Mutational fingerprints of aging
Open accessAbstract
Using a lacZ plasmid transgenic mouse model, spectra of spontaneous point mutations were determined in brain, heart, liver, spleen and small intestine in young and old mice. While similar at a young age, the mutation spectra among these organs were significantly different in old age. In brain and heart G:C-->A:T transitions at CpG sites were the predominant mutation, suggesting that oxidative damage is not a major mutagenic event in these tissues. Other base changes, especially those affecting A:T base pairs, positively correlated with increasing proliferative activity of the different tissues. A relatively high percentage of base changes at A:T base pairs and compound mutants were found in both spleen and spontaneous lymphoma, suggesting a possible role of the hypermutation process in splenocytes in carcinogenesis. The similar mutant spectra observed at a young age may reflect a common mutation mechanism for all tissues that could be driven by the rapid cell division that takes place during development. However, the spectra of the young tissues did not resemble that of the most proliferative aged tissue, implying that replicative history per se is not the underlying causal factor of age-related organ-specific differences in mutation spectra. Rather, differences in organ function, possibly in association with replicative history, may explain the divergence in mutation spectra during aging.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Even apparently normal tissues harbor cells with potentially oncogenic mutations.
“In addition, even apparently normal tissues harbor cells with potentially oncogenic mutations, and the incidence of mutant cells increases with age (Jonason et al., 1996; Dolle et al., 2002).”
From Senescent cells, tumor suppression, and organismal aging: good citizens, bad neighbors (2005) · cites this paper as Dolle et al., 2002
The Introduction describes somatic mutations in mouse tissues and says they are thought to play a major causal role in cancer. The Results and Discussion find mutations in non-tumor tissues and similarities between mutations in old spleen and lymphoma, but the study measured mutations in a neutral lacZ reporter, not mutations shown to be oncogenic. Its finding therefore supports the general point, but not the implication that the detected cells carried potentially oncogenic mutations. (LLM, conf=0.84)
Experimental — accuracy not yet measuredThe incidence of mutant cells increases with age.
“In addition, even apparently normal tissues harbor cells with potentially oncogenic mutations, and the incidence of mutant cells increases with age (Jonason et al., 1996; Dolle et al., 2002).”
From Senescent cells, tumor suppression, and organismal aging: good citizens, bad neighbors (2005) · cites this paper as Dolle et al., 2002
The Results and Discussion report higher point-mutation frequencies on average in older mice, with increases in four of five organs examined. The study measured mutations in a lacZ reporter in mice, not the incidence of mutant cells generally, and found no significant increase in brain. (LLM, conf=0.86)
Experimental — accuracy not yet measured
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Oxidative Stress, Caloric Restriction, and Aging
Sohal, R. S., & Weindruch, R. H. (1996) · Science · doi:10.1126/science.273.5271.59 · Cited by 3,133 · see citing works
Kirkwood, T. B. L., & Austad, S. N. (2000) · Nature · doi:10.1038/35041682 · Cited by 1,774 · see citing works
DePinho, R. A. (2000) · Nature · doi:10.1038/35041694 · Cited by 951 · see citing works
A Mutator Phenotype in Cancer 1
Loeb, L. A. (2001) · Cited by 670 · see citing works
The thymine glycosylase MBD4 can bind to the product of deamination at methylated CpG sites
Hendrich, B., Hardeland, U., Ng, H., Jiricny, J., & Bird, A. P. (1999) · Nature · doi:10.1038/45843 · Cited by 637 · see citing works
DNA polymerase η is an A-T mutator in somatic hypermutation of immunoglobulin variable genes
Zeng, X., Winter, D. B., Kasmer, C., Kraemer, K. H., Lehmann, A. R., & Gearhart, P. J. (2001) · Nature Immunology · doi:10.1038/88740 · Cited by 420 · cited 1× · see citing works
“Recently, somatic hypermutation has been associated with DNA polymerase η as an A:T mutator (21,22), which could explain the relatively large fraction of mutations found at A:T base pairs in old spleen and lymphoma (Figs 1 and 2).”
BackgroundProlla, T. A., Baker, S. M., Harris, A. C., Tsao, J., Yao, X., Bronner, C. E., Zheng, B., Gordon, M. D., Reneker, J., Arnheim, N., et al. (1998) · Nature Genetics · doi:10.1038/ng0398-276 · Cited by 360 · see citing works
A mutator phenotype in cancer.
