PreprintCited by 6Cellular transport and secretionATP Synthase and ATPases ResearchLipid metabolism and biosynthesis

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Control of Golgi- V-ATPase through Sac1-dependent co-regulation of PI(4)P and cholesterol

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Preprint — published as 10.1038/s41467-025-63125-7 · Paper page

Abstract

Sac1 is a conserved phosphoinositide phosphatase, whose loss-of-function compromises cell and organism viability. Here, we employed acute auxin-inducible Sac1 degradation to identify its immediate downstream effectors in human cells. Most of Sac1 was degraded in ∼1 h, paralleled by increased PI(4)P and decreased cholesterol in the trans-Golgi network (TGN) during the following hour, and superseded by Golgi fragmentation, impaired glycosylation, and selective degradation of TGN proteins by ∼4 h. The TGN disintegration resulted from its acute deacidification caused by disassembly of the Golgi V-ATPase. Mechanistically, Sac1 mediated TGN membrane composition maintained an assembly promoting conformation of the V 0 a2 subunit. Key phenotypes of acute Sac1 degradation were recapitulated in human differentiated trophoblasts, causing processing defects of chorionic gonadotropin, in line with loss-of-function intolerance of the human SACML1 gene. Collectively, our findings reveal that the assembly of the Golgi V-ATPase is controlled by the TGN membrane via Sac1 fuelled lipid exchange.

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Research works printed but not linked: 93

  1. 10.1152/physrev.00028.2012 · DOI · Paper page
  2. 10.1083/jcb.201312072 · DOI · Paper page
  3. 10.1074/jbc.M111807200 · DOI
  4. 10.3109/10409238.2013.853024 · DOI
  5. 10.1091/mbc.E07-07-0713 · DOI
  6. 10.1016/j.tcb.2010.10.002 · DOI
  7. 10.1016/j.jbc.2024.105757 · DOI
  8. 10.1016/S0092-8674(03)00603-2 · DOI
  9. 10.1016/j.cell.2009.07.052 · DOI
  10. Wakana, Y. et al. The ER cholesterol sensor SCAP promotes CARTS biogenesis at ER–Golgi membrane contact sites. J. Cell Biol. 220, (2020). · DOI
  11. 2023, Lipid exchange at ER–trans-Golgi contact sites governs polarized cargo sorting, J. Cell Biol, 223, e202307051
  12. Moser von Filseck, J. , et al. Phosphatidylserine transport by ORP/Osh proteins is driven by phosphatidylinositol 4-phosphate. Science (80-.). 349, 432 LP – 436 (2015). · DOI
  13. 10.1016/j.cell.2013.09.056 · DOI
  14. 10.15252/embj.201796687 · DOI
  15. 10.7554/eLife.35588 · DOI
  16. 10.1083/jcb.201812021 · DOI
  17. 10.1038/s41467-023-41213-w · DOI
  18. 10.1016/j.cell.2016.06.037 · DOI · Paper page
  19. 10.1091/mbc.E07-12-1290 · DOI
  20. 10.1111/j.1600-0854.2010.01092.x · DOI
  21. 10.1083/jcb.200708109 · DOI
  22. 10.1093/genetics/121.4.659 · DOI
  23. 10.1083/jcb.109.6.2939 · DOI
  24. 10.1016/j.advenzreg.2009.01.006 · DOI
  25. 10.1016/j.cub.2003.09.056 · DOI
  26. 10.1038/s41592-019-0512-x · DOI
  27. Li, S. et al. HiHo-AID2: boosting homozygous knock-in efficiency enables robust generation of human auxin-inducible degron cells. Genome Biol. 25, 58 (2024). · DOI
  28. 10.1038/s41467-021-27838-9 · DOI · Paper page
  29. 10.1002/jcp.21744 · DOI
  30. 10.1021/acschembio.1c00907 · DOI
  31. 10.1038/s41589-019-0308-4 · DOI
  32. 10.1074/jbc.RA117.001327 · DOI
  33. 10.1091/mbc.E17-05-0316 · DOI
  34. 10.7554/eLife.25466 · DOI · Paper page
  35. 10.1074/jbc.M115.662494 · DOI
  36. Nwabuobi, C. et al. hCG: Biological Functions and Clinical Applications. Int. J. Mol. Sci. 18, (2017). · DOI
  37. 10.1002/1873-3468.13552 · DOI
  38. 10.1074/jbc.RA119.012012 · DOI
  39. 10.1038/ng.2007.45 · DOI
  40. 10.1007/s10565-014-9274-5 · DOI
  41. 10.1016/j.bbadis.2008.12.009 · DOI
  42. 10.1093/hmg/ddp148 · DOI
  43. 10.1083/JCB.201908225 · DOI
  44. 10.1091/mbc.E15-08-0599 · DOI
  45. 10.1074/jbc.270.28.17025 · DOI
  46. 10.1128/MCB.25.2.575-589.2005 · DOI
  47. 10.1126/science.1080106 · DOI
  48. 10.1126/science.1207056 · DOI · Paper page
  49. 10.1038/s41467-022-32515-6 · DOI
  50. 10.1083/jcb.202105112 · DOI
  51. 10.1091/mbc.E13-10-0563 · DOI
  52. 10.1074/jbc.RA119.008552 · DOI
  53. 10.1073/pnas.1814818116 · DOI
  54. 10.1371/journal.ppat.1000939 · DOI · Paper page
  55. Mitra, C. , Winkley, S. & Kane, P. M . Human V-ATPase a-subunit isoforms bind specifically to distinct phosphoinositide phospholipids. J. Biol. Chem. 299, 105473 (2023). · DOI
  56. Chu, A. et al. Characterization of a PIP Binding Site in the N-Terminal Domain of V-ATPase a4 and Its Role in Plasma Membrane Association. International Journal of Molecular Sciences vol. 24 (2023). · DOI
  57. 10.1016/j.molcel.2020.09.029 · DOI
  58. 10.1126/science.adp5577 · DOI · Paper page
  59. 10.1038/s41586-022-05164-4 · DOI
  60. 10.15252/embj.2022112677 · DOI
  61. 10.1016/j.cell.2023.09.027 · DOI
  62. 10.1247/csf.17003 · DOI
  63. Wei, Y. et al. Protocol to derive human trophoblast stem cells directly from primed pluripotent stem cells. STAR Protoc. 3, 101638 (2022). · DOI
  64. 10.1139/o59-099 · DOI · Paper page
  65. 10.1038/s42255-023-00769-z · DOI
  66. 10.1038/s41592-019-0593-6 · DOI
  67. 10.15252/embj.201695917 · DOI
  68. 10.1083/jcb.200104073 · DOI
  69. 10.1371/journal.pbio.1002340 · DOI
  70. 10.1038/s41592-019-0582-9 · DOI
  71. 10.1021/pr050300l · DOI
  72. 10.1074/mcp.RA119.001705 · DOI
  73. 10.1038/75556 · DOI · Paper page
  74. 10.1002/pro.4218 · DOI · Paper page
  75. 10.1002/jcc.20945 · DOI · Paper page
  76. 10.1038/nmeth.4067 · DOI
  77. 10.1063/1.445869 · DOI
  78. 10.1063/1.466711 · DOI
  79. 2015, GROMACS: High performance molecular simulations through multi- level parallelism from laptops to supercomputers, SoftwareX, 1–2, 19
  80. 10.1021/ct5010406 · DOI
  81. 10.1080/00268978400101201 · DOI
  82. 10.1103/PhysRevA.31.1695 · DOI
  83. 10.1063/1.328693 · DOI
  84. 10.1021/ct700200b · DOI
  85. 10.1063/1.470117 · DOI
  86. 10.1016/0263-7855(96)00018-5 · DOI · Paper page
  87. 10.25080/Majora-629e541a-00e · DOI
  88. 10.1002/jcc.21787 · DOI
  89. 10.1016/0098-1354(92)80051-A · DOI
  90. Paszke, A. , et al. PyTorch: An Imperative Style, High-Performance Deep Learning Library. ArXiv abs/1912.0, (2019).
  91. 10.48550/arXiv.1803.08375 · DOI
  92. 10.1016/j.cpc.2010.04.018 · DOI
  93. 10.1002/1439-7633(20020703)3:7<604::AID-CBIC604>3.0.CO;2-X · DOI

Metadata

Authors
Zhou, X., van der Stoel, M. M., Kaptan, S., Li, H., Li, S., Hölttä, M., Vihinen, H., Jokitalo, E., Thiele, C., Pietiläinen, O., Morioka, S., Sasaki, J., Sasaki, T., Vattulainen, I., & Ikonen, E.
Affiliations
  • University of Helsinki (FI)
  • University of Bonn (DE)
  • Tokyo Medical and Dental University (JP)
Corresponding author
Ikonen, Elina
Venue
Nature Communications
Publisher
openRxiv
Published
2024-11-05
Volume
16
Issue
1
Pages
7808-7808
ISSN
2041-1723 (ISSN-L)
OpenAlex
W4413376468
Cited by
6
References
2
Citations by year
2026: 5 · 2025: 1
FWCI
2.97
Type
journal article
Language
en
Open access
Locations
  • Nature Communications (publishedVersion, cc-by)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
  • Europe PMC (PubMed Central) (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
  • Työväentutkimus Vuosikirja (submittedVersion)
Funders
  • Japan Agency for Medical Research and Development (24gm1710007, CREST)
  • European Commission (HORIZON2020, 953489)
  • Academy of Finland (332096, 335527, 364185)
  • Lundbeckfonden
  • Jane ja Aatos Erkon Säätiö
  • China Scholarship Council
  • Tokyo Medical and Dental University (JPMXP1323015483)
  • H. Lundbeck A/S
  • Biocenter Finland
  • Helsinki Institute of Life Science, Helsingin Yliopisto
  • Core Research for Evolutional Science and Technology
  • HORIZON EUROPE Marie Sklodowska-Curie Actions (101059424)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Cellular transport and secretion
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › ATP Synthase and ATPases Research
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Biochemistry › Lipid metabolism and biosynthesis
Keywords
Sac1, phosphoinositide phosphatase, trans-Golgi network, cholesterol, Golgi fragmentation, membrane acidification, lipid exchange, trophoblast, auxin-inducible degradation
MeSH terms
Cholesterol, Glycosylation, Golgi Apparatus, HeLa Cells, Humans, Indoleacetic Acids, Membrane Proteins, Phosphoric Monoester Hydrolases, Trophoblasts, Phosphatidylinositol Phosphates, trans-Golgi Network, Vacuolar Proton-Translocating ATPases, HEK293 Cells

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