clDice - a Novel Topology-Preserving Loss Function for Tubular Structure Segmentation
Open accessAbstract
Accurate segmentation of tubular, network-like structures, such as vessels, neurons, or roads, is relevant to many fields of research. For such structures, the topology is their most important characteristic; particularly preserving connectedness: in the case of vascular networks, missing a connected vessel entirely alters the blood-flow dynamics. We introduce a novel similarity measure termed centerlineDice (short clDice), which is calculated on the inter-section of the segmentation masks and their (morphological) skeleta. We theoretically prove that clDice guarantees topology preservation up to homotopy equivalence for binary 2D and 3D segmentation. Extending this, we pro-pose a computationally efficient, differentiable loss function (soft-clDice) for training arbitrary neural segmentation networks. We benchmark the soft-clDice loss on five public datasets, including vessels, roads and neurons (2D and 3D). Training on soft-clDice leads to segmentation with more accurate connectivity information, higher graph similarity, and better volumetric scores.
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We compared our nerve segmentation model with other advanced 3D image segmentation networks, training each on the same training dataset until full convergence.
“We compared our nerve segmentation model with other advanced 3D image segmentation networks50 (Supplementary Table 1): VNet51, Attention U-Net52, nnFormer53, UNETR54, SwinUNETR55, nnU-Net56 and nnUNetRes56. Each network was trained on the same training dataset until full convergence, defined as no decrease in the training loss for ten consecutive epochs.”
From A deep-learning framework reveals whole-body perturbations at cell level (2026) · cites this paper as [50]
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“As baselines, we use the same architectures trained using soft-Dice [27, 45].”
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BackgroundSelf-citationA Topological Loss Function for Deep-Learning Based Image Segmentation Using Persistent Homology
Clough, J. R., Byrne, N., Öksüz, İ., Zimmer, V. A., Schnabel, J. A., & King, A. P. (2020) · IEEE Transactions on Pattern Analysis and Machine Intelligence · doi:10.1109/tpami.2020.3013679 · Cited by 281 · cited 1× · see citing works
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“In stark contrast to previous works, where segmentation and centerline prediction has been learned jointly as multi-task learning [50, 47], we are not interested in learning the centerline.”
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A Higher-Order CRF Model for Road Network Extraction
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BackgroundTopology-Preserving Deep Image SegmentationPreprint
Hu, X., Li, F., Samaras, D., & Chen, C. (2019) · arXiv (Cornell University) · doi:10.48550/arxiv.1906.05404 · Cited by 164 · cited 5× · see citing works
“proposed the first continuous-valued loss function based on the Betti number and persistent homology [17].”
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MethodON TOPOLOGY PRESERVATION IN 2-D AND 3-D THINNING
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“Additionally, we provide an elaborate explanation of clDice topological properties, using concepts of applied digital topology in the theory section of the Supplementary material [24, 23].”
MethodWhole-Brain Vasculature Reconstruction at the Single Capillary Level
Giovanna, A. P. D., Tibo, A., Silvestri, L., Müllenbroich, M. C., Costantini, I., Mascaro, A. L. A., Sacconi, L., Frasconi, P., & Pavone, F. S. (2018) · Scientific Reports · doi:10.1038/s41598-018-30533-3 · Cited by 129 · cited 1× · see citing works
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BackgroundOn Topology Preservation in 3D Thinning
Ma, C. M. (1994) · CVGIP Image Understanding · doi:10.1006/ciun.1994.1023 · Cited by 122 · cited 1× · see citing works
“For binary geometries, various algorithms based on thinning and medial surfaces have been proven to be topologypreserving according to varying definitions of topology [23, 25, 26, 35].”
