The human oral microbiome database: a web accessible resource for investigating oral microbe taxonomic and genomic information

Chen, T., Yu, W.-H., Izard, J., Baranova, O. V., Lakshmanan, A., Dewhirst, F. E.·2010·Database

Cited by (999)

Items 501–600 of 999

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  2. Disinfection efficacy of sodium hypochlorite and glutaraldehyde and their effects on the dimensional stability and surface properties of dental impressions: a systematic review
    Yuan Qiu, Jiawei Xu, Yuedan Xu, Zhiwei Shi, Yinlin Wang, Ling Zhang, Baiping Fu · 2023 · PeerJ
  3. Impact of surface characteristics on the peri‐implant microbiome in health and disease
    Khaled H. Sinjab, Shriya Sawant, Alice Ou, J. Christopher Fenno, Hom‐Lay Wang, Purnima Kumar · 2023 · Journal of Periodontology
  4. Species-Level Identification of Actinomyces Isolates Causing Invasive Infections: Multiyear Comparison of Vitek MS (Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry) to Partial Sequencing of the 16S rRNA Gene
    Tarah Lynch, Daniel B. Gregson, Deirdre L. Church · 2016 · Journal of Clinical Microbiology
  5. A novel compound to maintain a healthy oral plaque ecology in vitro
    Marleen Marga Janus, Wim Crielaard A, Egija Zaura, Bart J. F. Keijser, Bernd Willem Brandt, Bastiaan Philip Krom · 2016 · Journal of Oral Microbiology
  6. World Workshop on Oral Medicine VII: Targeting the microbiome for oral medicine specialists—Part 1. A methodological guide
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  7. Transition of Bacterial Diversity and Composition in Tongue Microbiota during the First Two Years of Life
    Shinya Kageyama, Mikari Asakawa, Toru Takeshita, Yukari Ihara, Shunsuke Kanno, Toshiro Hara, Ichiro Takahashi, Yoshihisa Yamashita · 2019 · mSphere
  8. A potential oral microbiome signature associated with coronary artery disease in Tunisia
    Fériel Bouzid, Imen Gtif, Suad M. AlFadhli, Salma Charfeddine, Walid Ghorbel, Rania Abdelhédi, Riadh Benmarzoug, Leïla Abid, Nouha Bouayed Abdelmoula, Inés Elloumi et al. · 2022 · Bioscience Reports
  9. Salivary pellicle modulates biofilm formation on titanium surfaces
    Miryam Martínez‐Hernández, Juan Pablo Reyes‐Grajeda, Matthias Hannig, Argelia Almaguer‐Flores · 2023 · Clinical Oral Investigations
  10. Saliva microbiome profiling by full-gene 16S rRNA Oxford Nanopore Technology versus Illumina MiSeq sequencing
    Anders Esberg, Niklas Fries, Simon J. Haworth, Ingegerd Johansson · 2024 · npj Biofilms and Microbiomes
  11. Advances, practice, and clinical perspectives in high‐throughput sequencing
    S‐J Park, Mihoko Saito-Adachi, Y Komiyama, Kenta Nakai · 2015 · Oral Diseases
  12. MGS-Fast: Metagenomic shotgun data fast annotation using microbial gene catalogs
    Stuart M. Brown, Hao Chen, Yuhan Hao, Bobby P. Laungani, Thahmina A. Ali, Changsu Dong, Carlos Lijeron, Baekdoo Kim, Claudia Wultsch, Zhiheng Pei et al. · 2019 · GigaScience
  13. Deep sequencing of biofilm microbiomes on dental composite materials
    Georg Conrads, Laura Katharina Wendt, Franziska Hetrodt, Zhi-Luo Deng, Dietmar Helmut Pieper, Mohamed M. H. Abdelbary, Andree Barg, Irene Wagner‐Döbler, Christian Apel · 2019 · Journal of Oral Microbiology
  14. Compositional Shift of Oral Microbiota Following Surgical Resection of Tongue Cancer
    Shinya Kageyama, Yuka Nagao, Jiale Ma, Mikari Asakawa, Ryoji Yoshida, Toru Takeshita, Akiyuki Hirosue, Yoshihisa Yamashita, Hideki Nakayama · 2020 · Frontiers in Cellular and Infection Microbiology
  15. Alterations in subgingival microbiota during full‐fixed appliance orthodontic treatment—A prospective study
    Isaac Chen, Jennifer Chung, Raven Vella, George M. Weinstock, Yanjiao Zhou, Andrew H. Jheon · 2021 · Orthodontics and Craniofacial Research
  16. Influence of probiotics on the periodontium, the oral microbiota and the immune response during orthodontic treatment in adolescent and adult patients (ProMB Trial): study protocol for a prospective, double-blind, controlled, randomized clinical trial
