Dihydropteroate synthase polymorphisms in Pneumocystis carinii.
Abstract
Sulfa drugs are widely used in the treatment and prophylaxis of Pneumocystis carinii pneumonia. The nucleotide sequences of the sulfa target enzyme, dihydropteroate synthase (DHPS), differed substantially in human-, rat-, and mouse-derived P. carinii. Sequence variation also existed in the DHPSs from human-derived isolates. Six nucleotide changes were found in 6 human isolates; each was nonsynonymous and resulted in an amino acid change. Several of these changes were in highly conserved regions and are similar to those that cause sulfa resistance in other organisms. These data suggest that the human-derived P. carinii DHPS may be evolving under positive selective pressure from sulfa drugs.
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DHPS gene mutations have not been found in other mammalian Pneumocystis species that have not been exposed to sulfa medications.
“Furthermore, DHPS gene mutations have not been found in other mammalian Pneumocystis species that have not been exposed to sulfa medications (18,27).”
From Dihydropteroate Synthase Gene Mutations in<i>Pneumocystis</i>and Sulfa Resistance (2004) · cites this paper as [18]
The Results (page not specified) report DHPS sequence changes in rodent-derived Pneumocystis: 17 of 45 nucleotide changes resulted in 16 amino-acid changes. The paper finds a higher proportion of amino-acid-changing substitutions in human-derived isolates, but it does not say that DHPS mutations are absent from other mammalian hosts. (LLM, conf=0.84)
Checked by a reasoning model — may be wrong.
Experimental — accuracy not yet measuredThe region of the DHPS gene in which mutations have been identified is highly conserved among other organisms, including Plasmodium falciparum, Streptococcus pneumoniae, E. coli, and Bacillus subtilis.
“The region of the DHPS gene in which mutations have been identified is one that is highly conserved among other organisms, including Plasmodium falciparum, Streptococcus pneumoniae, E. coli, and Bacillus subtilis (18).”
From Dihydropteroate Synthase Gene Mutations in<i>Pneumocystis</i>and Sulfa Resistance (2004) · cites this paper as [18]
Sulfa medications appear to exert selective pressure on Pneumocystis, as the DHPS gene is more likely to display mutations in highly conserved regions in patients with PCP who have previously been exposed to sulfa medications.
“Sulfa medications appear to exert selective pressure on Pneumocystis (18), as the DHPS gene is more likely to display mutations in highly conserved regions in patients with PCP who have previously been exposed to sulfa medications (19–25).”
From Dihydropteroate Synthase Gene Mutations in<i>Pneumocystis</i>and Sulfa Resistance (2004) · cites this paper as [18]
Other mutations near this site also cause sulfa resistance in S. pneumoniae and P. falciparum.
“Other mutations near this site also cause sulfa resistance in S. pneumoniae and P. falciparum (18).”
From Dihydropteroate Synthase Gene Mutations in<i>Pneumocystis</i>and Sulfa Resistance (2004) · cites this paper as [18]
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Cites
Fundamentals of molecular evolution
(1991) · Journal of Human Evolution · doi:10.1016/0047-2484(91)90069-8 · Cited by 1,669 · see citing works
Fundamentals of molecular evolution
Mindell, D. P. (1991) · Trends in Ecology & Evolution · doi:10.1016/0169-5347(91)90046-z · Cited by 406 · see citing works
Self-citationBrooks, D. R., Wang, P., Read, M., Watkins, W. M., Sims, P. F. G., & Hyde, J. E. (1994) · European Journal of Biochemistry · doi:10.1111/j.1432-1033.1994.00397.x · Cited by 369 · see citing works
Genetic Variation among Pneumocystis carinii hominis Isolates in Recurrent Pneumocystosis
Keely, S. P., Stringer, J. R., Baughman, R. P., Linke, M. J., Walzer, P. D., & Smulian, A. G. (1995) · The Journal of Infectious Diseases · doi:10.1093/infdis/172.2.595 · Cited by 183 · see citing works
López, P., Espinosa, M., Greenberg, B., & Lacks, S. A. (1987) · Journal of Bacteriology · doi:10.1128/jb.169.9.4320-4326.1987 · Cited by 132 · see citing works
Lu, J., Bartlett, M. S., Shaw, M., et al. (1994) · Journal of Clinical Microbiology · doi:10.1128/jcm.32.12.2904-2912.1994 · Cited by 125 · see citing works
