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SMART 4.0: towards genomic data integration
Open accessAbstract
SMART (Simple Modular Architecture Research Tool) is a web tool (http://smart.embl.de/) for the identification and annotation of protein domains, and provides a platform for the comparative study of complex domain architectures in genes and proteins. The January 2004 release of SMART contains 685 protein domains. New developments in SMART are centred on the integration of data from completed metazoan genomes. SMART now uses predicted proteins from complete genomes in its source sequence databases, and integrates these with predictions of orthology. New visualization tools have been developed to allow analysis of gene intron-exon structure within the context of protein domain structure, and to align these displays to provide schematic comparisons of orthologous genes, or multiple transcripts from the same gene. Other improvements include the ability to query SMART by Gene Ontology terms, improved structure database searching and batch retrieval of multiple entries.
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Cites
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, S. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.17.3389 · Cited by 73,302
Gene Ontology: tool for the unification of biology
Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D., Butler, H., Cherry, J. M., Davis, A. P., Dolinski, K., Dwight, S. S., Eppig, J. T., et al. (2000) · Nature Genetics · doi:10.1038/75556 · Cited by 43,206
Comparative Genome and Proteome Analysis of Anopheles gambiae and Drosophila melanogaster
Zdobnov, E. M., von Mering, C., Letunic, I., Torrents, D., Suyama, M., Copley, R. R., Christophides, G. K., Thomasova, D., Holt, R. A., Subramanian, G. M., et al. (2002) · Science · doi:10.1126/science.1077061 · Cited by 553
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CDD: a Conserved Domain Database for protein classification
Marchler-Bauer, A. (2004) · Nucleic Acids Research · doi:10.1093/nar/gki069 · Cited by 1,156
Sequence and structural analysis of BTB domain proteins
Stogios, P. J., Downs, G. S., Jauhal, J. J., Nandra, S. K., & Privé, G. G. (2005) · Genome Biology · doi:10.1186/gb-2005-6-10-r82 · Cited by 694
The immune gene repertoire encoded in the purple sea urchin genome
Hibino, T., Loza-Coll, M., Messier, C., Majeske, A. J., Cohen, A. H., Terwilliger, D. P., Buckley, K. M., Brockton, V., Nair, S. V., Berney, K., et al. (2006) · Developmental Biology · doi:10.1016/j.ydbio.2006.08.065 · Cited by 630
eggNOG: automated construction and annotation of orthologous groups of genes
Jensen, L. J., Julien, P., Kuhn, M., von Mering, C., Muller, J., Doerks, T., & Bork, P. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm796 · Cited by 547
Chemical mechanisms of histone lysine and arginine modifications
Smith, B. C., & Denu, J. M. (2009) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2008.06.005 · Cited by 390
Rules for Modeling Signal-Transduction Systems
Hlavacek, W. S., Faeder, J. R., Blinov, M. L., Posner, R. G., Hucka, M., & Fontana, W. (2006) · Science's STKE · doi:10.1126/stke.3442006re6 · Cited by 350
Cherepanov, P., Devroe, E., Silver, P. A., & Engelman, A. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m406307200 · Cited by 287
Rubin, E. B., Shemesh, Y., Cohen, M., Elgavish, S., Robertson, H. M., & Bloch, G. (2006) · Genome Research · doi:10.1101/gr.5094806 · Cited by 257
Turlure, F. (2006) · Nucleic Acids Research · doi:10.1093/nar/gkl052 · Cited by 181
An ancient evolutionary origin of the Rag1 / 2 gene locus
Fugmann, S. D., Messier, C., Novack, L. A., Cameron, R. A., & Rast, J. P. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0509720103 · Cited by 177
RNA sequence‐ and shape‐dependent recognition by proteins in the ribonucleoprotein particle
Stefl, R., Skrisovska, L., & Allain, F. H. ‐. (2005) · The EMBO Reports · doi:10.1038/sj.embor.7400325 · Cited by 175
Mann, I. K., Chatterjee, R., Zhao, J., He, X., Weirauch, M. T., Hughes, T. R., & Vinson, C. (2013) · Genome Research · doi:10.1101/gr.146654.112 · Cited by 126
A Novel Mammalian Retromer Component, Vps26B
Kerr, M. C., Bennetts, J. S., Simpson, F., Thomas, E. C., Flegg, C., Gleeson, P. A., Wicking, C., & Teasdale, R. D. (2005) · Traffic · doi:10.1111/j.1600-0854.2005.00328.x · Cited by 93
Haider, S., Rehman, S., Ahmad, Y., Raza, A., Tabassum, J., Javed, T., Osman, H. S., & Mahmood, T. (2021) · Agronomy · doi:10.3390/agronomy11112335 · Cited by 26
h-Goliath, paralog of GRAIL, is a new E3 ligase protein, expressed in human leukocytes
Guais, A., Siegrist, S., Solhonne, B., Jouault, H., Guellaën, G., & Bulle, F. (2006) · Gene · doi:10.1016/j.gene.2006.01.028 · Cited by 19
Metadata
- Authors
- Letunic, I.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2004-01-01
- Volume
- 32
- Issue
- 90001
- Pages
- 142D-144
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2140455347
- Cited by
- 1,003
- References
- 3
- FWCI
- 43.64
- Type
- journal article
- Language
- en
- Open access
- bronze
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