Probabilistic image segmentation with closedness constraints
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“For non-binary geometries, existing methods applied topology and connectivity constraints onto variational and Markov random field-based methods: tree shape priors for vessel segmentation [44], graph representation priors to natural images [2], higher-order cliques which connect superpixels [53] and adversarial learni…”
MethodA skeletonization algorithm by maxima tracking on Euclidean distance transform
Shih, F. Y., & Pu, C. C. (1995) · Pattern Recognition · doi:10.1016/0031-3203(94)00104-t · Cited by 105 · cited 1× · see citing works
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MethodLearning tree-structured representation for 3D coronary artery segmentation
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MethodTopology cuts: A novel min-cut/max-flow algorithm for topology preserving segmentation in N–D images
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MethodDeep vessel tracking: A generalized probabilistic approach via deep learning
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“tures, are 1) overlap based measures such as Dice, precision, recall, and Jaccard index; and 2) volumetric distance measures such as the Hausdorff and Mahalanobis distance [21, 40, 36, 16].”
MethodSelf-citationGlobal connectivity potentials for random field models
Nowozin, S., & Lampert, C. H. (2009) · IEEE Computer Society Conference on Computer Vision and Pattern Recognition/Proceedings - IEEE Computer Society Conference on Computer Vision and Pattern Recognition/Proceedings · doi:10.1109/cvprw.2009.5206567 · Cited by 73 · see citing works
Tissue metabolism driven arterial tree generation
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“In 3D, a synthetic vessel dataset with an added Gaussian noise term [39] and the Vessap dataset of multi-channel volumetric scans of brain vessels is used [48, 34].”
MethodJin, D., Xu, Z., Harrison, A. P., George, K., & Mollura, D. J. (2017) · Lecture notes in computer science · doi:10.1007/978-3-319-67389-9_17 · Cited by 66 · cited 1× · see citing works
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MethodVascular Segmentation in TOF MRA Images of the Brain Using a Deep Convolutional Neural Network
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“tures, are 1) overlap based measures such as Dice, precision, recall, and Jaccard index; and 2) volumetric distance measures such as the Hausdorff and Mahalanobis distance [21, 40, 36, 16].”
MethodShape-Aware Complementary-Task Learning for Multi-organ Segmentation
Navarro, F., Shit, S., Ezhov, I., Paetzold, J. C., Gafita, A., Peeken, J. C., Combs, S. E., & Menze, B. H. (2019) · Lecture notes in computer science · doi:10.1007/978-3-030-32692-0_71 · Cited by 66 · see citing works
Self-citationUnsupervised Microvascular Image Segmentation Using an Active Contours Mimicking Neural Network
Gur, S., Wolf, L., Golgher, L., & Blinder, P. (2019) · IEEE/CVF International Conference on Computer Vision (ICCV) · doi:10.1109/iccv.2019.01082 · Cited by 61 · cited 1× · see citing works
“For non-binary geometries, existing methods applied topology and connectivity constraints onto variational and Markov random field-based methods: tree shape priors for vessel segmentation [44], graph representation priors to natural images [2], higher-order cliques which connect superpixels [53] and adversarial learni…”
MethodA 3-subiteration 3D thinning algorithm for extracting medial surfaces
Palágyi, K. (2002) · Pattern Recognition Letters · doi:10.1016/s0167-8655(01)00142-8 · Cited by 54 · cited 2× · see citing works
“Importantly, thinning using morphological operations (skeletonization) on curvilinear structures can be topologypreserving [35].”