    Corinna Lesley Seidel, Roman G. Gerlach, Matthias Weider, Theresa Wölfel, Vincent Schwarz, Armin Ströbel, Helga Maria Schmetzer, Christian Bogdan, Lina Gölz · 2022 · BMC Oral Health
  17. Ecology, Not Host Phylogeny, Shapes the Oral Microbiome in Closely Related Species
    Markella Moraitou, Adrian Forsythe, James A. Fellows Yates, Jaelle C. Brealey, Christina Warinner, Katerina Guschanski · 2022 · Molecular Biology and Evolution
  18. Microbial Symphony: Navigating the Intricacies of the Human Oral Microbiome and Its Impact on Health
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  19. RNA‐oligonucleotide quantification technique (ROQT) for the enumeration of uncultivated bacterial species in subgingival biofilms
    Flavia Teles, Ricardo Palmier Teles, Y. Siegelin, Bruce J. Paster, Anne D. Haffajee, S. S. Socransky · 2011 · Molecular Oral Microbiology
  20. A Metagenomic Insight Into the Human Microbiome
    Rituja Saxena, Vineet K. Sharma · 2016 · Elsevier eBooks
  21. The Impact of Maltitol-Sweetened Chewing Gum on the Dental Plaque Biofilm Microbiota Composition
    Bart J. F. Keijser, Tim J. van den Broek, Dagmar Else Slot, Lodewic van Twillert, Jolanda Kool, Clémentine Thabuis, Michel Ossendrijver, G.A. van der Weijden, Roy C. Montijn · 2018 · Frontiers in Microbiology
  22. Impaired oral health: a required companion of bacterial aspiration pneumonia
    John R. Ashford · 2024 · Frontiers in Rehabilitation Sciences
  23. Computational Metagenomics: State of the Art
    Marco Antonio Pita-Galeana, Martín Ruhle, Lucía López-Vázquez, Guillermo de Anda‐Jáuregui, Enrique Hernandez Lemus · 2025 · International Journal of Molecular Sciences
  24. Microbiome interaction with sugar plays an important role in relapse of childhood caries
    Jing Tian, Man Qin, Wenli Ma, Bin Xia, He Xu, Qian Zhang, Feng Chen · 2015 · Biochemical and Biophysical Research Communications
  25. Bacterial Colonization and Tissue Compatibility of Denture Base Resins
    Constanze Olms, Maryam Yahiaoui‐Doktor, Torsten W. Remmerbach, Cătălina Suzana Stîngu · 2018 · Dentistry Journal
  26. Long-Term Analysis of Resilience of the Oral Microbiome in Allogeneic Stem Cell Transplant Recipients
    Alexa M. G. A. Laheij, Frederik Reinder Rozema, Michael Thomas Brennan, Inger v. Bültzingslöwen, Stephanie J. M. van Leeuwen, Carin M. J. Potting, M.C.D.N.J.M. Huysmans, Mette D. Hazenberg, Bernd Willem Brandt, Egija Zaura et al. · 2022 · Microorganisms
  27. Particle Size, Mass Concentration, and Microbiota in Dental Aerosols
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  28. Functional biomes beyond the bacteriome in the oral ecosystem
    A. S. Smiline Girija, Pitchaipillai Sankar Ganesh · 2022 · Japanese Dental Science Review
  29. Impact of peri‐implantitis on the proteome biology of crevicular fluid: A pilot study
    Tim Halstenbach, Katja Nelson, Gerhard Iglhaut, Oliver Schilling, Tobias Fretwurst · 2022 · Journal of Periodontology
  30. In silico evaluation and selection of the best 16S rRNA gene primers for use in next-generation sequencing to detect oral bacteria and archaea
    Alba Regueira‐Iglesias, Lara Vázquez-González, Carlos Balsa‐Castro, Nicolás Vila-Blanco, Triana Blanco‐Pintos, Javier Tamames, Marı́a J. Carreira, Inmaculada Tomás · 2023 · Microbiome
  31. Characterization of the Porphyromonas gingivalis conjugative transposon CTnPg1: determination of the integration site and the genes essential for conjugal transfer
    Mariko Naito, Keiko Sato, Mikio Shoji, Hideharu Yukitake, Yoshitoshi Ogura, Tetsuya Hayashi, Koji Nakayama · 2011 · Microbiology
  32. Danger signals in oral cavity-related diseases
    Jason G. Kay, Jill M. Kramer, Michelle B. Visser · 2019 · Journal of Leukocyte Biology
  33. ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis
    Arshag D. Mooradian, Sjoerd van der Post, Kristen M. Naegle, Jason M. Held · 2020 · PLoS Computational Biology
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    Yichen Hu, Amnon Amir, Xiaochang Huang, Yan Li, Shi Wei Huang, Elaine Wolfe, Sophie J. Weiss, Rob D. Knight, Zhenjiang Zech Xu · 2022 · Genome Research
