by 625 · see citing works

Organization and Function of Membrane Contact Sites

Helle, S. C. J., Kanfer, G., Kolar, K., Lang, A., Michel, A. H., & Kornmann, B. (2013) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2013.01.028 · Cited by 453 · see citing works

The Conserved GTPase Gem1 Regulates Endoplasmic Reticulum–Mitochondria Connections

Kornmann, B., Osman, C., & Walter, P. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1111314108 · Cited by 335 · see citing works

Staying in Touch: The Molecular Era of Organelle Contact Sites

Elbaz, Y., & Schuldiner, M. (2011) · Trends in Biochemical Sciences · doi:10.1016/j.tibs.2011.08.004 · Cited by 226 · see citing works

Structure–Function Insights into Direct Lipid Transfer between Membranes by Mmm1–Mdm12 of ERMES

Kawano, S., Tamura, Y., Kojima, R., Bala, S., Asai, E., Michel, A. H., Kornmann, B., Riezman, I., Riezman, H., Sakae, Y., et al. (2018) · Journal of Cell Biology · doi:10.1083/jcb.201704119 · Cited by 148 · see citing works

Cell wall integrity is linked to mitochondria and phospholipid homeostasis in <i>Candida albicans</i> through the activity of the post‐transcriptional regulator Ccr4‐Pop2

Dagley, M. J., Gentle, I. E., Beilharz, T. H., Pettolino, F. A., Djordjevic, J. T., Lo, T. L., Uwamahoro, N., Rupasinghe, T., Tull, D. L., McConville, M., et al. (2011) · Molecular Microbiology · doi:10.1111/j.1365-2958.2010.07503.x · Cited by 128 · see citing works

In Candida glabrata, ERMES Component GEM1 Controls Mitochondrial Morphology, mtROS, and Drug Efflux Pump Expression, Resulting in Azole Susceptibility

Okamoto, M., Nakano, K., Takahashi-Nakaguchi, A., Sasamoto, K., Yamaguchi, M., Teixeira, M. C., & Chibana, H. (2023) · Journal of Fungi · doi:10.3390/jof9020240 · Cited by 11 · see citing works

Extent of cross-linking of amino-phospholipid neighbors in the erythrocyte membrane as influenced by the concentration of difluorodinitrobenzene

Marinetti, G. V., & Love, R. M. (1974) · Biochemical and Biophysical Research Communications · doi:10.1016/0006-291x(74)90529-4 · Cited by 40 · see citing works

Diabetes Affects Phospholipid Content in the Nuclei of the Rat Liver

Żendzian‐Piotrowska, M., Bucki, R., Górska, M., et al. (2000) · Hormone and Metabolic Research · doi:10.1055/s-2007-978659 · Cited by 6 · see citing works

Effect of clofibrate on the phospholipid biosynthesis in rat liver

Catalán, R. E., Castillón, M. P., & Priego, J. (1979) · Cellular and Molecular Life Sciences · doi:10.1007/bf01955111 · Cited by 3 · see citing works

The effect of N-terminal fragments of immunophilin on phospholipid composition of rat brain

Karaguezyan, K. G., Galoyan, A. A., Hovsepyan, L., et al. (1996) · Molecular Membrane Biology · doi:10.3109/09687689609160574

Direct Evidence for Antioxidant Effect of Bcl-2 in PC12 Rat Pheochromocytoma Cells

Tyurina, Y. Y., Tyurin, V. A., Carta, G., Quinn, P. J., Schor, N. F., & Kagan, V. E. (1997) · Archives of Biochemistry and Biophysics · doi:10.1006/abbi.1997.0201 · Cited by 81 · see citing works