The human oral microbiome database: a web accessible resource for investigating oral microbe taxonomic and genomic information

Chen, T., Yu, W.-H., Izard, J., Baranova, O. V., Lakshmanan, A., Dewhirst, F. E.·2010·Database

Cited by (999)

Items 901–999 of 999

  1. Palaeoproteomic investigation of an ancient human skeleton with abnormal deposition of dental calculus
    Yoko Uchida‐Fukuhara, Shigeru Shimamura, Rikai Sawafuji, Takumi Nishiuchi, Minoru Yoneda, Hajime Ishida, Hirofumi Matsumura, Takumi Tsutaya · 2024 · Scientific Reports
  2. Oral Microbiome and Its Implication on Systemic Diseases
    Chandrashekhar G. Unakal, Ramya Saravanakumar, Patrick Eberechi Akpaka, Bijay Pandit, Esther Daniel, Mohsin Khurshid · 2024 · Springer eBooks
  3. The MiiA motif is a common marker present in polytopic surface proteins of oral and urinary tract invasive bacteria
    Antonio J. Martín-Galiano · 2017 · Infection Genetics and Evolution
  4. Impacto do Tratamento Antineoplásico na Microbiota da Cavidade Oral e Orofaríngea de Pacientes Acometidos pelo Câncer de Cabeça e Pescoço: Revisão Sistemática
    Iran Alves da Silva, Larissa Karine Barbosa, Diego Belmiro do Nascimento Santos, Sibele Ribeiro de Oliveira, Cláudia Cristina Brainer de Oliveira Mota, Adrya Lúcia Peres · 2022 · Revista Brasileira de Cancerologia
  5. Features of local therapy of acute inflammatory diseases of the oropharynx in children
    T.V. Мarushko, А.О. Аsonov · 2018 · SOVREMENNAYA PEDIATRIYA
  6. Oral Anaerobic Microflora and Pregnancy Complication
    Irena Andonova, Vasil Iliev · 2021 · Open Access Macedonian Journal of Medical Sciences
  7. Microbial Principles of Peri-Implant Infections
    Daniel Manoil, Georgios N. Belibasakis · 2022 · Springer eBooks
  8. The Top 200 Cited Articles in Restorative Dentistry Between 1945-2019: Bibliometric Analysis Study
    Mustafa Demırcı, Ferda Karabay, Safa Tuncer, Neslihan Tekçe, Meriç Berkman · 2022 · Turkiye Klinikleri Journal of Dental Sciences
  9. Microbial community structure of different tongue fur types in patients with chronic gastritis.
    Wang Yanan, Yuan Li, Wang Li, X U Zhiyuan, Hua Ruan, Xiangdong Cheng, Dong Changwu · 2023 · PubMed Central
  10. The oral microbiota as part of the human microbiota – links to general health
    Daniel Belstrøm · 2020 · Den norske tannlegeforenings Tidende
  11. Fast functional annotation of metagenomic shotgun data by DNA alignment to a microbial gene catalog
    Stuart M. Brown, Yuhan Hao, Hao Chen, Bobby P. Laungani, Thahmina A. Ali, Changsu Dong, Carlos Lijeron, Baekdoo Kim, Konstantinos Krampis, Zhiheng Pei · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
  12. Microbiome in oral and maxillofacial surgery
    Won Lee · 2018 · 대한구강악안면외과학회지
  13. Human Phageprints: A high-resolution exploration of oral phages reveals globally-distributed phage families with individual-specific and temporally-stable community compositions
    Gita Mahmoudabadi, Kelsey Homyk, Adam Catching, Helen B. Foley, Arbel D. Tadmor, Ana Mahmoudabadi, Allison Cheung, Rob Phillips · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
  14. Metagenomic evidence for a polymicrobial signature of sepsis
    Cedric C.S. Tan, Mislav Acman, Lucy van Dorp, François Balloux · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  15. Manganese transport by Streptococcus sanguinis in acidic conditions and its impact on growth in vitro and in vivo