BackgroundReconstructing Curvilinear Networks Using Path Classifiers and Integer Programming
Türetken, E., Benmansour, F., Andres, B., Głowacki, P., Pfister, H., & Fua, P. (2016) · IEEE Transactions on Pattern Analysis and Machine Intelligence · doi:10.1109/tpami.2016.2519025 · Cited by 54 · see citing works
Active Contours Under Topology Control—Genus Preserving Level Sets
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Global connectivity potentials for random field models
Nowozin, S., & Lampert, C. H. (2009) · IEEE Computer Society Conference on Computer Vision and Pattern Recognition/Proceedings - IEEE Computer Society Conference on Computer Vision and Pattern Recognition/Proceedings · doi:10.1109/cvpr.2009.5206567 · Cited by 53 · see citing works
A Deep Learning Design for Improving Topology Coherence in Blood Vessel Segmentation
Araújo, R. J., Cardoso, J. S., & Oliveira, H. P. (2019) · Lecture notes in computer science · doi:10.1007/978-3-030-32239-7_11 · Cited by 50 · cited 1× · see citing works
“For non-binary geometries, existing methods applied topology and connectivity constraints onto variational and Markov random field-based methods: tree shape priors for vessel segmentation [44], graph representation priors to natural images [2], higher-order cliques which connect superpixels [53] and adversarial learni…”
MethodSkeletonization using an extended Euclidean distance transform
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MethodTree Shape Priors with Connectivity Constraints Using Convex Relaxation on General Graphs
Stühmer, J., Schröder, P., & Cremers, D. (2013) · IEEE International Conference on Computer Vision (ICCV) · doi:10.1109/iccv.2013.290 · Cited by 40 · cited 1× · see citing works
“For non-binary geometries, existing methods applied topology and connectivity constraints onto variational and Markov random field-based methods: tree shape priors for vessel segmentation [44], graph representation priors to natural images [2], higher-order cliques which connect superpixels [53] and adversarial learni…”
MethodJoint Segmentation and Path Classification of Curvilinear Structures
Mosinska, A., Koziński, M., & Fua, P. (2019) · IEEE Transactions on Pattern Analysis and Machine Intelligence · doi:10.1109/tpami.2019.2921327 · Cited by 38 · cited 1× · see citing works
“trained networks which perform segmentation and path classification simultaneously [30].”
Generalized Connectivity Constraints for Spatio-temporal 3D Reconstruction
Oswald, M. R., Stühmer, J., & Cremers, D. (2014) · Lecture notes in computer science · doi:10.1007/978-3-319-10593-2_3 · Cited by 32 · cited 1× · see citing works
“For non-binary geometries, existing methods applied topology and connectivity constraints onto variational and Markov random field-based methods: tree shape priors for vessel segmentation [44], graph representation priors to natural images [2], higher-order cliques which connect superpixels [53] and adversarial learni…”
MethodPromoting Connectivity of Network-Like Structures by Enforcing Region Separation
Öner, D., Koziński, M., Citraro, L., Dadap, N. C., Konings, A. G., & Fua, P. (2021) · IEEE Transactions on Pattern Analysis and Machine Intelligence · doi:10.1109/tpami.2021.3074366 · Cited by 28 · see citing works
Image-Conditioned Graph Generation for Road Network ExtractionPreprint
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“SMD captures a Wasserstein distance between two graphs.”
BackgroundMethodAutomated analysis of whole brain vasculature using machine learningPreprint
Todorov, M. I., Paetzold, J. C., Schoppe, O., Tetteh, G., Efremov, V., Völgyi, K., Duering, M., Dichgans, M., Piraud, M., Menze, B. H., et al. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/613257 · Cited by 16 · cited 4× · see citing works
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Uslu, F., & Bharath, A. A. (2018) · Lecture notes in computer science · doi:10.1007/978-3-030-00934-2_11 · Cited by 14 · cited 1× · see citing works
“In stark contrast to previous works, where segmentation and centerline prediction has been learned jointly as multi-task learning [50, 47], we are not interested in learning the centerline.”
