The human oral microbiome database: a web accessible resource for investigating oral microbe taxonomic and genomic information

Chen, T., Yu, W.-H., Izard, J., Baranova, O. V., Lakshmanan, A., Dewhirst, F. E.·2010·Database

DOI 10.1093/database/baq013

Cited by (999)

Items 201–300 of 999

Axenic Culture of a Candidate Division TM7 Bacterium from the Human Oral Cavity and Biofilm Interactions with Other Oral Bacteria
Valeria Soro, Lindsay C. Dutton, S. V. Sprague, Angela H. Nobbs, Anthony John Ireland, Jonathan R. Sandy, Mark A. Jepson, Massimo Micaroni, P. Splatt, David Dymock et al. · 2014 · Applied and Environmental Microbiology
Flexible and Accessible Workflows for Improved Proteogenomic Analysis Using the Galaxy Framework
Pratik Dilip Jagtap, James E. Johnson, Getiria Onsongo, Fredrik W. Sadler, Kevin J. Murray, Yuanbo Wang, Gloria M. Shenykman, Sricharan Bandhakavi, Lloyd M. Smith, Timothy J. Griffin · 2014 · Journal of Proteome Research
Oral microbiome shifts during pregnancy and adverse pregnancy outcomes: Hormonal and Immunologic changes at play
Changchang Ye, Yvonne Lorraine Kapila · 2021 · Periodontology 2000
Meta-omics uncover temporal regulation of pathways across oral microbiome genera during <i>in vitro</i> sugar metabolism
Edlund, Anna, Yang, Youngik, Yooseph, Shibu, Hall, Adam P, Nguyen, Don D, Dorrestein, Pieter C, Nelson, Karen E, He, Xuesong, Lux, Renate, Shi, Wenyuan et al. · 2015 · The ISME Journal
Exploring the salivary microbiome of children stratified by the oral hygiene index
Izumi Mashima, Citra Fragrantia Theodorea, Boonyanit Thaweboon, Sroisiri Thaweboon, Frank Andrew Scannapieco, Futoshi Nakazawa · 2017 · PLoS ONE
Application of metagenomics in understanding oral health and disease
Ping Xu, John C. Gunsolley · 2014 · Virulence
Oral microbial influences on oral mucositis during radiotherapy treatment of head and neck cancer
Anna Vesty, Kim Gear, Kristi Biswas, Brett Wagner Mackenzie, Michael W. Taylor, Richard George Douglas · 2019 · Supportive Care in Cancer
Human Microbiome and HIV/AIDS
Deepak B. Saxena, Yihong Li, Liying Yang, Zhiheng Pei, Michael A. Poles, William R. Abrams, Daniel Malamud · 2011 · Current HIV/AIDS Reports
Salivary microbiota in individuals with different levels of caries experience
Daniel Belstrøm, Palle Holmstrup, Nils‐Erik Fiehn, Nikolai Soren Kirkby, Alexis S. Kokaras, Bruce J. Paster, Allan Bardow · 2017 · Journal of Oral Microbiology
Common skin bacteria protect their host from oxidative stress through secreted antioxidant RoxP
Andersson, Tilde, Ertürk Bergdahl, Gizem, Saleh, Karim, Magnúsdóttir, Helga, Stødkilde, Kristian, Andersen, Christian Brix Folsted, Lundqvist, Katarina, Jensen, Anders, Brüggemann, Holger, Lood, Rolf · 2019 · Scientific Reports
Distinct composition of the oral indigenous microbiota in South Korean and Japanese adults
Toru Takeshita, Kazuki Matsuo, Michiko Furuta, Yukie Shibata, Kaoru Fukami, Yoshihiro Shimazaki, Sumio Akifusa, Dong-Hung Han, Hyun‐Duck Kim, Takeshi Yokoyama et al. · 2014 · Scientific Reports
Arginine Improves pH Homeostasis via Metabolism and Microbiome Modulation