    Tanya Puccio, Alexander C. Schultz, Claudia A. Lizarraga, Ashley S. Bryant, David J. Culp, Robert A. Burne, Todd O. Kitten · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  16. Compositional analysis of the bacterial community in colostrum samples from women with gestational diabetes mellitus and obesity
    July Stephany Gámez-Valdez, José Francisco García-Mazcorro, Alan Heriberto Montoya Rincón, Dalia Liliana Rodríguez Reyes, Gelacio Jiménez Blanco, Melissa Tatiana Alanís Rodriguez, Rebeca Pérez‐Cabeza de Vaca, Mario René Alcorta-García, Marion E. G. Brunck, Victor Javier Lara Díaz et al. · 2020 · Research Square
  17. Harmonizing the oral-brain axis: Music-induced microbiota shifts in age-related cognitive disorders and healthy aging
    Lúa Castelo-Martínez, Nour El Zahraa Mallah, Andrea Cavenaghi, Laura Navarro, Federico Martinón‐Torres, Alberto Gómez‐Carballa, Antonio Salas · 2025 · medRxiv
  18. Oral microbiota profile is related to cognitive status in centenarians: a clinical and biological study
    Giuseppina Campisciano, Katia Rupel, Federica D’Amico, Mauro Tettamanti, Filomena Vella, Carolina Cason, Manola Comar, Silvia Turroni, Gabriella Marcon · 2025 · Maturitas
  19. The Microbe Directory: a centralized database for biological interpretation of microbiome data
    Maria A. Sierra, Krista A. Ryon, Mohith Reddy Arikatla, Radwa Elshafey, Hardik Bhaskar, Jacqueline Proszynski, Chandrima Bhattacharya, Heba Shaaban, David Danko, Pradeep M. Ambrose et al. · 2025 · Database
  20. Exhaled Carbon Monoxide Indicates Persistent Subgingival Dysbiosis After Periodontal Therapy
    Sophie Koehlen, Inga Harks, Johannes Matern, Karola Prior, Peter Eickholz, Katrin Lorenz, Ti‐Sun Kim, Thomas Kocher, Joerg Meyle, Doğan Kaner et al. · 2025 · Journal Of Clinical Periodontology
  21. Magnesium modulates the stress responses of oral streptococci to environmental and antibiotic challenges by altering cell envelope and nutrient transport pathways
    Surabhi Kirti Mishra · 2026 · Frontiers in Microbiology
  22. Advanced Sequencing Approaches for the Subgingival Microbiome: Technology Selection, Quality Control, and Best Practices in Periodontal Research
    Hadeel Mazin Akram, Saif S. Saliem · 2026 · Bacteria
  23. A generalizable cross-continent prediction of esophageal squamous cell carcinoma using the oral microbiome
    Shahd ElNaggar, Wenlong Carl Chen, Leanne Prodehl, Thomas Kekgatleope Marumo, Muhammed U. Khan, Christopher George Mathew, Paul Ruff, Jin Zhezhen, Alfred I. Neugut, Anil K. Rustgi et al. · 2026 · Communications Medicine
  24. Exploring Oral Microbiota for Probiotic Development: Identification and Antibiotic Resistance Profile of Promising Strains
    Lyudmila D. Timchenko, Гандрабурова Надежда Ивановна, Elena Kharina, Angelina Maratovna Morozova, Alexander Medvedev, Пенькова Надежда Ивановна, Andrey Ashotovich Nagdalian · 2025 · World Journal of Environmental Biosciences
  25. Salivary immune alteration persists after caries treatment
    Elisa Ximena Huerta-Garcia, Paola Andrea Camargo-Ayala, Nathalia Baptista Días, Fabiane M. Nachtigall, Leonardo S. Santos, César Rivera, Juliana Nunes Botelho · 2026 · Scientific Reports
  26. Mapping the subgingival HerBiome and HisBiome over the human healthspan
    Rahul R. Nikam, Kazune Pax, M. Snively Beverly, Purnima Kumar · 2026 · Journal of Periodontology
  27. Multi-omics analysis of associations between host demographics and saliva metabolome, sugar profiles, and microbiome profiles
    S. Noerman, A. Esberg, C. Mack, H. Ahmed, B. Egert, E. Nordin, C. Brunius, K. Hanhineva, Ingegerd Johansson, R. Landberg · 2026 · Scientific Reports
  28. Salivary pathobiont Klebsiella pneumoniae exacerbating periodontitis-related intestinal dyshomeostasis and accelerated metabolic syndrome
    Jinglu Lyu, Miaomiao Wu, Wei Wei, Jia Li, Kaixin Xiong, Xin Shen, Xiang Gao, Jingmei Yang, Mingyun Li, Boyu Tang · 2026 · Molecular Immunology
  29. Oral microbiome dysbiosis in primary Sjögren’s syndrome: a systematic review and meta-analysis
    Huihong Wu, Longyue Hu, Jincheng Pu, Lufei Yang, Fang Han, Yangqing Wang, Anxu Tu, Ronglin Gao, Kailong Lin, Yuanyuan Liang et al. · 2026 · Lara D. Veeken
  30. Metatranscriptomic insights into microbial network modulation and pathogen dynamics underlying healing outcomes in non-surgical periodontal treatment
    Ryota Kobayashi, Takahiko Shiba, Takahiko Nagai, Keiji Komatsu, Shunsuke Matsumura, WATANABE Takayasu, Takashi Nemoto, Koki Takada, Yasuo Takeuchi, Takanori Iwata · 2026 · ISME Communications
  31. Spatial ecology of the Capnocytophaga genus in the human oral cavity
    Jonathan J. Giacomini, Julian Torres‐Morales, Floyd E. Dewhirst, Gary G. Borisy, Jessica L. Mark Welch · 2026 · Microbiology Spectrum
  32. Small intestinal microbiota in Zambian children with stunting and severe acute malnutrition
    Monica N. Mweetwa, Kazi Ashan, Vanderlene Kung, Nathan P. McNulty, Ellen C. Besa, Michael J. Barratt, Joram M. Posma, Beatrice Amadi, Jeffrey I. Gordon, Paul M. Kelly · 2026 · Philosophical Transactions of the Royal Society B Biological Sciences
  33. Shotgun metagenomic mapping of saliva reveals insights into diversity and function of the oral microbiome in pregnancy
    Nagihan Bostancı, Anusha T. Antony, Angelika Silbereisen, Tina Esmaili, Maria Christine Krog, Irene Sterpu, Zahra Bashir, Lars G. Engstrand, Eva Wiberg‐Itzel, Henriette Svarre Nielsen et al. · 2026 · Scientific Reports
  34. Salivary estrone and estradiol are associated with oral microbiome profiles in aging women
    Maria J. Rus, Maria R. Nieto, Hyo-Jung Oh, H.-J. Yoo, Victoria Areal‐Quecuty, Flávio Duarte Faria, Débora Lendines‐Cordero, Áurea Simón‐Soro · 2026 · Journal of Oral Microbiology
  35. Vitamin D as a candidate host susceptibility factor in sugar-driven oral dysbiosis
    Moldir Turaliyeva, Nuraly Sh. Akimbekov, Ilya Digel, Adil Y. Yerezhepov, Mohammed Shawkat Razzaque · 2026 · Frontiers in Oral Health
  36. A conserved Inner Membrane Protein of Aggregatibacter actinomycetemcomitans is integral for membrane function
    Kenny Smith · 2015 · ScholarWorks -A service of University of Vermont Libraries (University of Vermont)
  37. Application of Meta‐Mesh on the analysis of microbial communities from human associated‐habitats
    Xiaoquan Su, Xiaojun Wang, Gongchao Jing, Shi Wei Huang, Jian Xu, Kang Ning · 2015 · Quantitative Biology
  38. Data Integration Solution for Organ-Specific Studies: An Application for Oral Biology
    José Melo, Joel Perdiz Arrais, Edgar D. Coelho, Pedro C. Lopes, Nuno das Neves Rosa, Maria José Correia, Marlene Barros, José Luís Oliveira · 2013 · Communications in computer and information science
  39. WEB INFORMATION SYSTEM FOR THE STUDY OF ORAL HEALTH
    José Melo, Joel Perdiz Arrais, Pedro Henrique de Meneses Bittencourt Lopes, Nuno das Neves Rosa, Maria José Correia, Marlene Barros, José Luís Oliveira · 2018 · Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT)
  40. Metagenomics for Bacteriology
    Erika del Castillo, Jacques Izard · 2014 · Elsevier eBooks
  41. Metagenomic rDNA Profiles of the Oral Microbiome in Healthy Subjects Are Distinctive Compared to That in Smokers and Disease Subjects Despite High Variations between Subjects
    Shreyasee Chakraborty, Nwadiuto Esiobu · 2017 · Advances in Microbiology
  42. Genome Sequencing of Microbes
    Caitriona M. Guinane, Michael J. Callanan · 2018 · Elsevier eBooks
  43. Microbiome Shifts in the Supragingival Biofilm in Patients Undergoing Orthodontic Treatment with Fixed Appliances: A Pilot Study
    Ashley Morgenstern · 2019 · Carolina Digital Repository (University of North Carolina at Chapel Hill)
  44. Study on the difference of saliva flora between smokers and non-smokers
    Jie Li, Xuzhu Shen · 2019 · AIP conference proceedings
  45. Dysbiosis of the Oral Microbiome: Association with and Prevention of Human Diseases
    Zhongwei Zhang, Wei Yang, Stanley T. Omaye · 2019 · Food and Nutrition Sciences
  46. The Effect of Diet and Natural Agents on Oral, Periodontal Health and Dentistry
    Gaetano Isola · 2020 · MDPI eBooks
  47. WEB INFORMATION SYSTEM FOR THE STUDY OF ORAL HEALTH
    José Melo, Joel Perdiz Arrais, Pedro Henrique de Meneses Bittencourt Lopes, Nuno das Neves Rosa, Maria José Correia, Marlene Barros, José Luís Oliveira · 2012 · International Conference on Health Informatics
  48. An Investigation on the Oral Microbiota in Plaque Samples during Orthodontic Treatment
    Shantha Sundari, R. Rajagopal, Rajagopalan Vijayaraghavan, S. Sasidharan · 2022 · Journal of Pharmaceutical Research International
  49. Oral Microbiome: Metagenomics in Oral Health
    2017 · American Research Journal of Dentistry
  50. Screening of periodontal disease related Bacteria in Iraqi patients and their relationship with salivary TLR2 and IL-6 level
    Fatima Hussein, Moroj Abdul Sattar · 2023 · Iraqi Journal of Science
  51. Screening of heat-killed lactic acid bacteria based on inhibitory activity against oral bacteria and effects of oral administration of heat-killed Ligilactobacillus salivarius CP3365 on periodontal health in healthy participants: a double-blinded, randomized, placebo-controlled trial
    S. Sakata, Yukie Sakamaki, M. Yuki, T. Sugaya, Tatsuhiko Hirota · 2023 · Journal of Oral Microbiology
  52. Genética humana e molecular: um olhar multidisciplinar
    Luana da Silva Ferreira, Matheus Correia Casotti, Luana Santos Louro, Gabriel Mendonça Santana, Thomas Erik Santos Louro, Pablo G. Cavalcanti, Sônia Groisman, Elizeu Fagundes de Carvalho, Iúri Drumond Louro, Eldamária V. W. Santos et al. · 2023
  53. An Introduction to the Human Microbiome
    Prashanth Kotthapalli, Ann Catherine Archer · 2024 · Springer eBooks
  54. Data science to biologists: Insights into microbiomics
    Ramu Meenatchi, Saqib Hassan, P. Snega Priya, Karamveer Karamveer, Ragothaman Prathiviraj, Ajay Guru, Jesu Arockiaraj · 2024 · Elsevier eBooks
  55. Metagenomics: Implications in oral health and disease
    Vandana R. Prabhu, Karippadakam Bhavana, Priya Nimish Deo, Aparna Suresh, Ranganathan Kamalakkannan, Muniyandi Nagarajan · 2024 · Elsevier eBooks
  56. Oral microbial profiles in young adults with cannabis use disorder
    Brittney D. Browning, Rachel L. Tomko, Anna E. Kirkland, Rachel Visontay, Pamela Lynn Ferguson, Alexander V. Alekseyenko, Melinda Anne Engevik, Louise R. Mewton, Lindsay M. Squeglia · 2025 · Drug and Alcohol Dependence
  57. Pathogenic bacteria enriched in the oral microbiota might be associated with recurrent pulmonary infections in elderly individuals