ResultEfficient Algorithms for Moral Lineage Tracing
Rempfler, M., Lange, J.-H., Jug, F., Blasse, C., Myers, E. W., Menze, B. H., & Andres, B. (2017) · IEEE/CVF International Conference on Computer Vision (ICCV) · doi:10.1109/iccv.2017.503 · Cited by 12 · see citing works
Self-citationTopoAL: An Adversarial Learning Approach for Topology-Aware Road Segmentation
Vasu, S., Koziński, M., Citraro, L., & Fua, P. (2020) · Lecture notes in computer science · doi:10.1007/978-3-030-58583-9_14 · Cited by 12 · see citing works
A Distance-Based Loss for Smooth and Continuous Skin Layer Segmentation in Optoacoustic Images
Gerl, S., Paetzold, J. C., He, H., Ezhov, I., Shit, S., Kofler, F., Bayat, A., Tetteh, G., Ntziachristos, V., & Menze, B. H. (2020) · Lecture notes in computer science · doi:10.1007/978-3-030-59725-2_30 · Cited by 11 · see citing works
Self-citationPaetzold, J. C., Schoppe, O., Al-Maskari, R., Tetteh, G., Efremov, V., Todorov, M. I., Cai, R., Mai, H., Rong, Z., Ertuerk, A., et al. (2019) · Cited by 10 · see citing works
Self-citationTowards Reliable Evaluation of Algorithms for Road Network Reconstruction from Aerial Images
Citraro, L., Koziński, M., & Fua, P. (2020) · Lecture notes in computer science · doi:10.1007/978-3-030-58604-1_42 · Cited by 9 · cited 2× · see citing works
“Additionally we compute the F1 score of junction-based metric [7].”
BackgroundMethod
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3 of the 64 references couldn’t be matched to a known paper.
Research works printed but not linked: 1
- [40][40] Azriel Rosenfeld. Digital topology. The American Mathematical Monthly , 86(8):621-630, 1979. 11 -
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Human treelike tubular structure segmentation: A comprehensive review and future perspectives
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Geometry-Aware Neural Solver for Fast Bayesian Calibration of Brain Tumor Models
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Simulating the Cellular Context in Synthetic Datasets for Cryo-Electron Tomography
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“Authors in [54] proposes clDice (centerline Dice) for tube-like structures in 2D images, here we extend this metric to 3D for processing filament-like structures.”
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vesselFM: A Foundation Model for Universal 3D Blood Vessel Segmentation
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“Masks contained in M syn encompass a broad range of realistic vascular patterns, capturing variations in blood vessel scale, density, curvature, and tortuosity.”
Self-citationAutomatic segmentation of mandibular canal using transformer based neural networks
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CoordConv-Unet: Investigating CoordConv for Organ Segmentation
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Deep learning based coronary vessels segmentation in X-ray angiography using temporal information
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Whole mandibular canal segmentation using transformed dental CBCT volume in Frenet frame
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“To further maintain the connectivity of the mandibular canal, we use clDice loss [22] to train the mandibular canal segmentation network.”
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TopoTxR: A topology-guided deep convolutional network for breast parenchyma learning on DCE-MRIs
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Supervised segmentation with domain adaptation for small sampled orbital CT images
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Automatic segmentation and quantification of the optic nerve on MRI using a 3D U-Net
van Elst, S., de Bloeme, C. M., Noteboom, S., de Jong, M. C., Moll, A. C., Göricke, S. L., de Graaf, P., & Caan, M. W. A. (2023) · Journal of medical imaging · doi:10.1117/1.jmi.10.3.034501 · Cited by 12 · see citing works
“, continuous values between 0 and 1)(41) or adapting the loss function specifically to tubular structure segmentation, such as using a centerline Dice loss.(40) These approaches could enhance the segmentation accuracy and improve its quantitative evaluation.”
MethodCardiovascular medical image and analysis based on 3D vision: A comprehensive survey
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Learning Euler's Elastica Model for Medical Image SegmentationPreprint
Chen, X., Luo, X., Zhao, Y., Zhang, S., Wang, G., & Zheng, Y. (2020) · arXiv (Cornell University) · doi:10.48550/arxiv.2011.00526 · Cited by 11 · see citing works
Image Segmentation of Retinal Blood Vessels Based on Dual-Attention Multiscale Feature Fusion
Gao, J., Huang, Q., Gao, Z., & Chen, S. (2022) · Computational and Mathematical Methods in Medicine · doi:10.1155/2022/8111883 · Cited by 10 · see citing works
“In [24], a computationally e ffi cient, di ff erentiable loss function (soft-clDice) was proposed for training arbitrary neural segmentation networks.”
RetractedSegmentation of cardiac tissues and organs for CCTA images based on a deep learning model
Cai, S., Lu, Y., Li, B., Gao, Q., Xu, L., Hu, X., & Zhang, L. J. (2023) · Frontiers in Physics · doi:10.3389/fphy.2023.1266500 · Cited by 10 · see citing works
E2MISeg: Enhancing edge-aware 3D medical image segmentation via feature progressive co-aggregation
Jiang, L., Xu, W., Zheng, X., Zhang, Z., Jiang, Z., Jiang, C. W., Chen, Y., Ji, Y., Liu, S., Liu, J.-W., et al. (2025) · Expert Systems with Applications · doi:10.1016/j.eswa.2025.128861 · Cited by 8 · see citing works
An analysis of the influence of transfer learning when measuring the tortuosity of blood vessels
da Silva, M. V., Ouellette, J., Lacoste, B., & Comin, C. H. (2022) · Computer Methods and Programs in Biomedicine · doi:10.1016/j.cmpb.2022.107021 · Cited by 8 · see citing works
“Despite the development of additional performance metrics such as clDice [38], the influence of segmentation on downstream tasks, such as blood vessel morphometry, has rarely been addressed.”
GVC-Net: Global Vascular Context Network for Cerebrovascular Segmentation Using Sparse Labels
Li, M., Li, S., Han, Y., & Zhang, T. (2022) · IRBM · doi:10.1016/j.irbm.2022.05.001 · Cited by 8 · see citing works
TSNet: Vessel segmentation with sequential frame temporal information in coronary angiography
Yu, H., Gao, H., Li, G., Qin, Z., Jia, D., Wang, G., & Wang, S. (2025) · Computerized Medical Imaging and Graphics · doi:10.1016/j.compmedimag.2025.102540 · Cited by 6 · see citing works
Taming Connectedness in Machine-Learning-Based Topology Optimization with Connectivity Graphs
Behzadi, M. M., Chen, J., & Ilieş, H. T. (2023) · Computer-Aided Design · doi:10.1016/j.cad.2023.103634 · Cited by 5 · see citing works
“Similar modifications to loss functions, incorporating topology-aware terms, have been explored in other domains, as demonstrated in [16].”
Li, J., Huang, Y., Ye, X., & Yang, H. (2025) · Engineering Applications of Artificial Intelligence · doi:10.1016/j.engappai.2025.110045 · Cited by 5 · see citing works
Yun, Z., Xu, Q., Wang, G., Jin, S., Lin, G., Feng, Q., & Yuan, J. (2022) · Computer Methods and Programs in Biomedicine · doi:10.1016/j.cmpb.2022.106631 · Cited by 5 · see citing works
Han, T., Xiong, J., Lin, T. S., An, T., Wang, C., Zhu, J., Li, Z., Lu, L., Zhang, Y., & Teng, G. (2024) · EngMedicine · doi:10.1016/j.engmed.2024.100004 · Cited by 4 · see citing works
Xiong, J., Lyu, P., Fang, W., Li, X., Wang, C., & Zhu, J. (2023) · International Conference on Control, Robotics and Intelligent System (CCRIS) · doi:10.1145/3622896.3622913 · Cited by 4 · see citing works
“proposed the use of cldice loss [14] to supervise the network and effectively preserve the topological nature of tubular structure segmentation.”
A shape-supervised feature fusion U-Net for tubular structure segmentation
Yue, J., Jin, S., Wang, S., Zeng, J., Shan, S., Liu, B., