PreprintCited by 22

The DOI matches its Crossref record.

Structured sampling of olfactory input by the fly mushroom body

Zheng, Zhihao, Li, Feng, Fisher, Corey, Ali, Iqbal J., Sharifi, Nadiya, Calle-Schuler, Steven, Hsu, Joseph, Masoodpanah, Najla, Kmecova, Lucia, Kazimiers, Tom, Perlman, Eric, Nichols, Matthew, Li, Peter H., Jain, Viren, Bock, Davi D.·2020

Preprint — published as 10.1016/j.cub.2022.06.031 · Paper page

Abstract

Associative memory formation and recall in the adult fruit fly Drosophila melanogaster is subserved by the mushroom body (MB). Upon arrival in the MB, sensory information undergoes a profound transformation. Olfactory projection neurons (PNs), the main MB input, exhibit broadly tuned, sustained, and stereotyped responses to odorants; in contrast, their postsynaptic targets in the MB, the Kenyon cells (KCs), are nonstereotyped, narrowly tuned, and only briefly responsive to odorants. Theory and experiment have suggested that this transformation is implemented by random connectivity between KCs and PNs. However, this hypothesis has been challenging to test, given the difficulty of mapping synaptic connections between large numbers of neurons to achieve a unified view of neuronal network structure. Here we used a recent whole-brain electron microscopy (EM) volume of the adult fruit fly to map large numbers of PN- to-KC connections at synaptic resolution. Comparison of the observed connectome to precisely defined null models revealed unexpected network structure, in which a subset of food-responsive PN types converge on individual downstream KCs more frequently than expected. The connectivity bias is consistent with the neurogeometry: axons of the overconvergent PNs tend to arborize near one another in the MB main calyx, making local KC dendrites more likely to receive input from those types. Computational modeling of the observed PN-to-KC network showed that input from the overconvergent PN types is better discriminated than input from other types. These results suggest an ‘associative fovea’ for olfaction, in that the MB is wired to better discriminate more frequently occurring and ethologically relevant combinations of food-related odors.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1101/2020.04.17.047167

Cites

Statistics

Figures

Image 1
CC-BY-NC-ND · From the PDF
Figure 1 Structured olfactory input to the mushroom body.
Figure 1 Structured olfactory input to the mushroom body.CC-BY-NC-ND · From the PDF
Image 3
CC-BY-NC-ND · From the PDF
Image 4
CC-BY-NC-ND · From the PDF
Image 5
CC-BY-NC-ND · From the PDF
Image 6
CC-BY-NC-ND · From the PDF
Figure 2 Biased sampling of community PNs by KCs.
Figure 2 Biased sampling of community PNs by KCs.CC-BY-NC-ND · From the PDF
Figure 3 Over-convergence of community PNs to KCs.
Figure 3 Over-convergence of community PNs to KCs.CC-BY-NC-ND · From the PDF
Figure 4 Arbor overlap between subsets of community PNs and KCs.
Figure 4 Arbor overlap between subsets of community PNs and KCs.CC-BY-NC-ND · From the PDF
Image 10
CC-BY-NC-ND · From the PDF
Image 11
CC-BY-NC-ND · From the PDF
Image 12
CC-BY-NC-ND · From the PDF
Image 13
CC-BY-NC-ND · From the PDF
Image 14
CC-BY-NC-ND · From the PDF
Image 15
CC-BY-NC-ND · From the PDF
Image 16
CC-BY-NC-ND · From the PDF
Image 17
CC-BY-NC-ND · From the PDF
Image 18
CC-BY-NC-ND · From the PDF
Image 19
CC-BY-NC-ND · From the PDF
Image 20
CC-BY-NC-ND · From the PDF
Subsampling of data from current study, with Caron et al. sample size (random bouton null model)
Subsampling of data from current study, with Caron et al. sample size (random bouton null model)CC-BY-NC-ND · From the PDF
Image 22
CC-BY-NC-ND · From the PDF
Image 23
CC-BY-NC-ND · From the PDF

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

No references could be resolved yet.

Research works printed but not linked: 123

  1. 10.1038/nature09537 · DOI
  2. 10.1016/0025-5564(71)90051-4 · DOI · Paper page
  3. Amin, H. , Suarez-Grimalt, R. , Vrontou, E. , and Lin, A.C. (2020). Localized inhibition in the Drosophila mushroom body. 2020.2003.2026.008300. · DOI
  4. 10.1080/01677060802471718 · DOI
  5. 10.7554/eLife.04577 · DOI · Paper page
  6. Aso, Y. , and Rubin, G.M. (2020). Toward nanoscale localization of memory engrams in Drosophila. J Neurogenet, 1–5. · DOI
  7. 2017, Statistical inference on random dot product graphs: a survey, The Journal of Machine Learning Research, 18, 8393
  8. 10.1016/j.neuron.2014.07.035 · DOI
  9. 10.1016/j.neuron.2016.05.022 · DOI
  10. 10.1523/JNEUROSCI.2753-12.2013 · DOI
  11. 10.1038/nmeth.2451 · DOI · Paper page
  12. Barlow, H.B. (2012). Possible Principles Underlying the Transformations of Sensory Messages. In Sensory Communication (The MIT Press). · DOI
  13. 10.1016/j.neuron.2016.02.015 · DOI · Paper page
  14. Bates, A.S. , Schlegel, P. , Roberts, R.J.V. , Drummond, N. , Tamimi, I.F. M., Turnbull, R. , Zhao, X. , Marin, E.C. , Popovici, P.D. , Dhawan, S. , et al. (2020). Complete connectomic reconstruction of olfactory projection neurons in the fly brain. 2020.2001.2019.911453. · DOI
  15. 10.1038/nn1976 · DOI
  16. 10.1371/journal.pbio.1001932 · DOI
  17. 10.1038/nature07658 · DOI
  18. 10.1002/cne.23037 · DOI
  19. 10.1038/nature12063 · DOI · Paper page
  20. 2019, Re-evaluating Circuit Mechanisms Underlying Pattern Separation, Neuron, 101, 584, 10.1016/j.neuron.2019.01.044 · DOI
  21. 10.1016/j.celrep.2018.07.018 · DOI
  22. 10.1523/JNEUROSCI.6542-10.2011 · DOI
  23. 10.1016/j.neuron.2016.06.012 · DOI · Paper page
  24. 10.1101/lm.5.1.38 · DOI
  25. Dana, H. , Mohar, B. , Sun, Y. , Narayan, S. , Gordus, A. , Hasseman, J.P. , Tsegaye, G. , Holt, G.T. , Hu, A. , Walpita, D. , et al. (2016). Sensitive red protein calcium indicators for imaging neural activity. Elife 5. · DOI
  26. 10.1126/science.1252114 · DOI · Paper page
  27. 10.1126/science.aam9868 · DOI
  28. Dickinson, M.H. , and Muijres, F.T. (2016). The aerodynamics and control of free flight manoeuvres in Drosophila. Philos Trans R Soc Lond B Biol Sci 371. · DOI
  29. 10.1534/genetics.118.300682 · DOI · Paper page
  30. 10.1016/j.cub.2014.11.062 · DOI
  31. 10.1016/j.cub.2013.10.047 · DOI
  32. 10.1073/pnas.1504527112 · DOI
  33. 2015, Drosophila Avoids Parasitoids by Sensing Their Semiochemicals via a Dedicated Olfactory Circuit, PLoS Biol, 13, e1002318, 10.1371/journal.pbio.1002318 · DOI
  34. 10.3389/fnana.2014.00129 · DOI
  35. 10.1038/nature23455 · DOI
  36. 10.1016/j.cub.2016.03.049 · DOI
  37. 10.1016/j.asd.2011.02.004 · DOI
  38. 10.1016/j.cell.2018.08.021 · DOI · Paper page
  39. 10.1038/nature14284 · DOI
  40. 10.1146/annurev-biophys-052118-115655 · DOI
  41. 10.1038/nature10428 · DOI
  42. 10.1038/nn.3547 · DOI
  43. 10.1101/lm.034363.114 · DOI
  44. 10.1016/j.cell.2006.01.050 · DOI
  45. 10.1038/nature07001 · DOI
  46. 10.1523/JNEUROSCI.6284-11.2012 · DOI
  47. 10.1038/nrn1074 · DOI · Paper page
  48. 10.1038/nature15396 · DOI
  49. 10.1371/journal.pbio.1002454 · DOI
  50. 2017, Origins of Cell-Type-Specific Olfactory Processing in the Drosophila Mushroom Body Circuit, Neuron, 95, 357, 10.1016/j.neuron.2017.06.039 · DOI
  51. 1997, The Drosophila mushroom body is a quadruple structure of clonal units each of which contains a virtually identical set of neurones and glial cells, Development, 124, 761, 10.1242/dev.124.4.761 · DOI
  52. 10.1016/j.cell.2007.01.040 · DOI
  53. 10.7554/eLife.04250 · DOI · Paper page
  54. 10.1016/j.cell.2015.06.054 · DOI · Paper page
  55. 10.1038/nmeth.2836 · DOI · Paper page
  56. 10.1016/j.celrep.2012.03.002 · DOI
  57. 10.1016/j.conb.2018.04.030 · DOI
  58. 10.3389/fnsys.2011.00065 · DOI
  59. 10.1016/j.cub.2010.09.060 · DOI
  60. 10.1038/nature05672 · DOI
  61. 10.1007/978-0-387-78261-4_7 · DOI
  62. 10.1515/znc-1981-9-1040 · DOI
  63. 2017, A Drosophila female pheromone elicits species-specific long-range attraction via an olfactory channel with dual specificity for sex and food, BMC Biol, 15, 88, 10.1186/s12915-017-0427-x · DOI
  64. 1999, Development of the Drosophila mushroom bodies: sequential generation of three distinct types of neurons from a neuroblast, Development, 126, 4065, 10.1242/dev.126.18.4065 · DOI
  65. 10.1038/nature17192 · DOI
  66. 10.1002/cne.22184 · DOI
  67. 10.1002/(SICI)1096-9861(19960902)372:4<487::AID-CNE1>3.0.CO;2-0 · DOI
  68. Li, P.H. , Lindsey, L.F. , Januszewski, M. , Zheng, Z. , Bates, A.S. , Taisz, I. , Tyka, M. , Nichols, M. , Li, F. , Perlman, E. , et al. (2019). Automated Reconstruction of a Serial-Section EM Drosophila Brain with Flood-Filling Networks and Local Realignment. 605634. · DOI · Paper page
  69. 10.1016/j.conb.2008.08.010 · DOI
  70. 10.1038/nn.3660 · DOI
  71. 10.1016/j.cell.2007.03.006 · DOI
  72. 2017, Optimal Degrees of Synaptic Connectivity, Neuron, 93, 1153, 10.1016/j.neuron.2017.01.030 · DOI
  73. 2019, Constraining computational models using electron microscopy wiring diagrams, Curr Opin Neurobiol, 58, 94, 10.1016/j.conb.2019.07.007 · DOI
  74. Liu, Q. , Yang, X. , Tian, J. , Gao, Z. , Wang, M. , Li, Y. , and Guo, A. (2016). Gap junction networks in mushroom bodies participate in visual learning and memory in Drosophila. Elife 5. · DOI
  75. 10.1038/nature14170 · DOI
  76. 10.1038/nn.2235 · DOI · Paper page
  77. MacQueen, J. (1967). Some methods for classification and analysis of multivariate observations. Paper presented at: Proceedings of the fifth Berkeley symposium on mathematical statistics and probability (Oakland, CA, USA).
  78. 10.1016/j.conb.2015.02.006 · DOI
  79. 10.1113/jphysiol.1969.sp008820 · DOI · Paper page
  80. 2010, The organisation of invertebrate brains: cells, synapses and circuits, 91, 64
  81. Meinertzhagen, I.A. (2018). Of what use is connectomics? A personal perspective on the Drosophila connectome. J Exp Biol 221. · DOI · Paper page
  82. 10.1073/pnas.1215680110 · DOI
  83. 10.1016/j.neuron.2010.08.014 · DOI
  84. 10.1007/s00357-014-9161-z · DOI
  85. 10.1016/j.neuron.2008.07.040 · DOI · Paper page
  86. 10.1073/pnas.1506763112 · DOI · Paper page
  87. Newman, M. (2018). 7. Measures and metrics. In Networks (Oxford University Press). · DOI
  88. 10.1038/nature10131 · DOI · Paper page
  89. 10.1038/nature06864 · DOI · Paper page
  90. 10.1016/j.conb.2015.10.002 · DOI
  91. Pehlevan, C. , Genkin, A. , and Chklovskii, D.B. (2017). A clustering neural network model of insect olfaction. Paper presented at: Signals, Systems, and Computers, 2017 51st Asilomar Conference on (IEEE). · DOI
  92. 10.1016/j.cub.2013.07.060 · DOI
  93. 2016, Aversive Learning and Appetitive Motivation Toggle Feed-Forward Inhibition in the Drosophila Mushroom Body, Neuron, 90, 1086, 10.1016/j.neuron.2016.04.034 · DOI
  94. 10.1038/nature12160 · DOI · Paper page
  95. 10.1523/JNEUROSCI.4582-13.2014 · DOI
  96. 10.1073/pnas.0704523104 · DOI
  97. 10.1038/nn1881 · DOI
  98. Schneider-Mizell, C.M. , Gerhard, S. , Longair, M. , Kazimiers, T. , Li, F. , Zwart, M.F. , Champion, A. , Midgley, F.M. , Fetter, R.D. , Saalfeld, S. , et al. (2016). Quantitative neuroanatomy for connectomics in Drosophila. Elife 5. · DOI · Paper page
  99. 10.3389/fphys.2014.00059 · DOI
  100. 10.1007/BF00234464 · DOI
  101. 10.1186/s12915-017-0389-z · DOI
  102. 10.1038/nature07983 · DOI
  103. 10.1007/s00359-015-1023-6 · DOI · Paper page
  104. 10.1523/JNEUROSCI.2360-11.2011 · DOI
  105. 10.1146/annurev-psych-122414-033634 · DOI · Paper page
  106. 10.1016/j.cell.2012.09.046 · DOI
  107. 10.1073/pnas.1510103112 · DOI
  108. 10.1007/BF00327741 · DOI
  109. 2018, Structural aspects of plasticity in the nervous system of Drosophila, Neural Dev, 13, 14, 10.1186/s13064-018-0111-z · DOI
  110. 10.1038/nature02980 · DOI
  111. Takemura, S.Y. , Aso, Y. , Hige, T. , Wong, A. , Lu, Z. , Xu, C.S. , Rivlin, P.K. , Hess, H. , Zhao, T. , Parag, T. , et al. (2017). A connectome of a learning and memory center in the adult Drosophila brain. Elife 6. · DOI · Paper page
  112. 10.1016/j.cub.2004.03.006 · DOI
  113. 10.1002/cne.21692 · DOI · Paper page
  114. 10.1038/295405a0 · DOI
  115. 2010, A new process for wine production by penetration of yeast in uncrushed frozen grapes, Appl Biochem Biotechnol, 162, 1109, 10.1007/s12010-009-8881-8 · DOI
  116. 10.1152/jn.01283.2007 · DOI
  117. 10.1016/j.cub.2007.02.043 · DOI
  118. 10.1016/j.neuron.2011.09.021 · DOI
  119. 10.1016/S0092-8674(02)00707-9 · DOI
  120. 10.1038/srep29481 · DOI
  121. 10.1002/cne.10155 · DOI
  122. Zhang, X. , Coates, K. , Dacks, A. , Gunay, C. , Lauritzen, J.S. , Li, F. , Calle-Schuler, S.A. , Bock, D. , and Gaudry, Q. (2019). Local synaptic inputs support opposing, network-specific odor representations in a widely projecting modulatory neuron. Elife 8. · DOI
  123. 10.1016/j.cell.2018.06.019 · DOI · Paper page

Cited by

Sorted by citations

Metadata

Authors
Zheng, Z., Li, F., Fisher, C., Ali, I. J., Sharifi, N., Calle-Schuler, S., Hsu, J., Masoodpanah, N., Kmecova, L., Kazimiers, T., Perlman, E., Nichols, M., Li, P. H., Jain, V., & Bock, D. D.
Publisher
openRxiv
Published
2020-04-18
Cited by
22
References
0
Type
Preprint

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review