The DOI matches its Crossref record; 137 of the 137 references it cites were found in a registry or an index.
HIV DNA Integration
Open accessAbstract
Retroviruses are distinguished from other viruses by two characteristic steps in the viral replication cycle. The first is reverse transcription, which results in the production of a double-stranded DNA copy of the viral RNA genome, and the second is integration, which results in covalent attachment of the DNA copy to host cell DNA. The initial catalytic steps of the integration reaction are performed by the virus-encoded integrase (IN) protein. The chemistry of the IN-mediated DNA breaking and joining steps is well worked out, and structures of IN-DNA complexes have now clarified how the overall complex assembles. Methods developed during these studies were adapted for identification of IN inhibitors, which received FDA approval for use in patients in 2007. At the chromosomal level, HIV integration is strongly favored in active transcription units, which may promote efficient viral gene expression after integration. HIV IN binds to the cellular factor LEDGF/p75, which promotes efficient infection and tethers IN to favored target sites. The HIV integration machinery must also interact with many additional host factors during infection, including nuclear trafficking and pore proteins during nuclear entry, histones during initial target capture, and DNA repair proteins during completion of the DNA joining steps. Models for some of the molecular mechanisms involved have been proposed, but important details remain to be clarified.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The cited source says what the claim attributes to it.
In the citing paper
“Integration of reverse transcribed viral DNA into the host cell genome is an essential step during the HIV-1 life cycle 1 .”
From Harnessing the CRISPR/Cas9 system to disrupt latent HIV-1 provirus (2013) · cites this paper as [1]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Initial sequencing and analysis of the human genome
International Human Genome Sequencing Consortium, Whitehead Institute for Biomedical Research, C. F. G. R., Lander, E. S., Linton, L. M., Birren, B., Nusbaum, C., Zody, M. C., Baldwin, J., Devon, K., Dewar, K., et al. (2001) · Nature · doi:10.1038/35057062 · Cited by 24,216
The sequence of the human genome
Venter, J. C., Adams, M. D., Myers, E. W., Li, P. W., Mural, R. J., Sutton, G. G., Smith, H. O., Yandell, M., Evans, C. A., Holt, R. A., et al. (2001) · Science · doi:10.1126/science.1058040 · Cited by 13,909
HIV-1 Dynamics in Vivo: Virion Clearance Rate, Infected Cell Life-Span, and Viral Generation Time
Perelson, A. S., Neumann, A. U., Markowitz, M. H., Leonard, J. M., & Ho, D. D. (1996) · Science · doi:10.1126/science.271.5255.1582 · Cited by 3,533
Viral RNA-dependent DNA Polymerase: RNA-dependent DNA Polymerase in Virions of Rous Sarcoma Virus
TEMIN, H. M., & MIZUTANI, S. (1970) · Nature · doi:10.1038/2261211a0 · Cited by 2,128
Viral RNA-dependent DNA Polymerase: RNA-dependent DNA Polymerase in Virions of RNA Tumour Viruses
BALTIMORE, D. (1970) · Nature · doi:10.1038/2261209a0 · Cited by 2,068
HIV-1 Integration in the Human Genome Favors Active Genes and Local Hotspots
Schröder, A. R. W., Shinn, P., Chen, H., Berry, C., Ecker, J. R., & Bushman, F. (2002) · Cell · doi:10.1016/s0092-8674(02)00864-4 · Cited by 1,832
Self-citationThe Sequence of the Human Genome
Venter, J. C., Smith, H. O., & Adams, M. D. (2015) · Clinical Chemistry · doi:10.1373/clinchem.2014.237016 · Cited by 1,665
Identification of host proteins required for HIV infection through a functional genomic screen
Brass, A. L., Dykxhoorn, D. M., Benita, Y., Yan, N., Engelman, A., Xavier, R. J., Lieberman, J., & Elledge, S. J. (2008) · Science · doi:10.1126/science.1152725 · Cited by 1,449 · cited 2×
“…have been performed to identify genes that when reduced in dosage using small interfering RNA (siRNA), diminish HIV infection, and several of the identified host factors have been mapped to the integration part of the viral replication cycle (Brass et al. 2008; Konig et al. 2008; Zhou et al. 2008).”
Background(2007) · Wiley eBooks · doi:10.1128/9781555817954 · Cited by 1,311
Transcription Start Regions in the Human Genome Are Favored Targets for MLV Integration
Wu, X., Li, Y., Crise, B., & Burgess, S. M. (2003) · Science · doi:10.1126/science.1083413 · Cited by 1,305
Flagged first, then by citations
Research works printed but not linked: 2
- Coffin JM, Hughes SH, Varmus HE. 1997. Retroviruses. Cold Spring Harbor Laboratory Press, Cold Spring Har- bor, NY.
- Varmus HE, Brown PO, Berg DE, Howe MM. 1989. Retrovi- ruses. In Mobile DNA, pp. 53-108. American Society for Microbiology, Washington, DC.
Cited by
Sorted by citations
Items 301–326 of 326
Caractérisation et conservation des mécanismes antiviraux des protéines IFITMs
Appourchaux, R. (2017) · theses.fr (ABES) · doi:10.70675/d001d208z7f71z40f3za8abzbf3a6cd40964
Glushonkov, O. (2018) · theses.fr (ABES) · doi:10.70675/5151759cz8fd1z4b0bz9f09z0f350b30ecf2
Gantner, P. (2018) · theses.fr (ABES) · doi:10.70675/c836a9afz1fd0z4a59z933fz98f5f471f52a
Duchemin, M. (2020) · theses.fr (ABES) · doi:10.70675/f23b1521z398ez4fe3za54aze6b18e252fe2
Impact de stratégies thérapeutiques sur le réservoir viral cellulaire dans l'infection par le VIH-1
Delagreverie, H. M. (2018) · theses.fr (ABES) · doi:10.70675/bbe21e26zf0ccz49d6zb633zc127a9338ff2
Regulation of the Akt/mTORC1 Pathway by HIV Transcriptional Activator Tat in B Cells
Akbay, B. (2021) · theses.fr (ABES) · doi:10.70675/2b579806z11cfz4545zb88az6987a56822bf · Cited by 1
Said, M. A. (2023) · theses.fr (ABES) · doi:10.70675/a9c4a87dz9e77z48d7zbd35z5893bdb5df28
Interactions hôtes/lentivirus et contrôle de l'infection avec des vaccins LentiDNA innovants
Chergui, H. E. (2024) · theses.fr (ABES) · doi:10.70675/53cd7138z7fedz42f7zb5c3zb18ef5a33362
Rôle des 2'-O-méthylations internes du génome ARN du VIH-1 dans la réplication virale
Decombe, A. (2023) · theses.fr (ABES) · doi:10.70675/82535ee7z2ed0z457ezb976za900d3f7241a
Structural Basis of Polypurine Track Strand Displacement by HIV-1 Reverse TranscriptasePreprint
Wen, X. R., Lee, R., Muppalla, S. D., McFadden, W. M., Kirby, K. A., Dick, R. A., & Sarafianos, S. G. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.04.07.717013
XU, H., Wang, X., Ma, L., Vincent, E., Liu, Y.-Z., Doyle‐Meyers, L. A., Rowe, L. A., Xu, E., Krzykwa, C., Veazey, R. S., et al. (2026) · Research Square · doi:10.21203/rs.3.rs-9336128/v1
HIV-2 infection as a comparative lens for functional HIV-1 remission
Arthur, S. E., Atanniba, J., Nartey, P. A., Tay, Y. A., Attoh, D. A., Abana, C. Z.-Y., Bonney, E. Y., & Kyei, G. B. (2026) · Frontiers in Immunology · doi:10.3389/fimmu.2026.1825935
РНК и ДНК вирусы: двухфазный механизм коллективной адаптации и гетерогенностиPreprint
Orlov, S. (2026) · doi:10.24108/preprints-3115469
Bhattacharjee, S., Michalek, K., & Metzner, K. J. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.10.12.758617
Use of Stem Cell Growth and Differentiation Factors (Scdsf) in Central Vertigo
Pisano, G., Spaggiari, P., Pintucci, J. P., Blanco, M., Tribbia, C., Liberati, C., Bonis, T. D., Grappeggia, G., & Biava, P. M. (2026) · Journal of Otolaryngology Advances · doi:10.14302/issn.2379-8572.joa-26-6454
Metadata
- Authors
- Craigie, R., & Bushman, F. D.
- Affiliations
- National Institutes of Health (US)
- University of Pennsylvania (US)
- Venue
- Cold Spring Harbor Perspectives in Medicine
- Publisher
- Cold Spring Harbor Laboratory
- Published
- 2012-05-08
- Volume
- 2
- Issue
- 7
- Pages
- a006890-a006890
- ISSN
- 2157-1422 (ISSN-L)
- PMC
- PMC3385939
- OpenAlex
- W2110488501
- Cited by
- 327
- References
- 137
- Citations by year
- 2026: 10 · 2025: 15 · 2024: 22 · 2023: 14 · 2022: 35 · 2021: 26 · 2020: 19 · 2019: 22 · 2018: 29 · 2017: 28 · 2016: 30 · 2015: 29 · 2014: 22 · 2013: 22 · 2012: 4
- Type
- posted content
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Cold Spring Harbor Perspectives in Medicine (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Institute of Allergy and Infectious Diseases (P01AI090935)
- Topics
- Life Sciences › Immunology and Microbiology › Virology › HIV Research and Treatment
- Health Sciences › Medicine › Infectious Diseases › HIV/AIDS drug development and treatment
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Virus-based gene therapy research
- Keywords
- HIV integration, integrase, retroviral replication, reverse transcription, integrase inhibitors, LEDGF/p75, transcriptionally active chromatin, host factors, nuclear trafficking, histones, DNA repair, HIV gene expression
- MeSH terms
- Cell Nucleus, DNA, Viral, HIV, Humans, Virus Replication, Virus Integration, HIV Integrase, Intercellular Signaling Peptides and Proteins, Reverse Transcription
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review