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  37. A Review of Next-Generation Probiotics—As a Gateway to Biotherapeutics
    A. Vijayaganapathi, V Mohanasrinivasan · 2025 · Probiotics and Antimicrobial Proteins
  38. Red fluorescence of dental plaque in children —A cross-sectional study
    C.M.C. Volgenant, Egija Zaura, Bernd Willem Brandt, Mark J. Buijs, Marisol Téllez, Gayatri Malik, Amid Ibrahim Ismail, Jacob M. ten Cate, Monique Harriët van der Veen · 2017 · Journal of Dentistry
  39. Self-reported bovine milk intake is associated with oral microbiota composition
    Ingegerd Johansson, Anders Esberg, Linda Eriksson, Simon J. Haworth, Pernilla Lif Holgerson · 2018 · PLoS ONE
  40. Distribution of dipeptidyl peptidase (DPP) 4, DPP5, DPP7, and DPP11 in human oral microbiota – potent biomarkers indicating presence of periodontopathic bacteria
    Yuko Ohara‐Nemoto, Yu Shimoyama, Manami Nakasato, Haruka Nishimata, Taichi Ishikawa, Minoru Sasaki, Shigenobu Kimura, Takayuki Nemoto · 2018 · FEMS Microbiology Letters
  41. In vitro adherence of Candida albicans to zirconia surfaces
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  42. Free-Flow Isoelectric Focusing for Comprehensive Separation and Analysis of Human Salivary Microbiome for Lung Cancer
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  44. Small molecule natural products in human nasal/oral microbiota
    Colin Charles Barber, Wenjun Zhang · 2021 · Journal of Industrial Microbiology & Biotechnology
  45. Oral Microbiome and Host Health: Review on Current Advances in Genome-Wide Analysis
    Young‐Dan Cho, Kyoung-Hwa Kim, Yong‐Moo Lee, Young Ku, Yang‐Jo Seol · 2021 · Applied Sciences
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  48. Symbiotic microbial communities in various locations of the lung cancer respiratory tract along with potential host immunological processes affected
    Jiuling Cheng, Lujia Zhou, Huaqi Wang · 2024 · Frontiers in Cellular and Infection Microbiology
  49. Molecular commensalism: how oral corynebacteria and their extracellular membrane vesicles shape microbiome interactions
    Jens Kreth, Emily E. Helliwell, Puthayalai Treerat, Justin L. Merritt · 2024 · Frontiers in Oral Health
  50. Probing Oral Microbial Functionality – Expression of spxB in Plaque Samples
    Lin Dan Zhu, Yifan Xu, Joseph J. Ferretti, Jens Kreth · 2014 · PLoS ONE
  51. The oral‐systemic personalized medicine model at Marshfield Clinic
    Ingrid Glurich, Amit Acharya, SK Shukla, Gregory R. Nycz, MH Brilliant · 2012 · Oral Diseases
  52. Heterogeneous lineage-specific arginine deiminase expression within dental microbiome species
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  58. Host–microbiome interactions in apical periodontitis: The endodontic microbiome in relation to circulatory immunologic markers
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  59. Effect of rinsing with ethanol-containing mouthrinses on the production of salivary acetaldehyde
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  60. Quorum sensing activity of Citrobacter amalonaticus L8A, a bacterium isolated from dental plaque
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  61. Salivary microbiomes of indigenous Tsimane mothers and infants are distinct despite frequent premastication
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  64. Biofilm community diversity after exposure to 0·4% stannous fluoride gels
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  87. Whey Protein Complexes with Green Tea Polyphenols: Antimicrobial, Osteoblast-Stimulatory, and Antioxidant Activities
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  88. Epstein–Barr Virus—Oral Bacterial Link in the Development of Oral Squamous Cell Carcinoma
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  91. Proteomics and Proteogenomics Approaches for Oral Diseases
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  93. The occurrence of peri‐implant mucositis associated with the shift of submucosal microbiome in patients with a history of periodontitis during the first two years
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