The human oral microbiome database: a web accessible resource for investigating oral microbe taxonomic and genomic information

Chen, T., Yu, W.-H., Izard, J., Baranova, O. V., Lakshmanan, A., Dewhirst, F. E.·2010·Database

Cited by (999)

Items 401–500 of 999

  1. Oral Microbial Shift: Factors affecting the Microbiome and Prevention of Oral Disease
    Kusai Baroudi, Rushabh Dagli, Namrata Dagli, Shrouq Darwish · 2016 · The Journal of Contemporary Dental Practice
  2. Characterization of oral microbiota and acetaldehyde production
    Shigeyuki Yokoyama, Kenji Takeuchi, Yukie Shibata, Shinya Kageyama, Rie Matsumi, Toru Takeshita, Yoshihisa Yamashita · 2018 · Journal of Oral Microbiology
  3. 16S metagenomics for diagnosis of bloodstream infections: opportunities and pitfalls
    Jean Pierre Rutanga, Sandra Van Puyvelde, Anne‐Sophie Heroes, Claude Mambo Muvunyi, Jan Adriaan Jacobs, Stijn Deborggraeve · 2018 · Expert Review of Molecular Diagnostics
  4. The Oral Bacterium Fusobacterium nucleatum Binds Staphylococcus aureus and Alters Expression of the Staphylococcal Accessory Regulator sarA
    Bruno P. Lima, Linda I. Hu, Gerrit W. Vreeman, Douglas B. Weibel, Renate Lux · 2018 · Microbial Ecology
  5. Modulation of Candida albicans virulence in in vitro biofilms by oral bacteria
    Daniel James Morse, M.J. Wilson, Xiaoqing Wei, David J. Bradshaw, Michael A. O. Lewis, David Wynne Williams · 2019 · Letters in Applied Microbiology
  6. The Bacterial Microbiota of Gastrointestinal Cancers: Role in Cancer Pathogenesis and Therapeutic Perspectives
    Lina Elsalem, Ahmad A. Jum’ah, Mahmoud A. Alfaqih, Osama Aloudat · 2020 · Clinical and Experimental Gastroenterology
  7. Effects of the UK Biobank collection protocol on potential biomarkers in saliva
    Rashida Pramanik, Hayley Thompson, James O. Kistler, William G. Wade, John W. Galloway, Tim C. Peakman, Gordon Proctor · 2012 · International Journal of Epidemiology
  8. Harnessing actinobacteria potential for cancer prevention and treatment
    Yimtar L. Pongen, Durairaj Thirumurugan, Ramasamy Ramasubburayan, S. Prakash · 2023 · Microbial Pathogenesis
  9. In Vitro Culture of Previously Uncultured Oral Bacterial Phylotypes
    Hayley Thompson, Alexandra Rybalka, Rebecca Moazzez, Floyd E. Dewhirst, William G. Wade · 2015 · Applied and Environmental Microbiology
  10. Periodontitis and the microbiome: a systematic review and meta-analysis
    Fabrizio Guerra, Marta Mazur, Artnora Ndokaj, Denise Corridore, Giuseppe La Torre, Antonella Polimeni, Livia Ottolenghi · 2018 · Minerva Dental and Oral Science
  11. Akkermansia and Microbial Degradation of Mucus in Cats and Dogs: Implications to the Growing Worldwide Epidemic of Pet Obesity
    José F. García-Mazcorro, Yasushi Minamoto, Jorge R. Kawas, Jan S. Suchodolski, Willem M. de Vos · 2020 · Veterinary Sciences
  12. Anaerobic bacterial communities associated with oral carcinoma: Intratumoral, surface-biofilm and salivary microbiota
    János Minárovits · 2020 · Anaerobe
  13. Probing periodontal microbial dark matter using metataxonomics and metagenomics
    Purnima Kumar, Shareef M. Dabdoub, Sukirth M. Ganesan · 2020 · Periodontology 2000
  14. Effect of adjunctive systemic antibiotics on microbial populations compared with scaling and root planing alone for the treatment of periodontitis: A pilot randomized clinical trial
    Hongye Lu, Lu He, Dongsiqi Jin, Yunxuan Zhu, Huanxin Meng · 2021 · Journal of Periodontology
  15. Interdental and subgingival microbiota may affect the tongue microbial ecology and oral malodour in health, gingivitis and periodontitis
    Abish S. Stephen, Narinder Dhadwal, Vamshidhar Nagala, Cecilia Gonzales‐Marin, David Geoffrey Gillam, David J. Bradshaw, Gary R. Burnett, Robert Patrick Allaker · 2021 · Journal of Periodontal Research
  16. Salivary Microbiota Composition in Patients with Oral Squamous Cell Carcinoma: A Systematic Review
    Rodolfo Mauceri, Martina Coppini, Davide Vacca, Giorgio Bertolazzi, Vera Panzarella, Olga Di Fede, Claudio Tripodo, Giuseppina Campisi · 2022 · Cancers
  17. Mucin-microbiome signatures shape the tumor microenvironment in gastric cancer
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  18. Illuminating the oral microbiome and its host interactions: recent advancements in omics and bioinformatics technologies in the context of oral microbiome research
    Jonathon L. Baker · 2023 · FEMS Microbiology Reviews
  19. Pathophysiological microenvironments in oral candidiasis
    Mette Rose Jørgensen · 2024 · Apmis
  20. The Oral–Gut Microbiota Axis Across the Lifespan: New Insights on a Forgotten Interaction
    Domenico Azzolino, Margherita Carnevale Schianca, Luigì Santacroce, Marica Colella, Alessia Felicetti, Leonardo Terranova, Roberto Carlos Castrejón‐Pérez, Franklin Garcı́a-Godoy, Tiziano Angelo Lucchi, Pier Carmine Passarelli · 2025 · Nutrients
  21. ‘Core species’ in three sources of indoor air belonging to the human micro-environment to the exclusion of outdoor air
    Carole Gaüzère, Jean‐Jacques Godon, Hélène Blanquart, Stéphanie Ferreira, Stéphane Moularat, Enric Robine, Marina Moletta‐Denat · 2014 · The Science of The Total Environment
  22. RiboFR-Seq: a novel approach to linking 16S rRNA amplicon profiles to metagenomes
    Yanming Zhang, Peifeng Ji, Jinfeng Wang, Fangqing Zhao · 2016 · Nucleic Acids Research
  23. Influence of chronic azithromycin treatment on the composition of the oropharyngeal microbial community in patients with severe asthma
    Guido Lopes dos Santos Santiago, Guy Brusselle, Kenny Dauwe, Pieter Deschaght, Chris Verhofstede, Dries Vaneechoutte, Ellen Deschepper, Paul Jordens, Guy Joos, Mario Vaneechoutte · 2017 · BMC Microbiology
  24. Carbonic Anhydrase 6 Gene Variation influences Oral Microbiota Composition and Caries Risk in Swedish adolescents
    Anders Esberg, Simon J. Haworth, Carl F. Brunius, Pernilla Lif Holgerson, Ingegerd Johansson · 2019 · Scientific Reports
  25. A case study of salivary microbiome in smokers and non-smokers in Hungary: analysis by shotgun metagenome sequencing
    Roland Wirth, Gergely Maróti, Róbert Mihók, Donát Simon-Fiala, Márk Ádám Antal, Bernadett Pap, Anett Demcsák, János Minárovits, Kornél L. Kovács · 2020 · Journal of Oral Microbiology
  26. Comparison of the oral microbial composition between healthy individuals and periodontitis patients in different oral sampling sites using 16S metagenome profiling
    Yeon‐Tae Kim, Jin-Uk Jeong, Seyoung Mun, Kyeongeui Yun, Kyudong Han, Seong‐Nyum Jeong · 2022 · Journal of Periodontal & Implant Science
  27. Omics profiles of fecal and oral microbiota change in irritable bowel syndrome patients with diarrhea and symptom exacerbation
    Yukari Tanaka, Riu Yamashita, Junko Kawashima, Hiroshi Mori, Ken Kurokawa, Shinji Fukuda, Yasuhiro Gotoh, Keiji Nakamura, Tetsuya Hayashi, Yoshiyuki Kasahara et al. · 2022 · Journal of Gastroenterology
  28. Breastmilk influences development and composition of the oral microbiome
    Catherine A. Butler, Geoffrey Grant Adams, Jordan Blum, Samantha J. Byrne, Lauren M. Carpenter, Mark G. Gussy, Hanny Calache, Deanne V. Catmull, Eric Charles Reynolds, Stuart G. Dashper · 2022 · Journal of Oral Microbiology
  29. Phages are unrecognized players in the ecology of the oral pathogen Porphyromonas gingivalis
    Cole B. Matrishin, Elaine M. Haase, Floyd E. Dewhirst, Jessica L. Mark Welch, Fabiola Miranda‐Sánchez, Tsute Chen, Donald C. MacFarland, Kathryn M. Kauffman · 2023 · Microbiome
  30. How to study biofilms: technological advancements in clinical biofilm research
    Leanne M. Cleaver, James A. Garnett · 2023 · Frontiers in Cellular and Infection Microbiology
  31. Equine peripheral and infundibular dental caries: A review and proposals for their investigation
    Dewi Borkent, P. M. Dixon · 2015 · Equine Veterinary Education
  32. Microbiology of Oral Biofilm-Dependent Diseases: Have We Made Significant Progress to Understand and Treat These Diseases?
    Ana Paula Vieira Colombo, Renata Martins do Souto, Carina Maciel Silva‐Boghossian, Rachel Miranda, Talita Gomes Baêta Lourenço · 2014 · Current Oral Health Reports
  33. Red fluorescent biofilm: the thick, the old, and the cariogenic
    C.M.C. Volgenant, Michel A. Hoogenkamp, Mark J. Buijs, Egija Zaura, Jacob M. ten Cate, Monique Harriët van der Veen · 2016 · Journal of Oral Microbiology
  34. First Cultivation of Health-Associated Tannerella sp. HOT-286 (BU063)
    Sonia R. Vartoukian, Rebecca Moazzez, Bruce J. Paster, Floyd E. Dewhirst, William G. Wade · 2016 · Journal of Dental Research
  35. Exploration of bacterial species associated with the salivary microbiome of individuals with a low susceptibility to dental caries
    Haruna Yasunaga, Toru Takeshita, Yukie Shibata, Michiko Furuta, Yoshihiro Shimazaki, Sumio Akifusa, Toshiharu Ninomiya, Yutaka Kiyohara, Ichiro Takahashi, Yoshihisa Yamashita · 2016 · Clinical Oral Investigations
  36. Regrowth of Microcosm Biofilms on Titanium Surfaces After Various Antimicrobial Treatments
    Qi Han, Yaling Jiang, Bernd Willem Brandt, Jingmei Yang, Yu Chen, Mark J. Buijs, Wim Crielaard A, Lei Cheng, Dongmei Deng · 2019 · Frontiers in Microbiology
  37. A Sectioning and Database Enrichment Approach for Improved Peptide Spectrum Matching in Large, Genome-Guided Protein Sequence Databases
    Praveen Kumar, James E. Johnson, Caleb Easterly, Subina Mehta, Ray Sajulga, Brook L. Nunn, Pratik Dilip Jagtap, Timothy J. Griffin · 2020 · Journal of Proteome Research
  38. A meta-analysis of the effect of binge drinking on the oral microbiome and its relation to Alzheimer’s disease
    Ayuni Yussof, Paul Yoon, Cayley Krkljes, Sarah Schweinberg, Jessica Ann Cottrell, Tin-Chun Chu, Sulie L. Chang · 2020 · Scientific Reports
  39. Mucosa-Associated Microbiota in Patients with Irritable Bowel Syndrome: A Comparison of Subtypes
    Hiroshi Matsumoto, Akiko Shiotani, Ryo Katsumata, Shinya Fukushima, Yukiko Handa, Motoyasu Osawa, Takahisa Murao, Osamu Handa, Eiji Umegaki, Ryo Inoüe et al. · 2020 · Digestion
  40. Oral Microbiome Is Associated With Incident Hypertension Among Postmenopausal Women
    Michael J. LaMonte, Joshua H. Gordon, Patricia Diaz‐Moreno, Christopher A. Andrews, Daichi Shimbo, Kathleen M. Hovey, Michael Joseph Buck, Jean Wactawski‐Wende · 2022 · Journal of the American Heart Association
  41. Bacterial composition in whole saliva from patients with severe hyposalivation – a case–control study
    Daniel Belstrøm, Palle Holmstrup, N‐E Fiehn, Kasper Rosing, Allan Bardow, Bruce J. Paster, Anne Marie Lynge Pedersen · 2016 · Oral Diseases
  42. The Adenoids but Not the Palatine Tonsils Serve as a Reservoir for Bacteria Associated with Secretory Otitis Media in Small Children
    Helena Fagö-Olsen, Laura Marie Dines, Christian Hjort Sørensen, Anders Jensen · 2019 · mSystems
  43. A catalog of bacterial reference genomes from cultivated human oral bacteria
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  44. Oral microbial signatures associated with age and frailty in Canadian adults
    Vanessa DeClercq, Robyn Wright, Jacob T. Nearing, Morgan G. I. Langille · 2024 · Scientific Reports
  45. Relationship between oral microbiota and colorectal cancer: A systematic review
    Sara Camañes‐Gonzalvo, Miriam Lobo, María José Safont‐Aguilera, Amaya B. Fernandez-Diaz, Andrés López Roldán, Vanessa Paredes‐Gallardo, Carlos Bellot‐Arcís · 2024 · Journal of Periodontal Research
  46. Metabolism of sugars by genetically diverse species of oral Leptotrichia
    John F. Thompson, Andreas Pikis · 2011 · Molecular Oral Microbiology
  47. A Novel Human Microbe-Disease Association Prediction Method Based on the Bidirectional Weighted Network
    Hao Li, Yuqi Wang, Jingwu Jiang, Haochen Zhao, Xiang Feng, Bihai Zhao, Lei Wang · 2019 · Frontiers in Microbiology
  48. Immune status, and not HIV infection or exposure, drives the development of the oral microbiota
    Modupe Oluseun Coker, Emmanuel F. Mongodin, Samer S. El‐Kamary, Paul Akhigbe, Obinna Obuekwe, Austin I. Omoigberale, PATRICIA W. LANGENBERG, C.O. Enwonwu, Lauren E. Hittle, William A. Blattner et al. · 2020 · Scientific Reports
  49. A 16S rRNA Gene and Draft Genome Database for the Murine Oral Bacterial Community
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  50. Phylogenetic group- and species-specific oligonucleotide probes for single-cell detection of lactic acid bacteria in oral biofilms
    Beatrice Quevedo, Elin Giertsen, Vincent Zijnge, Helga Lüthi-Schaller, Bernhard Guggenheim, Thomas Thurnheer, Rudolf Gmür · 2011 · BMC Microbiology
  51. Fecal transplant modifies urine chemistry risk factors for urinary stone disease
    Joshua M. Stern, Marcia M. Urban-Maldonado, Mykhaylo Usyk, Ignacio Granja, Daniel Schoenfeld, Kelvin Paul Davies, Ilir Agalliu, John Robert Asplin, Robert David Burk, Sylvia O. Suadicani · 2019 · Physiological Reports
  52. Distributions of Synergistetes in clinically-healthy and diseased periodontal and peri-implant niches
    Xiaolin Yu, Yuki Chan, Long‐Fei Zhuang, Hong-Chang Lai, Niklaus Peter Lang, Donnabella C. Lacap‐Bugler, Wai Keung Leung, Rory Munro Watt · 2015 · Microbial Pathogenesis
  53. Short‐term effects of povidone iodine and sodium fluoride therapy on plaque levels and microbiome diversity
    Cavan Reilly, M Goettl, M Steinmetz, Julia Nikrad, RS Jones · 2015 · Oral Diseases
  54. Mucosa-Associated Microbiota in the Gastrointestinal Tract of Healthy Japanese Subjects
    Saori Kashiwagi, Yuji Naito, Ryo Inoüe, Tomohisa Takagi, Takahiro Nakano, Yutaka Inada, Akifumi Fukui, Kazuhiro Katada, Katsura Mizushima, Kazuhiro Kamada et al. · 2019 · Digestion
  55. Mucosal-associated invariant T cells and oral microbiome in persistent apical periodontitis
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  56. Ancient DNA analysis of food remains in human dental calculus from the Edo period, Japan
    Rikai Sawafuji, Aiko Saso, Wataru Suda, Masahira Hattori, Shintaroh Ueda · 2020 · PLoS ONE
  57. Classification of 16S rRNA reads is improved using a niche-specific database constructed by near-full length sequencing
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  58. A survey on predicting microbe-disease associations: biological data and computational methods
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  59. The Role of Chronic Infection in Alzheimer’s Disease: Instigators, Co-conspirators, or Bystanders?
    Lauren Butler, Keenan A. Walker · 2021 · Current Clinical Microbiology Reports
  60. Ecosystem-specific microbiota and microbiome databases in the era of big data
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  61. Association between Gut Microbiota and Emotional-Behavioral Symptoms in Children with Attention-Deficit/Hyperactivity Disorder
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  62. Site-specialization of human oral Gemella species
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  70. Heritability of Oral Microbiota and Immune Responses to Oral Bacteria
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  71. Gene Sequence Analyses of the Healthy Oral Microbiome in Humans and Companion Animals
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  72. Effects of xylitol-containing chewing gum on the oral microbiota
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  73. Periodontal pathogens and clinical parameters in chronic periodontitis.
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  74. Repertoire of Bacterial Species Cultured from the Human Oral Cavity and Respiratory Tract
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  76. Long‐term changes in the subgingival microbiota in patients with stage III–IV periodontitis treated by mechanical therapy and adjunctive systemic antibiotics: A secondary analysis of a randomized controlled trial
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  88. New Insights into the Microbial Profiles of Infected Root Canals in Traumatized Teeth
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  89. Oral Microbiome in Dogs and Cats: Dysbiosis and the Utility of Antimicrobial Therapy in the Treatment of Periodontal Disease
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  90. Long-term efficacy of microbiology-driven periodontal laser-assisted therapy
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  94. Smoking-induced subgingival dysbiosis precedes clinical signs of periodontal disease
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  95. Synthesis of new carolacton derivatives and their activity against biofilms of oral bacteria
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  98. The prebiotic effect of CPP-ACP sugar-free chewing gum
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  99. Disrupted tongue microbiota and detection of nonindigenous bacteria on the day of allogeneic hematopoietic stem cell transplantation
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  100. LuxS quorum sensing system and biofilm formation of oral microflora: A short review article
    Abdurahman A. Niazy · 2020 · The Saudi Dental Journal