APOE4 increases energy metabolism in APOE-isogenic iPSC-derived neurons
Open accessPreprint — published as 10.3390/cells13141207 · Paper page
Abstract
The apolipoprotein E4 (APOE4) allele represents the major genetic risk factor for Alzheimer’s disease (AD). In contrast, APOE2 is known to lower the AD risk while APOE3 is defined as risk neutral. APOE plays a prominent role in the bioenergetic homeostasis of the brain, and early-stage metabolic changes have been detected in brains of AD patients. Although APOE is primarily expressed by astrocytes in the brain, neurons also have been shown as source for APOE. However, little is known about the differential role of the three APOE isoforms for neuronal energy homeostasis. In this study, we generated pure human neurons (iN cells) from APOE-isogenic induced pluripotent stem cells (iPSCs), expressing either APOE2, APOE3, APOE4 or carrying an APOE-knockout (KO) to investigate APOE isoform-specific effects on neuronal energy metabolism. We showed that endogenously produced APOE4 enhanced mitochondrial ATP production in APOE-isogenic iN cells but not in the corresponding iPS cell line. This effect neither correlated with the expression levels of mitochondrial fission or fusion proteins, nor with the intracellular or secreted levels of APOE, which were similar for APOE2, APOE3 and APOE4 iN cells. ATP production and basal respiration in APOE-KO iN cells strongly differed from APOE4 and more closely resembled APOE2 and APOE3 iN cells indicating a gain-of-function mechanism of APOE4 rather than a loss-of-function. Taken together, our findings in APOE isogenic iN cells reveal an APOE genotype-dependent and neuron-specific regulation of oxidative energy metabolism.
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In vitro studies show APOE genetic variation can alter cellular metabolic profiles in distinct cell types including astrocytes, microglia, and neurons.
“Studies performed in vitro have shown that APOE genetic variation can alter cellular metabolic profiles in distinct cell types including astrocytes, microglia, and neurons [27][28][29][30] .”
From APOE4-drives brain bioenergetic shifts independent of Alzheimer’s disease pathology (2026) · cites this paper as [30]
The Discussion reports that APOE4 increased mitochondrial and glycolytic ATP production in the study’s iPSC-derived neurons. It also describes a prior finding of altered glycolysis in astrocytes, but the paper does not report an APOE-related metabolic change in microglia. No page numbers are available in our copy. (LLM, conf=0.88)
Experimental — accuracy not yet measuredThe reliance on glucose for ATP production is consistent with past studies.
“This data tracks with our functional glycolytic assays and indicates a reliance on glucose for ATP production which is consistent with past studies 30,31,46 .”
From APOE4-drives brain bioenergetic shifts independent of Alzheimer’s disease pathology (2026) · cites this paper as [30]
The Results (§3.2; page unavailable) report glycolytic ATP production in the studied cells, supporting a role for glucose metabolism in ATP production. But the Discussion (§4; page unavailable) says the induced neurons primarily use oxidative phosphorylation under basal conditions; the paper does not establish a general reliance on glucose-driven glycolysis for ATP production. (LLM, conf=0.83)
Experimental — accuracy not yet measuredAPOE genetic variation alters neuronal health and metabolism.
“In these limited studies, APOE genetic variation has been found to alter neuronal health and metabolism 30,31 .”
From APOE4-drives brain bioenergetic shifts independent of Alzheimer’s disease pathology (2026) · cites this paper as [30]
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Cited by
Sorted by citations
APOE genotype-dependent differences in human astrocytic energy metabolism
Budny, V., Bodenmann, C., Zürcher, K. J., Krüger, M., de Leeuw, S. M., Weber, R. Z., Rust, R., Ravotto, L., Ruminot, I., Barros, L. F., et al. (2025) · Frontiers in Cellular Neuroscience · doi:10.3389/fncel.2025.1603657 · Cited by 6 · see citing works
Self-citationAPOE4-drives brain bioenergetic shifts independent of Alzheimer’s disease pathology
Lysaker, C. R., Johnson, C. N., Csikos, V., Franczak, E., Benson, M., Gilmore, C. A., Birky, C. J., Davis, X., McCoin, C. S., Smith, K. P., et al. (2026) · npj Dementia · doi:10.1038/s44400-026-00105-8 · Cited by 1 · see citing works
- Authors
- Budny, V., Knöpfli, Y., Meier, D., Zürcher, K., Bodenmann, C., Peter, S. L., Müller, T., Tardy, M., Cortijo, C., & Tackenberg, C.
- Affiliations
- University of Zurich (CH)
- Corresponding author
- Tackenberg, Christian
- Venue
- Cells
- Publisher
- openRxiv
- Published
- 2024-06-03
- Volume
- 13
- Issue
- 14
- Pages
- 1207-1207
- ISSN
- 2073-4409 (ISSN-L)
- PMC
- PMC11274733
- OpenAlex
- W4400724298
- Cited by
- 14
- References
- 0
- Citations by year
- 2026: 7 · 2025: 5 · 2024: 2
- FWCI
- 3.62
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- cc-by
- Locations
- Cells (publishedVersion, cc-by)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Zurich Open Repository and Archive (University of Zurich) (acceptedVersion, cc-by-nc-nd)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Repository for Publications and Research Data (ETH Zurich) (submittedVersion, cc-by)
- Zurich Open Repository and Archive (University of Zurich) (submittedVersion, cc-by)
- ETH Zürich Research Collection
- Zurich Open Repository and Archive (University of Zurich)
- Funders
- Eidgenössische Technische Hochschule Zürich
- Topics
- Health Sciences › Medicine › Physiology › Alzheimer's disease research and treatments
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Mitochondrial Function and Pathology
- Life Sciences › Neuroscience › Neurology › Neuroinflammation and Neurodegeneration Mechanisms
- Keywords
- APOE ε4, APOE isoforms, neuronal energy metabolism, iPSC-derived neurons, mitochondrial ATP production, basal respiration, oxidative metabolism, Alzheimer's disease risk, apolipoprotein E deficiency, gain-of-function mechanism, mitochondrial fission and fusion
- MeSH terms
- Adenosine Triphosphate, Apolipoproteins E, Cell Differentiation, Energy Metabolism, Humans, Mitochondria, Neurons, Apolipoprotein E4, Induced Pluripotent Stem Cells
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