    Jingyi Xu, Ruyi Qu, Keke Yang, Yuezhu Wang, Meiyun Nie, Xiaodong Qi, Huajun Zheng, Ling Yang · 2025 · Aging Clinical and Experimental Research
  58. Association of Herpes Virus Type 1, Cytomegalo Virus and Epstein–Barr Virus to the Pathogenesis of Peri-Implantitis: A Cross-Sectional Study
    Ioana Maria Suciu, Simona Maria Ruță, George Dan Suciu · 2025 · Dentistry Journal
  59. Oral microbiology in the microbiome era - when, how and why to perform microbiological diagnostics
    Hanna Välimaa, Inga Fröding, Ellen Frandsen Lau · 2018 · Den norske tannlegeforenings Tidende
  60. The Oral Microbiome
    Marcelle Matos Nascimento · 2019 · Elsevier eBooks
  61. Microbiota, Sports and Exercise Medicine
    Ke Shen, Bairong Shen · 2022 · Springer eBooks
  62. Computational Tools for Taxonomic Assignment
    Noah G. Hoffman, Frederick A. Matsen IV · 2013 · Springer eBooks
  63. Placental, oral and vaginal microbiomes and birth outcomes in rural Malawi
    Ronan Doyle · 2016 · UCL Discovery (University College London)
  64. Linking sequence to function in microbial genomics
    Sarah J. Spencer · 2017 · DSpace@MIT (Massachusetts Institute of Technology)
  65. Relative Reduction of the Biological and phylogenetic diversity of oral microbiome in diabetic and pre-diabetic subjects
    Amr T. M. Saeb, Khalid A Al-Rubeaan, Khalid M. Aldosary, G. K. Udaya Raja, Balavenkatesh Mani, Mohamed Ibrahim Abouelhoda, Hamsa T. Tayeb · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
  66. Características del biofilm oral formado sobre implantes dentales
    Berta Cortés · 2019 · Tesis Doctorals en Xarxa (Consorci de Serveis Universitaris de Catalunya)
  67. Characterization of the oral microbiome of medically controlled type-2 diabetes patients
    Ana C. Almeida-Santos, Daniela Martins‐Mendes, Magdalena Gayà‐Vidal, Lucía Pérez-Pardal, Albano Beja‐Pereira · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  68. The relationship between tooth extraction and changes in blood microbiome in horses
    Kile S. Townsend · 2021
  69. Computational Tools for Taxonomic Assignment
    Noah G. Hoffman, Frederick A. Matsen IV · 2015 · Springer eBooks
  70. Variations in microbiota populations in chronic periodontits patients compared to healthy controls
    Turki S. Abujamel, Shaima M. Alhazmi, Motaz B. Assas, Mushref Bakri Assas, Nadine Moubayed, Munerah Saleh BinShabaib, Shatha Subhi ALHarthi, Kawther Aabed · 2024 · Research Square
  71. BONCAT-Live for isolation and cultivation of active environmental microbes
    Sayali A. Mulay, Tatiana A. Vishnivetskaya, Leah H. Hochanadel, Dawn M. Klingeman, Karen G. Lloyd, Dale A. Pelletier, Mircea Podar · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  72. Metaproteomics analysis to study functionalities of the gut microbiota in large cohorts
    Ariane Bassignani · 2019 · theses.fr (ABES)
  73. Reproducible ecological restructuring of the oral microbiome defines the oral-gut axis in Crohn’s disease
    RJ. Whelan, David I F Wands, Peter J. Rimmer, R. Hansen, DC Wilson, Gordon William Moran, Imai J., Georgina Hold, Ilc Chapple, T. Iqbal et al. · 2026 · medRxiv
  74. ZipStrain Enables Rapid and Precise Strain-Resolved Metagenomics
    Parsa Ghadermazi, Joanne Emerson, Matthew R. Olm · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
  75. Treponomics:Treponema denticolaGenome and Functions
    J. Christopher Fenno · 2011
  76. Insights into Genus Veillonella in the Genomics Era
    Natalia I. Chalmers, Tsute Chen, Christopher V. Hughes · 2011
  77. Evaluation of salivary microbiota from an ecological perspective
    Toru Takeshita, Yoshihisa Yamashita · 2012 · Journal of Oral Biosciences
  78. Storage Stability and Folate Requirements of a Commercial Probiotic Bifidobacteria and Bifidobacterium longum DJO10A
    Ömer Çelik · 2013 · University of Minnesota Digital Conservancy (University of Minnesota)
  79. Trends and Developments in Bioinformatics in 2010: Prospects and Perspectives
    Alexander V. Alekseyenko, Yindalon Aphinyanaphongs, Stuart M. Brown, David Fenyö, L. Fu, S. Shen, Alexander Statnikov, Jing Wang, Constantin Aliferis · 2011 · Yearbook of Medical Informatics
  80. Oral microflora in children with hematologic malignancies
    Maria F. Vecherkovskaya, Г В Тец, Boris V. Afanasiev, В В Тец · 2015 · Oncohematology
  81. The special features of early diagnosis of nonstreptococcus tonsillopharyngitis in children
    Лорина Алімівна Іванова, У И Марусик, И Б Горбатюк · 2016 · ScienceRise
  82. Conocimiento de la microbiota de la cavidad oral a través de la metagenómica
    Hector Alejandro Serrano Coll, Miryan Margot Sánchez‐Jiménez, Nora María Cardona-Castro · 2015 · Dialnet (Universidad de la Rioja)
  83. A new probiotic approach for the prevention and/or treatment of dental caries, oral candidiasis and periodontal diseases
    Shyamali Saha · 2015 · eScholarship@McGill (McGill)
  84. Competition between novel Streptococcus spp. from the human oral cavity
    David Stancyk · 2014
  85. Microbial Perspectives in the Twenty‐First Century
    William G. Wade · 2017 · Wiley eBooks
  86. An Effective Approach for Cloud-Based Microbial Metagenomics Analysis
    Jia-Ying Lin, Wenqing Luo, Wen-Pei Chen, Ming‐Li Liou, Suh‐Jen Jane Tsai, Yaw-Ling Lin · 2016 · International Computer Symposium
  87. The influence of human genetics and environment on the salivary microbiota
    Simone S. Stahringer · 2013 · CU Scholar (University of Colorado Boulder)
  88. Treg regulation in periodontal disease during pregnancy.
    Aislinn L. Hays · 2017
  89. Nuevos tiempos clínicos para Streptococcus vestibularis
    Carlos Jiménez-Mascuñán, José Gutiérrez Fernández · 2018 · Revista del Laboratorio Clínico
  90. The role of wound healing in oral health
    Marcela M. Fernandez-Gutierrez · 2018
  91. Omics Approaches in Viral Biotechnology
    Kinza Waqar, Rija Irfan, Alvina Gul · 2018 · Elsevier eBooks
  92. Peer Review #1 of "Molecular analysis of oral microflora in patients with primary Sjögren’s syndrome by using high-throughput sequencing (v0.1)"
    2018 · PeerJ
  93. Peer Review #2 of "Gastric Helicobacter pylori infection perturbs human oral microbiota (v0.1)"
    2019 · PeerJ
  94. Peer Review #2 of "Gastric Helicobacter pylori infection perturbs human oral microbiota (v0.2)"
    2019 · PeerJ
  95. Peer Review #1 of "Molecular analysis of oral microflora in patients with primary Sjögren’s syndrome by using high-throughput sequencing (v0.2)"
    2018 · PeerJ
  96. Constrained Gene Block Discovery and Its Application to Prokaryotic Genomes
    Jonathan Engel, Isana Veksler‐Lublinsky, Michal Ziv-Ukelson · 2019 · Journal of Computational Biology
  97. Phylogenetics and the human microbiome
    Frederick A. Matsen IV · 2014 · arXiv (Cornell University)
  98. До питання етіологічної діагностики тонзилофарингітів у дітей
    О.К. Koloskova, Лорина Алімівна Іванова, О В Белашова, U.I. Marusyk · 2014 · ACTUAL INFECTOLOGY
  99. Microbiota development and mucosal IgA responses during childhood in health and allergic disease
    Majda Dzidic · 2019