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The PredictProtein server
Open accessAbstract
PredictProtein (http://www.predictprotein.org) is an Internet service for sequence analysis and the prediction of protein structure and function. Users submit protein sequences or alignments; PredictProtein returns multiple sequence alignments, PROSITE sequence motifs, low-complexity regions (SEG), nuclear localization signals, regions lacking regular structure (NORS) and predictions of secondary structure, solvent accessibility, globular regions, transmembrane helices, coiled-coil regions, structural switch regions, disulfide-bonds, sub-cellular localization and functional annotations. Upon request fold recognition by prediction-based threading, CHOP domain assignments, predictions of transmembrane strands and inter-residue contacts are also available. For all services, users can submit their query either by electronic mail or interactively via the World Wide Web.
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Citations
Cites
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Intrinsically unstructured proteins and their functions
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SIRT4 is a lysine deacylase that controls leucine metabolism and insulin secretion
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IRGB10 Liberates Bacterial Ligands for Sensing by the AIM2 and Caspase-11-NLRP3 Inflammasomes
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Structure of a Lipid Droplet Protein
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Proteomics Analysis Unravels the Functional Repertoire of Coronavirus Nonstructural Protein 3
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Phylogenomic analysis of the GIY-YIG nuclease superfamily
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Elongation factor Tu is a multifunctional and processed moonlighting protein
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A key role for the peroxisomal ABCD2 transporter in fatty acid homeostasis
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Peroxisomes, myelination, and axonal integrity in the CNS
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Critical Scaffolding Regions of the Tumor Suppressor Axin1 Are Natively Unfolded
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Polycomblike protein PHF1b: a transcriptional sensor for GABA receptor activity
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Metadata
- Authors
- Rost, B., Yachdav, G., & Liu, J.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2004-07-01
- Volume
- 32
- Issue
- Web Server
- Pages
- W321-W326
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2110863368
- Cited by
- 1,453
- References
- 2
- FWCI
- 33.35
- Type
- journal article
- Language
- en
- Open access
- green
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Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
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Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
