The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
Screening the human druggable genome identifies ABHD17B as an anti-fibrotic target in hepatic stellate cells
Open accessPreprint — published as 10.1038/s41467-025-56900-z · Paper page
Abstract
Hepatic stellate cells (HSCs) are activated with chronic liver injury and transdifferentiate into myofibroblasts, which produce excessive extracellular matrices that form the fibrotic scar. While the progression of fibrosis is understood to be the cause of end-stage liver disease, there are no approved therapies directed at interfering with the activity of HSC myofibroblasts. We performed a high-throughput small interfering RNA (siRNA) screen in primary human HSC myofibroblasts to identify gene products necessary for the fibrotic phenotype of HSCs. We found that depletion of ABHD17B promotes the inactivation of HSCs, characterized by reduced COL1A1 and ACTA2 expression and accumulation of lipid droplets. Mice deficient for Abhd17b are also protected from fibrosis in the setting of in vivo liver injury. While ABHD17B is a depalmitoylase, our data suggest that ABHD17B promotes fibrosis through pathways independent of depalmitoylation that include interaction with MYO1B to modulate gene expression and HSC migration. Together, our results provide an analysis of the phenotypic consequences for siRNAs targeting RNAs from >9,500 genes in primary human HSCs and identify ABHD17B as a potential therapeutic target to inhibit liver fibrosis.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
Flagged first, then by citations
Research works printed but not linked: 62
- 10.1053/gast.2002.33023 · DOI
- 10.1002/hep.23623 · DOI
- 10.1016/j.jhep.2017.07.022 · DOI · Paper page
- 10.1073/pnas.82.24.8681 · DOI · Paper page
- 10.1172/JCI114886 · DOI
- 2013, Fate tracing reveals hepatic stellate cells as dominant contributors to liver fibrosis independent of its aetiology, Nature Communications, 4, 1
- 2008, Hepatic Stellate Cells: Protean, Multifunctional, and Enigmatic Cells of the Liver, 88, 125
- 10.1172/JCI200524282 · DOI · Paper page
- 10.1002/hep.21260 · DOI
- 10.1073/pnas.1201840109 · DOI · Paper page
- 10.1053/j.gastro.2012.06.036 · DOI · Paper page
- 2017, Tricyclic Antidepressants Promote Ceramide Accumulation to Regulate Collagen Production in Human Hepatic Stellate Cells, Scientific Reports, 7, 44867, 10.1038/srep44867 · DOI
- 2022, Nanchangmycin regulates FYN, PTK2, and MAPK1/3 to control the fibrotic activity of human hepatic stellate cells, Elife, 11, e74513, 10.7554/eLife.74513 · DOI
- 2014, Automation Considerations for RNAi Library Formatting and High Throughput Transfection. eBook. eISBN 978-1-60805-940-9, Frontiers in RNAi, 1, 21
- 10.1186/s13073-016-0285-0 · DOI
- 10.1002/hep.31987 · DOI · Paper page
- 10.1073/pnas.96.5.2345 · DOI
- 10.1016/S0016-5085(03)00666-8 · DOI
- 10.1006/bbrc.1997.7892 · DOI
- 10.7554/eLife.11306 · DOI
- 10.1084/jem.20110551 · DOI
- 10.1021/acscatal.5b01539 · DOI
- 10.1038/s41589-021-00785-8 · DOI
- 2021, AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models, Nucleic Acids Res, 50, D439
- 10.1002/jcc.20292 · DOI
- 10.1016/0263-7855(96)00018-5 · DOI · Paper page
- 10.1002/jcc.20289 · DOI · Paper page
- 10.1038/nmeth.1293 · DOI
- 10.1038/ncb2262 · DOI
- 10.1016/j.jhep.2017.07.027 · DOI · Paper page
- 10.1056/NEJM200102083440610 · DOI
- 10.1056/NEJMoa0907929 · DOI · Paper page
- 2022, HK1 from hepatic stellate cell–derived extracellular vesicles promotes progression of hepatocellular carcinoma, Nat. Metab, 4, 1306, 10.1038/s42255-022-00642-5 · DOI
- 10.1152/ajpgi.00105.2021 · DOI
- 10.1093/emboj/17.10.2855 · DOI
- 10.1016/j.cell.2007.11.042 · DOI
- 2019, Exogenous expression of caveolin-1 is sufficient for hepatic stellate cell activation, J. Cell. Biochem, 120, 19031, 10.1002/jcb.29226 · DOI
- 10.1074/jbc.M201083200 · DOI
