PreprintCited by 3DNA Repair MechanismsEpigenetics and DNA MethylationNeurogenesis and neuroplasticity mechanisms

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“Loss of alkyladenine DNA glycosylase alters gene expression in the developing mouse brain and leads to reduced anxiety and improved memory”

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Preprint — published as 10.1016/j.dnarep.2024.103632 · Paper page

Abstract

Neurodevelopment is a tightly coordinated process, during which the genome is exposed to spectra of endogenous agents at different stages of differentiation. Emerging evidence indicates that DNA damage is an important feature of developing brain, tightly linked to gene expression and neuronal activity. Some of the most frequent DNA damage includes changes to DNA bases, which are recognized by DNA glycosylases and repaired through base excision repair (BER) pathway. The only mammalian DNA glycosylase able to remove frequent alkylated DNA based is alkyladenine DNA glycosylase (Aag, aka Mpg). We recently demonstrated that, besides its role in DNA repair, AAG affects expression of neurodevelopmental genes in human cells. Aag was further proposed to act as reader of epigenetic marks, including 5-hydroxymethylcytosine (5hmC), in the mouse brain. Despite the potential Aag involvement in the key brain processes, the impact of Aag loss on developing brain remains unknown. Here, by using Aag knockout ( Aag -/- ) mice, we show that Aag absence leads to reduced DNA break levels, evident in lowered number of γH2AX foci in postnatal day 5 (P5) hippocampi. This is accompanied by changes in 5hmC signal intensity in different hippocampal regions. Transcriptome analysis of hippocampi and prefrontal cortex, at different developmental stages, indicates that lack of Aag alters gene expression, primarily of genes involved in regulation of response to stress. Across all developmental stages tested aldehyde dehydrogenase 2 ( Aldh2 ) emerged as one of the most prominent genes deregulated in Aag-dependent manner. In line with the changes in hippocampal DNA damage levels and the gene expression, adult Aag -/- mice exhibit altered behavior, evident in decreased anxiety levels determined in the Elevated Zero Maze and increased alternations in the Elevated T Maze tests. Taken together these results suggests that Aag has functions in modulation of genome dynamics during brain development, important for animal behavior. Highlights: Aag loss results in reduced DNA damage signal in developing hippocampus; 5hmC signal intensity is perturbed in hippocampal regions of Aag -/- mice; Gene expression is altered in Aag -/- hippocampus and prefrontal cortex; Aag represses Aldh2 expression; Aag -/- mice have reduced anxiety and improved memory.

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Research works printed but not linked: 57

  1. 10.1016/j.neuron.2014.06.034 · DOI · Paper page
  2. 10.1038/nn.3356 · DOI · Paper page
  3. 10.1073/pnas.1119798109 · DOI
  4. 10.1126/science.1127196 · DOI
  5. 2021, Neuronal enhancers are hotspots for DNA single-strand break repair, Nature, 593, 440, 10.1038/s41586-021-03468-5 · DOI · Paper page
  6. 10.1126/science.abb9032 · DOI · Paper page
  7. 2022, The Role of DNA Damage in Neural Plasticity in Physiology and Neurodegeneration, Front Cell Neurosci, 16, 836885, 10.3389/fncel.2022.836885 · DOI
  8. 2022, The threat of programmed DNA damage to neuronal genome integrity and plasticity, Nat Genet, 54, 115, 10.1038/s41588-021-01001-y · DOI
  9. 10.1101/cshperspect.a012583 · DOI · Paper page
  10. 2012, Balancing repair and tolerance of DNA damage caused by alkylating agents, Nature reviews, Cancer, 12, 104
  11. 10.1101/sqb.2000.65.127 · DOI · Paper page
  12. 10.1667/RR3041.1 · DOI · Paper page
  13. 10.1158/1541-7786.MCR-09-0411 · DOI
  14. 10.1083/jcb.201312078 · DOI
  15. 10.1016/j.celrep.2014.08.036 · DOI · Paper page
  16. 10.1016/j.dnarep.2011.10.004 · DOI
  17. 2017, PARP inhibitors protect against sex- and AAG-dependent alkylation-induced neural degeneration, Oncotarget, 8, 68707, 10.18632/oncotarget.19844 · DOI
  18. 2017, Alkylation induced cerebellar degeneration dependent on Aag and Parp1 does not occur via previously established cell death mechanisms, PLoS One, 12, e0184619, 10.1371/journal.pone.0184619 · DOI
  19. M. Allocca , J.J. Corrigan , A. Mazumder , K.R. Fake , L.D. Samson , Inflammation, necrosis, and the kinase RIP3 are key mediators of AAG-dependent alkylation-induced retinal degeneration, Sci Signal, 12 (2019). · DOI
  20. 10.1073/pnas.0807030106 · DOI
  21. 2022, Active DNA demethylation promotes cell fate specification and the DNA damage response, Science, 378, 983, 10.1126/science.add9838 · DOI · Paper page
  22. 10.1038/ni974 · DOI
  23. 2021, Cellular response to endogenous DNA damage: DNA base modifications in gene expression regulation, DNA Repair (Amst), 99, 103051, 10.1016/j.dnarep.2021.103051 · DOI
  24. 10.1016/j.dnarep.2021.103204 · DOI
  25. M.M.L. de Sousa , J. Ye , L. Luna , G. Hildrestrand , K. Bjoras , K. Scheffler , M. Bjoras , Impact of Oxidative DNA Damage and the Role of DNA Glycosylases in Neurological Dysfunction, Int J Mol Sci, 22 (2021). · DOI
  26. 2019, Alkyladenine DNA glycosylase associates with transcription elongation to coordinate DNA repair with gene expression, Nat Commun, 10, 5460, 10.1038/s41467-019-13394-w · DOI
  27. 10.1073/pnas.2131819100 · DOI
  28. 10.1074/jbc.M313155200 · DOI
  29. 10.1016/j.cell.2013.02.004 · DOI · Paper page
  30. 10.1186/gb-2013-14-10-r119 · DOI
  31. 10.1021/acs.jmedchem.6b01761 · DOI
  32. 10.1038/nn.4008 · DOI
  33. 10.1016/j.cub.2015.10.049 · DOI
  34. 2020, Alkyladenine DNA glycosylase deficiency uncouples alkylation-induced strand break generation from PARP-1 activation and glycolysis inhibition, Sci Rep, 10, 2209, 10.1038/s41598-020-59072-6 · DOI
  35. 2021, Excision of mutagenic replication-blocking lesions suppresses cancer but promotes cytotoxicity and lethality in nitrosamine-exposed mice, Cell Rep, 34, 108864, 10.1016/j.celrep.2021.108864 · DOI
  36. 10.1073/pnas.1014993108 · DOI
  37. 10.3390/ijms15011554 · DOI
  38. 10.1038/nn.2959 · DOI
  39. 10.1016/j.celrep.2016.01.035 · DOI
  40. 10.1016/j.ygeno.2014.08.021 · DOI
  41. L. Milano , C.F. Charlier , R. Andreguetti , T. Cox , E. Healing , M.P. Thome , R.M. Elliott , L.D. Samson , J.Y. Masson , G. Lenz , J.A.P. Henriques , A. Nohturfft , L.B. Meira , A DNA repairindependent role for alkyladenine DNA glycosylase in alkylation-induced unfolded protein response, Proc Natl Acad Sci U S A, 119 (2022). · DOI
  42. 2018, Interplay between base excision repair protein XRCC1 and ALDH2 predicts overall survival in lung and liver cancer patients, Cell Oncol (Dordr), 41, 527
  43. 2021, NEIL1 and NEIL2 DNA glycosylases modulate anxiety and learning in a cooperative manner in mice, Commun Biol, 4, 1354, 10.1038/s42003-021-02864-x · DOI
  44. 2021, DNA repair enzyme NEIL3 enables a stable neural representation of space by shaping transcription in hippocampal neurons, iScience, 24, 103470, 10.1016/j.isci.2021.103470 · DOI
  45. 10.1016/j.molcel.2020.10.012 · DOI
  46. 2020, The failure of two major formaldehyde catabolism enzymes (ADH5 and ALDH2) leads to partial synthetic lethality in C57BL/6 mice, Genes Environ, 42, 21, 10.1186/s41021-020-00160-4 · DOI
  47. 2018, Aldehyde dehydrogenase 2 in the spotlight: The link between mitochondria and neurodegeneration, Neurotoxicology, 68, 19, 10.1016/j.neuro.2018.06.005 · DOI
  48. 2021, Brain ethanol metabolism by astrocytic ALDH2 drives the behavioural effects of ethanol intoxication, Nat Metab, 3, 337, 10.1038/s42255-021-00357-z · DOI
  49. 2016, Mitochondrial aldehyde dehydrogenase 2 protects gastric mucosa cells against DNA damage caused by oxidative stress, Free Radic Biol Med, 93, 165, 10.1016/j.freeradbiomed.2016.02.001 · DOI
  50. 10.1073/pnas.94.24.13087 · DOI
  51. 2016, The impact of mitochondrial aldehyde dehydrogenase (ALDH2) activation by Alda-1 on the behavioral and biochemical disturbances in animal model of depression, Brain Behav Immun, 51, 144, 10.1016/j.bbi.2015.08.004 · DOI
  52. 10.1093/bioinformatics/btu638 · DOI · Paper page
  53. 10.1093/nar/gkv007 · DOI · Paper page
  54. 10.1093/bioinformatics/btp184 · DOI · Paper page
  55. 2018, Cell Detection with Star-Convex Polygons, Lect Notes Comput Sc, 11071, 265, 10.1007/978-3-030-00934-2_30 · DOI · Paper page
  56. H. Wickham , ggplot2 : Elegant Graphics for Data Analysis, in: Use R!,, 2nd ed., Springer International Publishing : Imprint: Springer,, Cham, 2016, pp. 1 online resource (XVI, 260 pages 232 illustrations, 140 illustrations in color.
  57. 10.1007/BF02244871 · DOI · Paper page

Metadata

Authors
Bordin, D. L., Grooms, K., Montaldo, N. P., Martin, S. L. F., Sætrom, P., Samson, L. D., Bjørås, M., & van Loon, B.
Affiliations
  • University of Oslo (NO)
  • Norwegian University of Science and Technology (NO)
  • Oslo University Hospital (NO)
  • Koch Institute for Integrative Cancer Research At MIT (US)
Corresponding author
van Loon, Barbara
Venue
DNA repair
Publisher
openRxiv
Published
2023-10-05
Volume
135
Pages
103632-103632
ISSN
1568-7856 (ISSN-L)
OpenAlex
W4391091835
Cited by
3
References
1
Citations by year
2026: 1 · 2025: 2
FWCI
0.41
Type
journal article
Language
en
Open access
Licence
cc-by-nc
Locations
  • DNA repair (publishedVersion, cc-by-nc)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
  • PubMed (publishedVersion)
  • NORA - Norwegian Open Research Archives (submittedVersion, other-oa)
Funders
  • Norges Teknisk-Naturvitenskapelige Universitet
  • Helse Midt-Norge
  • Norges Forskningsråd (335324)
  • Fakultet for medisin og helsevitenskap, Norges Teknisk-Naturvitenskapelige Universitet
  • Faculty of Medicine and Health, University of Sydney
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA Repair Mechanisms
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
  • Life Sciences › Neuroscience › Developmental Neuroscience › Neurogenesis and neuroplasticity mechanisms
Keywords
alkyladenine DNA glycosylase, MPG, base excision repair, DNA damage, brain development, hippocampus, prefrontal cortex, 5-hydroxymethylcytosine, epigenetic modifications, stress response genes, ALDH2, anxiety, memory, γH2AX foci
MeSH terms
Animals, Anxiety, Brain, DNA, Humans, Mammals, Gene Expression, DNA Glycosylases, Mice

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