Self-citationDallas, W. S., Gowen, J. E., Ray, P. H., Cox, M. J., & Dev, I. K. (1992) · Journal of Bacteriology · doi:10.1128/jb.174.18.5961-5970.1992 · Cited by 111 · see citing works
Fermér, C., Kristiansen, B., Sköld, O., & Swedberg, G. (1995) · Journal of Bacteriology · doi:10.1128/jb.177.16.4669-4675.1995 · Cited by 94 · see citing works
Volpe, F., Dyer, M., Scaife, J. G., Darby, G., Stammers, D. K., & Delves, C. J. (1992) · Gene · doi:10.1016/0378-1119(92)90378-3 · Cited by 68 · see citing works
Walzer, P. D., Foy, J., Steele, P., Kim, C. K., White, M., Klein, R. S., Otter, B. A., & Allegra, C. (1992) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.36.9.1935 · Cited by 67 · see citing works
Schluger, N. W., Godwin, T. A., Sepkowitz, K. A., Armstrong, D., Bernard, E. M., Rifkin, M., Cerami, A., & Bucala, R. (1992) · The Journal of Experimental Medicine · doi:10.1084/jem.176.5.1327 · Cited by 64 · see citing works
Polymorphism of the Thymidylate Synthase Gene of Pneumocystis carinii from Different Host Species
Mazars, E., Ödberg-Ferragut, C., Dei‐Cas, E., et al. (1995) · Journal of Eukaryotic Microbiology · doi:10.1111/j.1550-7408.1995.tb01536.x · Cited by 64 · see citing works
Preventing Pneumocystis carinii Pneumonia in Persons Infected with Human Immunodeficiency Virus
Simonds, R. J., Hughes, W. T., Feinberg, J., & Navin, T. R. (1995) · Clinical Infectious Diseases · doi:10.1093/clinids/21.supplement_1.s44 · Cited by 47 · see citing works
Amplification of Pneumocystis carinii DNA on specimens scraped from slides
Lee, C., Wang, J., Durkin, M., Brady, S. L., Bartlett, M. S., & Smith, J. W. (1994) · Diagnostic Microbiology and Infectious Disease · doi:10.1016/0732-8893(94)90091-4 · Cited by 11 · see citing works
Self-citation
Flagged first, then by citations
Research works printed but not linked: 1
- Pneumocystis Workshop. Revised nomenclature for Pneumocystis carinii. J Eukaryot Microbioll994;41:12IS-2S.
Cited by
Sorted by citations
Helweg-Larsen, J., Benfield, T. L., Eugen-Olsen, J., Lundgren, J. D., & Lundgren, B. (1999) · The Lancet · doi:10.1016/s0140-6736(99)03320-6 · Cited by 274 · see citing works
Beard, C. B., Carter, J. L., Keely, S. P., Huang, L., Pieniazek, N. J., Moura, I. N. S., Roberts, J. M., Hightower, A. W., Bens, M. S., Freeman, A. R., et al. (2000) · Emerging infectious diseases · doi:10.3201/eid0603.000306 · Cited by 241 · see citing works
Cooley, L., Dendle, C., Wolf, J., Teh, B. W., Chen, S. C., Boutlis, C., & Thursky, K. A. (2014) · Internal Medicine Journal · doi:10.1111/imj.12599 · Cited by 228 · see citing works
HIV-Associated <i>Pneumocystis</i> Pneumonia
Huang, L., Cattamanchi, A., Davis, J. L., Boon, S. D., Kovacs, J., Meshnick, S., Miller, R. F., Walzer, P. D., Worodria, W., & Masur, H. (2011) · Proceedings of the American Thoracic Society · doi:10.1513/pats.201009-062wr · Cited by 191 · see citing works
Self-citationKazanjian, P., Locke, A. B., Hossler, P. A., Lane, B. R., Bartlett, M. S., Smith, J. W., Cannon, M., & Meshnick, S. R. (1998) · AIDS · doi:10.1097/00002030-199808000-00009 · Cited by 171 · see citing works
Self-citationMa, L., Borio, L., Masur, H., & Kovacs, J. A. (1999) · The Journal of Infectious Diseases · doi:10.1086/315148 · Cited by 169 · see citing works
Kazanjian, P., Armstrong, W., Hossler, P. A., Burman, W., Richardson, J., Lee, C., Crane, L., Katz, J., & Meshnick, S. R. (2000) · The Journal of Infectious Diseases · doi:10.1086/315719 · Cited by 164 · see citing works
Self-citationHuang, L., Beard, C. B., Creasman, J., Levy, D., Duchin, J. S., Lee, S., Pieniazek, N., Carter, J. L., del Rio, C., Rimland, D., et al. (2000) · The Journal of Infectious Diseases · doi:10.1086/315824 · Cited by 149 · see citing works
Dihydropteroate Synthase Gene Mutations in<i>Pneumocystis</i>and Sulfa Resistance
Huang, L., Crothers, K., Atzori, C., Benfield, T., Miller, R., Rabodonirina, M., & Helweg-Larsen, J. (2004) · Emerging Infectious Diseases · doi:10.3201/eid1010.030994 · Cited by 131 · see citing works
“Sulfa medications appear to exert selective pressure on Pneumocystis (18), as the DHPS gene is more likely to display mutations in highly conserved regions in patients with PCP who have previously been exposed to sulfa medications (19–25).”
BackgroundNavin, T. R., Beard, C. B., Huang, L., del Rio, C., Lee, S., Pieniazek, N. J., Carter, J. L., Le, T., Hightower, A., & Rimland, D. (2001) · The Lancet · doi:10.1016/s0140-6736(01)05705-1 · Cited by 117 · see citing works
Nahimana, A., Rabodonirina, M., Zanetti, G., Meneau, I., Francioli, P., Bille, J., & Hauser, P. M. (2003) · The Journal of Infectious Diseases · doi:10.1086/378239 · Cited by 71 · see citing works
Ma, L., Kovacs, J. A., Cargnel, A., Valerio, A., Fantoni, G., & Atzori, C. (2002) · The Journal of Infectious Diseases · doi:10.1086/340220 · Cited by 61 · see citing works
Visconti, E., Ortona, E., Mencarini, P., Margutti, P., Marinaci, S., Zolfo, M., Siracusano, A., & Tamburrini, E. (2001) · International Journal of Antimicrobial Agents · doi:10.1016/s0924-8579(01)00460-5 · Cited by 50 · see citing works
Ma, L., & Kovacs, J. A. (2001) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.45.11.3213-3215.2001 · Cited by 34 · see citing works
Dihydrofolate reductase gene polymorphisms in Pneumocystis carinii f. sp. hominis in Japan.
TAKAHASHI, T., ENDO, T., NAKAMURA, T., SAKASHITA, H., KIMURA, K., OHNISHI, K., KITAMURA, Y., & IWAMOTO, A. (2002) · Journal of Medical Microbiology · doi:10.1099/0022-1317-51-6-510 · Cited by 31 · see citing works
Demanche, C., Guillot, J., Berthelemy, M., Petit, T., Roux, P., & Wakefield, A. E. (2002) · Medical Mycology · doi:10.1080/714031111 · Cited by 13 · see citing works
HUANG, L., FRIEDLY, J., MORRIS, A. M., CARTER, J. L., TURNER, J. R., MERRIFIELD, C., NAVIN, T. R., & BEARD, C. B. (2001) · Journal of Eukaryotic Microbiology · doi:10.1111/j.1550-7408.2001.tb00487.x · Cited by 9 · see citing works
- Authors
- Lane, B. R., Ast, J. C., Hossler, P. A., Mindell, D. P., Bartlett, M. S., Smith, J. W., & Meshnick, S. R.
- Affiliations
- University of Michigan (US)
- Corresponding author
- Meshnick, S. R.
- Venue
- Journal of Infectious Diseases
- Publisher
- Oxford University Press (OUP)
- Published
- 1997-02-01
- Volume
- 175
- Issue
- 2
- Pages
- 482-485
- ISSN
- 0022-1899 (ISSN-L)
- 1537-6613
- OpenAlex
- W1999275308
- Cited by
- 176
- References
- 14
- Citations by year
- 2026: 1 · 2024: 1 · 2023: 4 · 2022: 3 · 2021: 5 · 2019: 4 · 2018: 4 · 2017: 4 · 2016: 3 · 2015: 7 · 2014: 6 · 2013: 4 · 2012: 5
- FWCI
- 9.99
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- The Journal of Infectious Diseases (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Institutes of Health (5r01ai031775-05)
- National Institute of Allergy and Infectious Diseases (AI-31775, AI-72647)
- Topics
- Health Sciences › Medicine › Epidemiology › Pneumocystis jirovecii pneumonia detection and treatment
- Health Sciences › Medicine › Epidemiology › Pneumonia and Respiratory Infections
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Medicine › Antibiotic Resistance in Bacteria
- Keywords
- Pneumocystis carinii, dihydropteroate synthase, sulfonamides, Pneumocystis carinii pneumonia, nucleotide variation, non-synonymous mutations, positive selection
- MeSH terms
- Amino Acid Sequence, Animals, Dihydropteroate Synthase, DNA, Fungal, Humans, Molecular Sequence Data, Pneumocystis, Polymorphism, Genetic, Genetic Variation, Polymerase Chain Reaction, Sequence Alignment, Pneumocystis Infections, Sequence Homology, Amino Acid, Sequence Analysis, DNA, Mice, Rats
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