- 1993, Specific binding of heterogeneous ribonucleoprotein particle protein K to the human c-myc promoter, in vitro, J Biol Chem, 268, 18249, 10.1016/S0021-9258(17)46837-2 · DOI
- 10.1002/jcb.20486 · DOI
- 10.1136/gut.50.4.571 · DOI · Paper page
- 10.1016/j.cub.2014.11.054 · DOI
- Liu, J. et al. Stk38 Modulates Rbm24 Protein Stability to Regulate Sarcomere Assembly in Cardiomyocytes. Sci Rep-uk 7, 44870 (2017). · DOI
- 10.1016/0014-4827(91)90556-A · DOI
- 10.1126/science.1159419 · DOI
- 10.1073/pnas.1207811109 · DOI
- 10.1091/mbc.10.5.1477 · DOI
- 10.1242/jcs.097212 · DOI
- 10.1038/nature01246 · DOI
- 2016, Purinergic receptor X7 mediates leptin induced GLUT4 function in stellate cells in nonalcoholic steatohepatitis, Biochim. Biophys. Acta (BBA) - Mol. Basis Dis, 1862, 32, 10.1016/j.bbadis.2015.10.009 · DOI
- 10.1002/cbic.201700693 · DOI
- 2019, Roles of Myosin-Mediated Membrane Trafficking in TGF-β Signaling, Int. J. Mol. Sci, 20, 3913, 10.3390/ijms20163913 · DOI
- 10.1126/scitranslmed.aay8798 · DOI · Paper page
- 2001, Fibroblasts from Idiopathic Pulmonary Fibrosis and Normal Lungs Differ in Growth Rate, Apoptosis, and Tissue Inhibitor of Metalloproteinases Expression. Am J Resp Cell Mol, 24, 591
- 2019, Primary cell-based phenotypic assays to pharmacologically and genetically study fibrotic diseases in vitro, J Biological Methods, 6, e115
- 2020, Rapid purification and metabolomic profiling of synaptic vesicles from mammalian brain, Elife, 9, e59699, 10.7554/eLife.59699 · DOI
- Love, M. I. , Huber, W. & Anders, S . Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol 15, 550 (2014). · DOI · Paper page
- 10.1038/nmeth.3213 · DOI · Paper page
- 10.1002/jcc.20945 · DOI · Paper page
- 2020, An Allosteric Binding Site on Sortilin Regulates the Trafficking of VLDL, PCSK9, and LDLR in Hepatocytes, Biochemistry, 59, 4321, 10.1021/acs.biochem.0c00741 · DOI
- 10.1038/nmeth.4067 · DOI
- 10.1186/1471-2105-9-40 · DOI · Paper page
Metadata
- Authors
- Li, W., Sparks, R. P., Sun, C., Yang, Y., Pantano, L., Kirchner, R., Weilheimer, A., Toles, B. J., Chen, J. Y., Moran, S. P., Barrera, V., Li, Z., Zhou, P., Brassil, M. L., Wrobel, D., Sui, S. J. H., Aspnes, G., Schuler, M., Smith, J., Medoff, B. D., Zhou, C., Boustany-Kari, C. M., Rippmann, J. F., Santos, D. M., Doerner, J. F., & Mullen, A. C.
- Affiliations
- Harvard University (US)
- University of Massachusetts Chan Medical School (US)
- Boehringer Ingelheim (Germany) (DE)
- Broad Institute (US)
- Corresponding author
- Mullen, Alan C.
- ORCID
- Venue
- Nature Communications
- Publisher
- openRxiv
- Published
- 2023-08-07
- Volume
- 16
- Issue
- 1
- Pages
- 2109-2109
- ISSN
- 2041-1723 (ISSN-L)
- PMC
- PMC11873113
- OpenAlex
- W4408080607
- Cited by
- 5
- References
- 1
- Citations by year
- 2026: 3 · 2025: 2
- FWCI
- 2.78
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Nature Communications (publishedVersion, cc-by-nc-nd)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
- PubMed Central (publishedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- Boehringer Ingelheim
- Topics
- Health Sciences › Medicine › Hepatology › Liver physiology and pathology
- Health Sciences › Medicine › Hepatology › Liver Disease Diagnosis and Treatment
- Life Sciences › Pharmacology, Toxicology and Pharmaceutics › Pharmacology › Drug-Induced Hepatotoxicity and Protection
- Keywords
- hepatic stellate cells, liver fibrosis, myofibroblast transdifferentiation, depalmitoylation, MYO1B, lipid droplets, COL1A1, ACTA2, HSC migration, siRNA screen
- MeSH terms
- Collagen Type I, alpha 1 Chain, Actins, Animals, Cell Movement, Humans, Liver, Liver Cirrhosis, Male, Mice, Inbred C57BL, Mice, Knockout, Collagen Type I, RNA, Small Interfering, Mice, Hepatic Stellate Cells, Myofibroblasts, Lipid Droplets
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review