The DOI matches its Crossref record; 2 of the 2 references it cites were found in a registry or an index.
SMART: a web-based tool for the study of genetically mobile domains
Open accessAbstract
SMART (a Simple Modular Architecture Research Tool) allows the identification and annotation of genetically mobile domains and the analysis of domain architectures (http://SMART.embl-heidelberg.de ). More than 400 domain families found in signalling, extra-cellular and chromatin-associated proteins are detectable. These domains are extensively annotated with respect to phyletic distributions, functional class, tertiary structures and functionally important residues. Each domain found in a non-redundant protein database as well as search parameters and taxonomic information are stored in a relational database system. User interfaces to this database allow searches for proteins containing specific combinations of domains in defined taxa.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, S. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.17.3389 · Cited by 73,302
Predicting coiled coils from protein sequences.
Lupas, A., Van Dyke, M., & Stock, J. (1991) · Science · doi:10.1126/science.252.5009.1162 · Cited by 3,953
Cited by
MUSCLE: multiple sequence alignment with high accuracy and high throughput
Edgar, R. C. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh340 · Cited by 44,662
Initial sequencing and analysis of the human genome
International Human Genome Sequencing Consortium, Whitehead Institute for Biomedical Research, C. F. G. R., Lander, E. S., Linton, L. M., Birren, B., Nusbaum, C., Zody, M. C., Baldwin, J., Devon, K., Dewar, K., et al. (2001) · Nature · doi:10.1038/35057062 · Cited by 24,216
Self-citationRegulation of chromatin structure by site-specific histone H3 methyltransferases
Rea, S., Eisenhaber, F., O'Carroll, D., Strahl, B. D., Sun, Z.-W., Schmid, M., Opravil, S., Mechtler, K., Ponting, C. P., Allis, C. D., et al. (2000) · Nature · doi:10.1038/35020506 · Cited by 2,845
Horizontal gene transfer in prokaryotes: Quantification and classification
Koonin, E. V., Makarova, K. S., & Aravind, L. (2001) · Annual Review of Microbiology · doi:10.1146/annurev.micro.55.1.709 · Cited by 1,126
A large-scale evaluation of computational protein function prediction
Radivojac, P., Clark, W. T., Oron, T. R., Schnoes, A. M., Wittkop, T., Sokolov, A., Graim, K., Funk, C., Verspoor, K., Ben-Hur, A., et al. (2013) · Nature Methods · doi:10.1038/nmeth.2340 · Cited by 1,028
Current challenges and best-practice protocols for microbiome analysis
Bharti, R., & Grimm, D. G. (2021) · Briefings in Bioinformatics · doi:10.1093/bib/bbz155 · Cited by 592
A Specificity Map for the PDZ Domain Family
Tonikian, R., Zhang, Y., Sazinsky, S. L., Currell, B., Yeh, J.-H., Reva, B., Held, H. A., Appleton, B. A., Evangelista, M., Wu, Y., et al. (2008) · PLoS Biology · doi:10.1371/journal.pbio.0060239 · Cited by 476
Sorting out the cellular functions of sorting nexins
Worby, C. A., & Dixon, J. E. (2002) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm974 · Cited by 364
Makarova, K. S. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.2.482 · Cited by 353
BLADE-ON-PETIOLE–Dependent Signaling Controls Leaf and Floral Patterning in Arabidopsis
Hepworth, S. R., Zhang, Y., McKim, S., Li, X., & Haughn, G. W. (2005) · The Plant Cell · doi:10.1105/tpc.104.030536 · Cited by 351
A Role for Insect Galectins in Parasite Survival
Kamhawi, S., Ramalho-Ortigao, M., Pham, V. M., Kumar, S., Lawyer, P. G., Turco, S. J., Barillas-Mury, C., Sacks, D. L., & Valenzuela, J. G. (2004) · Cell · doi:10.1016/j.cell.2004.10.009 · Cited by 266
The phosphatidylinositol 3‐phosphate‐binding FYVE finger
Stenmark, H., Aasland, R., & Driscoll, P. C. (2002) · FEBS Letters · doi:10.1016/s0014-5793(01)03308-7 · Cited by 224
Role of Rab5 in the Recruitment of hVps34/p150 to the Early Endosome
Murray, J. T., Panaretou, C., Stenmark, H., Miaczynska, M., & Backer, J. M. (2002) · Traffic · doi:10.1034/j.1600-0854.2002.30605.x · Cited by 185
Structure of rhodopsin and the superfamily of seven-helical receptors: the same and not the same
Sakmar, T. P. (2002) · Current Opinion in Cell Biology · doi:10.1016/s0955-0674(02)00306-x · Cited by 112
RUN domains: a new family of domains involved in Ras-like GTPase signaling
Callebaut, I., Jean, de Gunzburg, Goud, B., & Mornon, J.-P. (2001) · Trends in Biochemical Sciences · doi:10.1016/s0968-0004(00)01730-8 · Cited by 96
Burden, J. J., Sun, X.-M., García, A. B. G., & Soutar, A. K. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m313689200 · Cited by 82
Kim, A., & Cunningham, K. W. (2015) · Molecular Biology of the Cell · doi:10.1091/mbc.e15-08-0581 · Cited by 67
UbiHub: a data hub for the explorers of ubiquitination pathways
Liu, L., Damerell, D. R., Koukouflis, L., Tong, Y., Marsden, B. D., & Schapira, M. (2019) · Bioinformatics · doi:10.1093/bioinformatics/bty1067 · Cited by 76
Deep learning methods for protein function prediction
Boadu, F., Lee, A., & Cheng, J. (2025) · PROTEOMICS · doi:10.1002/pmic.202300471 · Cited by 53
A New Member of the Sorting Nexin Family Interacts with the C-Terminus of P-Selectin
Florian, V., Schlüter, T., & Bohnensack, R. (2001) · Biochemical and Biophysical Research Communications · doi:10.1006/bbrc.2001.4467 · Cited by 44
Duan, D., Hanson, M., Holland, D. O., & Johnson, M. E. (2022) · Scientific Reports · doi:10.1038/s41598-022-09259-w · Cited by 15
A transcription network underlies the dual genomic coordination of mitochondrial biogenesis
Zhang, F., Lee, A., Freitas, A. V., Herb, J. T., Wang, Z.-H., Gupta, S., Chen, Z., & Xu, H. (2024) · eLife · doi:10.7554/elife.96536.3 · Cited by 8
TMEM151A variants associated with paroxysmal kinesigenic dyskinesia
Huang, H. L., Zhang, Q. X., Huang, F., Long, X. Y., Song, Z., Xiao, B., Li, G. L., Ma, C. Y., & Liu, D. (2023) · Human Genetics · doi:10.1007/s00439-023-02535-3 · Cited by 8
Metadata
- Authors
- Schultz, J.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2000-01-01
- Volume
- 28
- Issue
- 1
- Pages
- 231-234
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2102424043
- Cited by
- 1,378
- References
- 2
- FWCI
- 51.71
- Type
- journal article
- Language
- en
- Open access
- bronze
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.