Melissa Agnello, Lujia Cen, Nini Chaichanasakul Tran, Wenyuan Shi, Jeffrey S. McLean, Xuesong He · 2017 · Journal of Dental Research
Deciphering Endodontic Microbial Communities by Next-generation Sequencing
Jae Min Shin, Ting L. Luo, Kyu Han Lee, Diogo Guerreiro, Tatiana M. Botero, Neville J. McDonald, Alexander H. Rickard · 2018 · Journal of Endodontics
Gender-Specific Associations Between Saliva Microbiota and Body Size
Sajan C. Raju, S. Lagström, P. Ellonen, W. de Vos, J. Eriksson, E. Weiderpass, Trine B. Rounge · 2019 · Frontiers in Microbiology
Distinct interacting core taxa in co-occurrence networks enable discrimination of polymicrobial oral diseases with similar symptoms
Takahiko Shiba, Takayasu Watanabe, Hirokazu Kachi, Tatsuro Koyanagi, Noriko Maruyama, Kazunori Murase, Yasuo Takeuchi, Fumito Maruyama, Yuichi Izumi, Ichirô Nakagawa · 2016 · Scientific Reports
Shift of microbial composition of peri-implantitis-associated oral biofilm as revealed by 16S rRNA gene cloning
Ali Al‐Ahmad, Fariba Muzafferiy, Annette Carola Anderson, Johan Peter Woelber, Petra Ratka‐Krüger, Tobias Fretwurst, Katja Nelson, Kirstin Vach, Elmar Hellwig · 2018 · Journal of Medical Microbiology
Human variation in gingival inflammation
Shatha Bamashmous, Georgios A. Kotsakis, Kristopher A. Kerns, Brian G. Leroux, Camille Zenobia, Dandan Chen, Harsh M. Trivedi, Jeffrey S. McLean, Richard P. Darveau · 2021 · Proceedings of the National Academy of Sciences
Profiling of Oral Bacterial Communities
William G. Wade, Erica M. Prosdocimi · 2020 · Journal of Dental Research
Microbial Diversity Similarities in Periodontal Pockets and Atheromatous Plaques of Cardiovascular Disease Patients
Wagner Leal Serra e Silva Filho, Renato Côrrea Viana Casarin, Eduardo Nicolela, Humberto M. Passos, Antônio Wilson Sallum, Reginaldo Bruno Gonçalves · 2014 · PLoS ONE
Ecological Therapeutic Opportunities for Oral Diseases
Anilei Hoare, Philip David Marsh, Patricia I. Diaz · 2017 · Microbiology Spectrum
Predation of oral pathogens by Bdellovibrio bacteriovorus 109J
Aliza Dashiff, Daniel E. Kadouri · 2010 · Molecular Oral Microbiology
Oral Microbiota: Microbial Biomarkers of Metabolic Syndrome Independent of Host Genetic Factors
Jiyeon Si, Cheonghoon Lee, GwangPyo Ko · 2017 · Frontiers in Cellular and Infection Microbiology
Oral microbiota shift after 12-week supplementation with Lactobacillus reuteri DSM 17938 and PTA 5289; a randomized control trial
Romani Vestman, Nelly, Chen, Tsute, Lif Holgerson, Pernilla, Öhman, Carina, Johansson, Ingegerd · 2015 · PLoS ONE
Metaproteomic analysis using the Galaxy framework
Pratik Dilip Jagtap, Alan Blakely, Kevin J. Murray, Shaun Stewart, Joel A. Kooren, James E. Johnson, Nelson L. Rhodus, Joel D. Rudney, Timothy J. Griffin · 2015 · PROTEOMICS
Metaproteomics of saliva identifies human protein markers specific for individuals with periodontitis and dental caries compared to orally healthy controls
Belstrøm, Daniel, Jersie-Christensen, Rosa R., Lyon, David, Damgaard, Christian, Jensen, Lars J., Holmstrup, Palle, Olsen, Jesper V. · 2016 · PeerJ
Compositional and Functional Analysis of the Microbiome in Tissue and Saliva of Oral Squamous Cell Carcinoma
Zhen Zhang, Junjie Yang, Qiang Feng, Bin Chen, Meihui Li, Cheng Liang, Mingyu Kenneth Li, Zhihui Li, Qin Xu, Lei Zhang et al. · 2019 · Frontiers in Microbiology
Isolation and cultivation of candidate phyla radiation Saccharibacteria (TM7) bacteria in coculture with bacterial hosts
Pallavi P. Murugkar, Andrew J. Collins, Tsute Chen, Floyd E. Dewhirst · 2020 · Journal of Oral Microbiology
Over 50,000 Metagenomically Assembled Draft Genomes for the Human Oral Microbiome Reveal New Taxa
Jie Zhu, Liu Tian, Peishan Chen, Mo Han, Liju Song, Xin Tong, Xiaohuan Sun, Fangming Yang, Zhipeng Lin, Xing Liu et al. · 2021 · Genomics Proteomics & Bioinformatics
Identification of the Microbiota in Carious Dentin Lesions Using 16S rRNA Gene Sequencing
Junko Obata, Toru Takeshita, Yukie Shibata, Wataru Yamanaka, Masako Unemori, Akifumi Akamine, Yoshihisa Yamashita · 2014 · PLoS ONE
Parallel-META 2.0: Enhanced Metagenomic Data Analysis with Functional Annotation, High Performance Computing and Advanced Visualization
Xiaoquan Su, Weihua Pan, Baoxing Song, Jian Xu, Kang Ning · 2014 · PLoS ONE
Relationships of variations in the tongue microbiota and pneumonia mortality in nursing home residents.
Kageyama, Shinya, Takeshita, Toru, Furuta, Michiko, Tomioka, Mikiko, Asakawa, Mikari, Suma, Shino, Takeuchi, Kenji, Shibata, Yukie, Iwasa, Yasuyuki, Yamashita, Yoshihisa · 2018 · The Journals of Gerontology Series A
Contribution of phage‐derived genomic islands to the virulence of facultative bacterial pathogens
Ben Busby, David M. Kristensen, Eugene V. Koonin · 2012 · Environmental Microbiology
Oral microbial community composition is associated with pancreatic cancer: A case‐control study in Iran
Emily Vogtmann, Yongli Han, J. Gregory Caporaso, Nicholas A. Bokulich, Ashraf Mohamadkhani, Alireza Moayyedkazemi, Xing Hua, Farin Kamangar, Yunhu Wan, Shalabh Suman et al. · 2019 · Cancer Medicine
Bacterial diversity and functional analysis of severe early childhood caries and recurrence in India
B. Kalpana, Puniethaa Prabhu, A. Bhat, A. Senthilkumar, R. Arun, S. Asokan, S. S. Gunthe, R. Verma · 2020 · Scientific Reports
Influence of DNA extraction on oral microbial profiles obtained via 16S rRNA gene sequencing
Loreto Abusleme, Bo‐Young Hong, Amanda K. Dupuy, Linda D. Strausbaugh, Patricia I. Diaz · 2014 · Journal of Oral Microbiology
Levels of Selenomonas species in generalized aggressive periodontitis
L. F. H. Gonçalves, Daiane Fermiano, Magda Feres, Luciene Cristina Figueiredo, Fonseca Teles, Márcia Pinto Alves Mayer, Marcelo Faveri · 2012 · Journal of Periodontal Research
Analysis of the salivary microbiome using culture-independent techniques
Vladimir Lazarević, Katrine Whiteson, Nadia Gaïa, Yann Gizard, David Hernández, Laurent Farinelli, Magne Østerås, Patrice François, Jacques Schrenzel · 2012 · Journal of Clinical Bioinformatics
Subgingival microbiome and clinical periodontal status in an elderly cohort: The WHICAP ancillary study of oral health