Loeb, L. A. (2001) · PubMed · Cited by 349 · see citing works
Somatic mutation hotspots correlate with DNA polymerase η error spectrum
Rogozin, I. B., Pavlov, Y. I., Bebenek, K., Matsuda, T., & Kunkel, T. A. (2001) · Nature Immunology · doi:10.1038/88732 · Cited by 298 · see citing works
Rapid accumulation of genome rearrangements in liver but not in brain of old mice
Dollé, M. E. T., Giese, H., Hopkins, C. L., Martus, H., Hausdorff, J. M., & Vijg, J. (1997) · Nature Genetics · doi:10.1038/ng1297-431 · Cited by 248 · see citing works
Somatic mutations and aging: a re-evaluation
Vijg, J. (2000) · Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis · doi:10.1016/s0027-5107(99)00202-x · Cited by 243 · see citing works
Distinct spectra of somatic mutations accumulated with age in mouse heart and small intestine
Dollé, M. E. T., Snyder, W. K., Gossen, J. A., Lohman, P. H. M., & Vijg, J. (2000) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.97.15.8403 · Cited by 242 · see citing works
Plasmid-based transgenic mouse model for studying in vivomutations
Boerrigter, M. E. T. I., Dollé, M. E. T., Martus, H., Gossen, J. A., & Vijg, J. (1995) · Nature · doi:10.1038/377657a0 · Cited by 146 · see citing works
Cell renewal in adult mouse tissues.
Edwards, J. L., & KLEIN, R. E. (1961) · PubMed · Cited by 99 · see citing works
Age-Associated Alterations of the Mitochondrial Genome
Lee, C. M., Weindruch, R. H., & Aiken, J. M. (1997) · Free Radical Biology and Medicine · doi:10.1016/s0891-5849(96)00546-1 · Cited by 79 · see citing works
Cariello, N. F. (1998) · Nucleic Acids Research · doi:10.1093/nar/26.1.198 · Cited by 72 · see citing works
INCORPORATION OF THYMIDINE INTO DNA OF MOUSE ORGANS.
Hinrichs, H. R., Petersen, R. O., & Baserga, R. (1964) · PubMed · Cited by 69 · see citing works
Mutagenesis by metal-induced oxygen radicals.
Reid, T. M., Feig, D. I., & Loeb, L. A. (1994) · Environmental Health Perspectives · doi:10.1289/ehp.94102s357 · Cited by 67 · see citing works
Mismatch repair, somatic mutations, and the origins of cancer.
MacPhee, D. G. (1995) · PubMed · Cited by 45 · see citing works
Baross, Á., Makhani, N., Liskay, R. M., & Jirik, F. R. (2001) · Oncogene · doi:10.1038/sj.onc.1204138 · Cited by 35 · see citing works
Meng, Q. R., Singh, N., Heflich, R. H., et al. (2000) · Mutation Research/Genetic Toxicology and Environmental Mutagenesis · doi:10.1016/s1383-5718(99)00157-6 · Cited by 33 · see citing works
Dollé, M. E. T. (1999) · Mutagenesis · doi:10.1093/mutage/14.3.287 · Cited by 33 · see citing works
Smith, C. C., Archer, G. E., Forster, E. J., Lambert, T. R., Rees, R. W., & Lynch, A. M. (1999) · Environmental and Molecular Mutagenesis · doi:10.1002/(sici)1098-2280(1999)34:2/3 · Cited by 28 · see citing works
Cariello, N. F. (1996) · Nucleic Acids Research · doi:10.1093/nar/24.1.119 · Cited by 21 · see citing works
Mutagenesis by Metal-Induced Oxygen Radicals
Reid, T. M., Feig, D. I., & Loeb, L. A. (1994) · Environmental Health Perspectives · doi:10.2307/3431764 · Cited by 18 · see citing works
Web-based access to mouse models of human cancers: the Mouse Tumor Biology (MTB) Database
Bult, C. J. (2001) · Nucleic Acids Research · doi:10.1093/nar/29.1.95 · Cited by 17 · see citing works
Bayesian Analysis of Mutational Spectra
Dunson, D. B., & Tindall, K. R. (2000) · Genetics · doi:10.1093/genetics/156.3.1411 · Cited by 16 · see citing works
Flagged first, then by citations
Research works printed but not linked: 2
- Vijg,J. and Dollé,M.E.T. (2001) Instability of the nuclear genome and the role of DNA repair. In Masoro,E.J. and Austad,S.N. (eds), Handbook of the Biology of Aging, 5th Edn. Academic Press, San Diego, CA, pp. 84-113.
- Vijg,J., Boerrigter,M.E.T.I. and Dollé,M.E.T. (1999) A transgenic mouse model for studying mutations in vivo. In Yu,B.P. (ed.), Methods in Aging Research: Section D. CRC Press, Boca Raton, FL, pp. 621-635.
Cited by
Sorted by citations
Senescent cells, tumor suppression, and organismal aging: good citizens, bad neighbors
Campisi, J. (2005) · Cell · doi:10.1016/j.cell.2005.02.003 · Cited by 2,359 · see citing works
Tissue-specific mutation accumulation in human adult stem cells during life
Blokzijl, F., de Ligt, J., Jager, M., Sasselli, V., Roerink, S., Sasaki, N., Huch, M., Boymans, S., Kuijk, E., Prins, P., et al. (2016) · Nature · doi:10.1038/nature19768 · Cited by 935 · see citing works
Aging and neurodegeneration are associated with increased mutations in single human neurons
Lodato, M. A., Rodin, R. E., Bohrson, C. L., Coulter, M. E., Barton, A. R., Kwon, M., Sherman, M. A., Vitzthum, C. M., Luquette, L. J., Yandava, C. N., et al. (2018) · Science · doi:10.1126/science.aao4426 · Cited by 635 · see citing works
Parrinello, S., Coppe, J.-P., Krtolica, A., & Campisi, J. (2005) · Journal of Cell Science · doi:10.1242/jcs.01635 · Cited by 631 · see citing works
Nuclear genomic instability and aging
Niedernhofer, L. J., Gurkar, A. U., Wang, Y., Vijg, J., Hoeijmakers, J. H. J., & Robbins, P. D. (2018) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-062917-012239 · Cited by 275 · see citing works
Oncogene-induced senescence: the bright and dark side of the response
Gorgoulis, V. G., & Halazonetis, T. D. (2010) · Current Opinion in Cell Biology · doi:10.1016/j.ceb.2010.07.013 · Cited by 257 · see citing works
Protein synthesis and quality control in aging
Anisimova, A. S., Alexandrov, A. I., Makarova, N. E., Gladyshev, V. N., & Dmitriev, S. E. (2018) · Aging · doi:10.18632/aging.101721 · Cited by 172 · see citing works
Divide and conquer: nucleotide excision repair battles cancer and ageing
Mitchell, J. R., Hoeijmakers, J. H., & Niedernhofer, L. J. (2003) · Current Opinion in Cell Biology · doi:10.1016/s0955-0674(03)00018-8 · Cited by 160 · see citing works
Brazhnik, K., Sun, S., Alani, O., Kinkhabwala, M., Wolkoff, A. W., Maslov, A. Y., Dong, X., & Vijg, J. (2020) · Science Advances · doi:10.1126/sciadv.aax2659 · Cited by 114 · see citing works
Somatic Mutagenesis in Mammals and Its Implications for Human Disease and Aging
Zhang, L., & Vijg, J. (2018) · Annual Review of Genetics · doi:10.1146/annurev-genet-120417-031501 · Cited by 108 · see citing works
Dollé, M. E. T., & Vijg, J. (2002) · Genome Research · doi:10.1101/gr.125502 · Cited by 66 · see citing works
- Authors
- Dolle, M. E. T.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2002-01-15
- Volume
- 30
- Issue
- 2
- Pages
- 545-549
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- PMC
- PMC99828
- OpenAlex
- W2117178083
- Cited by
- 87
- References
- 27
- Citations by year
- 2024: 1 · 2023: 2 · 2021: 1 · 2020: 4 · 2019: 1 · 2018: 3 · 2017: 5 · 2016: 3 · 2015: 4 · 2014: 6 · 2013: 3 · 2012: 2
- FWCI
- 2.36
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Nucleic Acids Research (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Institutes of Health (7r01ca075653-03)
- National Institute on Aging (AG13319-05, 1PO1AG17242-01, P01AG017242, P30AG013319)
- National Cancer Institute (1R01CA75653-03)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Aging › Genetics, Aging, and Longevity in Model Organisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA Repair Mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Carcinogens and Genotoxicity Assessment
- Keywords
- mutation spectrum, aging, oxidative damage, tissue-specific mutagenesis, compound mutations, lymphoma, splenocytes, hypermutation, carcinogenesis, cell proliferation
- MeSH terms
- Aging, Animals, Base Sequence, Brain, Cell Division, DNA Damage, DNA Mutational Analysis, Intestine, Small, Lac Operon, Liver, Lymphoma, Male, Mice, Inbred C57BL, Mice, Transgenic, Myocardium, Organ Specificity, Spleen, DNA Fingerprinting, Mutagenesis, Point Mutation, Genes, Reporter, Oxidative Stress, CpG Islands, Models, Animal, Mice
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review