P. Papapanou, Heekuk Park, B. Cheng, A. Kokaras, B. Paster, Sandra Burkett, C. Watson, M. Annavajhala, A. Uhlemann, J. Noble · 2020 · The Journal of Periodontology
Tongue Coating and the Salivary Microbial Communities Vary in Children with Halitosis
Wen Ren, Zhe Xun, Zicheng Wang, Qun Zhang, Xuenan Liu, Hui Zheng, Qian Zhang, Yifei Zhang, Linshuang Zhang, Chunyan Wu et al. · 2016 · Scientific Reports
Veillonella Catalase Protects the Growth of Fusobacterium nucleatum in Microaerophilic and Streptococcus gordonii-Resident Environments
Peng Zhou, Xiaoli Li, I‐Hsiu Huang, Fengxia Qi · 2017 · Applied and Environmental Microbiology
Human defects in STAT3 promote oral mucosal fungal and bacterial dysbiosis
Loreto Abusleme, Patricia I. Diaz, Alexandra F. Freeman, Teresa Greenwell‐Wild, Laurie Brenchley, Jigar V. Desai, Weng-Ian Ng, Steven M. Holland, Michail S. Lionakis, Julia A. Segre et al. · 2018 · JCI Insight
Microbial changes in relation to oral mucositis in autologous hematopoietic stem cell transplantation recipients
Alexa M. G. A. Laheij, Judith E. Raber‐Durlacher, Renée G. A. Koppelmans, M.C.D.N.J.M. Huysmans, Carin M. J. Potting, Stephanie J. M. van Leeuwen, Mette D. Hazenberg, Michael Thomas Brennan, Inger v. Bültzingslöwen, Jan‐Erik Johansson et al. · 2019 · Scientific Reports
Relationship between dental and periodontal health status and the salivary microbiome: bacterial diversity, co-occurrence networks and predictive models
Marta Relvas, Alba Regueira‐Iglesias, Carlos Balsa‐Castro, Filomena Salazar, José Júlio Pacheco, Cristina Trigo Cabral, Corsina Velazco de Henriques, Inmaculada Tomás · 2021 · Scientific Reports
Natural products from reconstructed bacterial genomes of the Middle and Upper Paleolithic
Martin Klapper, Alexander Hübner, Anan Ibrahim, Ina Wasmuth, Maxime Borry, Veit G. Haensch, Shuai‐Bing Zhang, Walid K. Al‐Jammal, Harikumar R Suma, James A. Fellows Yates et al. · 2023 · Science
Salivary microbiome with gastroesophageal reflux disease and treatment
Nadia I. Kawar, Seon Gyeong Park, JOEL L. SCHWARTZ, Nicholas F. Callahan, Aleš Obrez, Bin Juan Yang, Zhengjia Chen, Guy R. Adami · 2021 · Scientific Reports
Maturation of the Oral Microbiome in Caries-Free Toddlers: A Longitudinal Study
Dono Kahharova, Bernd Willem Brandt, Mark J. Buijs, Mathilde C. Peters, Richard D. Jackson, George Joseph Eckert, Barry P. Katz, Martha Ann Keels, Steven Marc Levy, Margherita Fontana et al. · 2019 · Journal of Dental Research
Multi-omics Analysis of Periodontal Pocket Microbial Communities Pre- and Posttreatment
Califf, Katy J., Schwarzberg-Lipson, Karen, Garg, Neha, Gibbons, Sean M., Caporaso, J. Gregory, Slots, Jørgen, Cohen, Chloe, Dorrestein, Pieter C., Kelley, Scott T. · 2017 · mSystems
The Oral Microbiome Bank of China
Peng Xian, Xuedong Zhou, Xin Xu, Li Yuqing, Yan Li, Jiyao Li, Xiaoquan Su, Shi Huang, Jian Xu, Ga Liao · 2018 · International Journal of Oral Science
Distribution of Mixotrophy and Desiccation Survival Mechanisms across Microbial Genomes in an Arid Biological Soil Crust Community
Dimitri V. Meier, Stefanie Imminger, Osnat Gillor, Dagmar Woebken · 2021 · mSystems
Oral Dysbiosis in Severe Forms of Periodontitis Is Associated With Gut Dysbiosis and Correlated With Salivary Inflammatory Mediators: A Preliminary Study
Dione Kawamoto, Rodrigo Borges, Rodolfo A. Ribeiro, Robson Franciso de Souza, Pâmela Pontes Penas Amado, Luciana Moreira Saraiva, Ana Carolina Ratto Tempestini Horliana, Marcelo Faveri, Márcia Pinto Alves Mayer · 2021 · Frontiers in Oral Health
On the Oral Microbiome of Oral Potentially Malignant and Malignant Disorders: Dysbiosis, Loss of Diversity, and Pathogens Enrichment
Alejandro Herreros‐Pomares, David Hervás, Leticia Bagán, Eloisa Jantus Lewintre, Concepción Gimeno-Cardona, José Vicente Bagán Sebastián · 2023 · International Journal of Molecular Sciences
Oral microbiota and oral squamous cell carcinoma: a review of their relation and carcinogenic mechanisms
Bayu Indra Sukmana, Raed Obaid Saleh, Maryam Abdulrahman Najim, Hasan S. AL-Ghamdi, Harun Achmad, Mais Mazin Al‐Hamdani, Abbas A. Y. Taher, Ali Alsalamy, Mansoor Khaledi, Kasra Javadi · 2024 · Frontiers in Oncology
The Family Peptostreptococcaceae
A. I. Slobodkin · 2014 · Springer eBooks
Inter-Individual Differences in the Oral Bacteriome Are Greater than Intra-Day Fluctuations in Individuals
Yukuto Sato, Junya Yamagishi, Riu Yamashita, Natsuko O. Shinozaki, Bin Ye, Takuji Yamada, Masayuki P. Yamamoto, Masao Nagasaki, Akito Tsuboi · 2015 · PLoS ONE
Comparison of bacterial culture and 16S rRNA community profiling by clonal analysis and pyrosequencing for the characterization of the dentine caries-associated microbiome
Kathrin Schulze-Schweifing, Avijit Banerjee, William G. Wade · 2014 · Frontiers in Cellular and Infection Microbiology
Oral Microbiota in Infants Fed a Formula Supplemented with Bovine Milk Fat Globule Membranes - A Randomized Controlled Trial
Niklas Timby, Magnus Domellöf, Pernilla Lif Holgerson, Christina E. West, Bo L Lönnerdal, Olle Hernell, Ingegerd Johansson · 2017 · PLoS ONE
Studying the human oral microbiome: challenges and the evolution of solutions
Angela M. L. Benn, Nicholas C. K. Heng, Jonathan Mark Broadbent, W. Murray Thomson · 2017 · Australian Dental Journal
Diversity of macaque microbiota compared to the human counterparts
Zigui Chen, Yun Kit Yeoh, Mamie Hui, Po Yee Wong, Martin C.W. Chan, Margaret Ip, Jun Yu, Robert D. Burk, Francis K.L. Chan, Paul K.S. Chan · 2018 · Scientific Reports
The Subgingival Microbiome Relationship to Periodontal Disease in Older Women
Robert J. Genco, Michael J. LaMonte, Daniel Ian McSkimming, Michael Joseph Buck, L. Li, Kathleen M. O'Reilly Hovey, Chris Andrews, Yijun Sun, Maria Tsompana, W. Zheng et al. · 2019 · Journal of Dental Research
Comparison of oral microbiome profiles in stimulated and unstimulated saliva, tongue, and mouth-rinsed water
Ryutaro Jo, Yuichiro Nishimoto, Kouta Umezawa, Kazuma Yama, Yuto Aita, Yuko Ichiba, Shinnosuke Murakami, Yasushi Kakizawa, Takashi Kumagai, Takuji Yamada et al. · 2019 · Scientific Reports
Identification of Potential Oral Microbial Biomarkers for the Diagnosis of Periodontitis
Hee Sam Na, Si Yeong Kim, Hyejung Han, Hyun‐Joo Kim, Ju Youn Lee, Jae‐Hyung Lee, Jin Chung · 2020 · Journal of Clinical Medicine
Identifying Neisseria Species by Use of the 50S Ribosomal Protein L6 ( rplF ) Gene
Julia S. Bennett, Eleanor Watkins, Keith A. Jolley, Odile Barbara Harrison, Martin C. J. Maiden · 2014 · Journal of Clinical Microbiology
The Human Salivary RNA Transcriptome Revealed by Massively Parallel Sequencing
Nadine Spielmann, Diane D. Ilsley, Jian Hong Gu, Kristi Lea, Joel P. Brockman, Sheila J. Heater, Robert A. Setterquist, David T. Wong · 2012 · Clinical Chemistry
Subgingival microbiome of rheumatoid arthritis patients in relation to their disease status and periodontal health
Kathrin Beyer, Egija Zaura, Bernd Willem Brandt, Mark J. Buijs, Johan Gorgas Brun, Wim Crielaard, Anne Isine Bolstad · 2018 · PLoS ONE
Oral Microbiota Profile Associates with Sugar Intake and Taste Preference Genes
Anders Esberg, Simon J. Haworth, Pamela Hasslöf, Pernilla Lif Holgerson, Ingegerd Johansson · 2020 · Nutrients
Discriminating Microbial Community Structure Between Peri-Implantitis and Periodontitis With Integrated Metagenomic, Metatranscriptomic, and Network Analysis
Keiji Komatsu, Takahiko Shiba, Yasuo Takeuchi, Takayasu Watanabe, Tatsuro Koyanagi, Takashi Nemoto, Masahiro Shimogishi, Masaki Shibasaki, Sayaka Katagiri, Shohei Kasugai et al. · 2020 · Frontiers in Cellular and Infection Microbiology
Remineralisation by Chewing Sugar-Free Gums in a Randomised, Controlled in situ Trial Including Dietary Intake and Gauze to Promote Plaque Formation
Nathan J. Cochrane, Peiyan Shen, Samantha J. Byrne, Glenn D. Walker, Geoffrey Grant Adams, Yue Yuan, Coralie Reynolds, Brigitte Hoffmann, Stuart G. Dashper, Eric Charles Reynolds · 2012 · Caries Research
Dental plaque development on a hydroxyapatite disk in young adults observed by using a barcoded pyrosequencing approach
Toru Takeshita, Masaki Yasui, Yukie Shibata, Michiko Furuta, Yoji Saeki, Nobuoki Eshima, Yoshihisa Yamashita · 2015 · Scientific Reports
Comparison of Boiling and Robotics Automation Method in DNA Extraction for Metagenomic Sequencing of Human Oral Microbes
Junya Yamagishi, Yukuto Sato, Natsuko O. Shinozaki, Bin Ye, Akito Tsuboi, Masao Nagasaki, Riu Yamashita · 2016 · PLoS ONE
High-Resolution Detection of Translocation of Oral Bacteria to the Gut
Shinya Kageyama, Satoko Sakata, Jiale Ma, Mikari Asakawa, Toru Takeshita, Michiko Furuta, Toshiharu Ninomiya, Yoshihisa Yamashita · 2023 · Journal of Dental Research
Probing the diversity of healthy oral microbiome with bioinformatics approaches
Ji-Hoi Moon, Jae‐Hyung Lee · 2016 · BMB Reports
Microbial Complexes and Caries in 17-Year-Olds with and without Streptococcus mutans
Linda Eriksson, Pernilla Lif Holgerson, Anders Esberg, Ingegerd Johansson · 2017 · Journal of Dental Research
Isolation and identification of the oral bacteria and their characterization for bacteriocin production in the oral cavity
Saad Ali Alghamdi · 2021 · Saudi Journal of Biological Sciences
Second Era of OMICS in Caries Research: Moving Past the Phase of Disillusionment
Marcelle Matos Nascimento, Egija Zaura, Álex Mira, Nobuhiro Takahashi, Jacob M. ten Cate · 2017 · Journal of Dental Research
Multi-omic detection of Mycobacterium leprae in archaeological human dental calculus
Anna K. Fotakis, Sean Dexter Denham, Meaghan Mackie, Miren Iraeta-Orbegozo, Dorothea Mylopotamitaki, Shyam Gopalakrishnan, Thomas Sicheritz‐Pontén, Jesper Velgaard Olsen, Enrico Cappellini, Guojie Zhang et al. · 2020 · Philosophical Transactions of the Royal Society B Biological Sciences
A new framework for approaching precision bioremediation of PAH contaminated soils
Lauren K. Redfern, Courtney M. Gardner, Emina Hodzic, P. Lee Ferguson, Heileen Hsu‐Kim, Claudia K. Gunsch · 2019 · Journal of Hazardous Materials
Maternal oral origin of Fusobacterium nucleatum in adverse pregnancy outcomes as determined using the 16S–23S rRNA gene intergenic transcribed spacer region
Cecilia Gonzales‐Marin, David A. Spratt, Robert Patrick Allaker · 2012 · Journal of Medical Microbiology
Nitrate‐rich diet alters the composition of the oral microbiota in periodontal recall patients
Yvonne Jockel‐Schneider, Ulrich Schlagenhauf, Peggy Stölzel, Sophia K. Goßner, Reinhold Carle, Benjamin Ehmke, Karola Prior, Daniel Hagenfeld · 2021 · Journal of Periodontology
Tumour Necrosis Factor Alpha (TNF-α) and Oral Squamous Cell Carcinoma
Gary Ian Brierly, Antonio Celentano, Omar Breik, Elham Moslemivayeghan, Romeo Patini, Michael John McCullough, Tami Yap · 2023 · Cancers
Identifying Low pH Active and Lactate-Utilizing Taxa within Oral Microbiome Communities from Healthy Children Using Stable Isotope Probing Techniques
Jeffrey S. McLean, Sarah J Fansler, Paul D. Majors, Kathleen McAteer, Lisa Zeigler Allen, Mark E. Shirtliff, Renate Lux, Wenyuan Shi · 2012 · PLoS ONE
Salivary Mucin 19 Glycoproteins
David J. Culp, Bently Robinson, Melanie N. Cash, Indraneel Bhattacharyya, Carol Stewart, Giancarlo Cuadra-Saenz · 2014 · Journal of Biological Chemistry
The apical root canal system microbial communities determined by next-generation sequencing
Luciana Carla Neves de Brito, Janet Doolittle‐Hall, Chun-Teh Lee, KEVIN L. MOSS, Wilson Bambirra Júnior, Warley Luciano Fonseca Tavares, Antônio Paulino Ribeiro Sobrinho, Flavia Teles · 2020 · Scientific Reports
Gastric Microbiota in a Low–Helicobacter pylori Prevalence General Population and Their Associations With Gastric Lesions
Nelson Ndegwa, Alexander Ploner, Anders F. Andersson, Ulrika Zagai, Anna Andréasson, Michael W. Vieth, Nicholas Joseph Talley, Lars Agréus, Weimin Ye · 2020 · Clinical and Translational Gastroenterology
A Critical Role for Extracellular DNA in Dental Plaque Formation
Rostami, N., Shields, R.C., Yassin, S.A., Hawkins, A.R., Bowen, L., Luo, T.L., Rickard, A.H., Holliday, R., Preshaw, P.M., Jakubovics, N.S. · 2017 · Journal of Dental Research
Expanding the Foundation for Personalized Medicine
Isabel García, Robert Kuska, Martha Joan Somerman · 2013 · Journal of Dental Research
molBV reveals immune landscape of bacterial vaginosis and predicts human papillomavirus infection natural history
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A Quorum-Sensing System That Regulates Streptococcus pneumoniae Biofilm Formation and Surface Polysaccharide Production
Roger Junges, Gabriela Salvadori, Sudhanshu Shekhar, Heidi Aarø Åmdal, Jimstan N. Periselneris, Tsute Chen, Jeremy Brown, Fernanda C. Petersen · 2017 · mSphere
The Oral Microbiome and Inflammation in Mild Cognitive Impairment
Yang, Irene, Arthur, Robert Adam, Zhao, Liping, Clark, Jasmine, Hu, Yijuan, Corwin, Elizabeth J., Lah, James · 2021 · Experimental Gerontology
The salivary microbiome shows a high prevalence of core bacterial members yet variability across human populations
Xinwei Ruan, Jiaqiang Luo, Pangzhen Zhang, Kate S. Howell · 2022 · npj Biofilms and Microbiomes
A streptococcal effector protein that inhibits Porphyromonas gingivalis biofilm development
Aaron B. Christopher, Annette Arndt, Carla Cugini, Mary Ellen Davey · 2010 · Microbiology
Epithelial-derived interleukin-23 promotes oral mucosal immunopathology
Tae Sung Kim, Tomoko Ikeuchi, Vasileios Ionas Theofilou, Drake Winslow Williams, Teresa Greenwell‐Wild, Armond June, Emmanuel E. Adade, Lu Li, Loreto Abusleme, Nicolás Dutzan et al. · 2024 · Immunity
Microcosm biofilms cultured from different oral niches in periodontitis patients
Fabian Cieplik, Egija Zaura, Bernd Willem Brandt, Mark J. Buijs, Wolfgang Buchalla, Wim Crielaard A, Marja L. Laine, Dongmei Deng, Rob A. M. Exterkate · 2018 · Journal of Oral Microbiology
Evaluation of Oral Cavity DNA Extraction Methods on Bacterial and Fungal Microbiota
Jennifer Rosenbaum, Mykhaylo Usyk, Zigui Chen, Christine P. Zolnik, Heidi E. Jones, Levi Waldron, Jennifer B. Dowd, Lorna E. Thorpe, Robert D. Burk · 2019 · Scientific Reports
High-resolution ISR amplicon sequencing reveals personalized oral microbiome
Chiranjit Mukherjee, Clifford J. Beall, Ann L. Griffen, Eugene J. Leys · 2018 · Microbiome
Pyrosequencing of supra- and subgingival biofilms from inflamed peri-implant and periodontal sites
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Microbial Communities in the Extraradicular and Intraradicular Infections Associated With Persistent Apical Periodontitis
Xiaoqiang Sun, Zi Yang, Yong Nie, Benxiang Hou · 2022 · Frontiers in Cellular and Infection Microbiology
In-Depth Metaproteomics Analysis of Oral Microbiome for Lung Cancer
Xiaoteng Jiang, Yan Zhang, Huiyu Wang, Zeyuan Wang, Shen Hu, Chengxi Cao, Hua Xiao · 2022 · Research
Molecular Analysis of 16S rRNA Genes Identifies Potentially Periodontal Pathogenic Bacteria and Archaea in the Plaque of Partially Erupted Third Molars
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PhyloToAST: Bioinformatics tools for species-level analysis and visualization of complex microbial datasets
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Human diseases, immunity and the oral microbiota—Insights gained from metagenomic studies
Adi Idris, Sumaira Zia Hasnain, Lu Z. Huat, David Soo Quee Koh · 2016 · Oral Science International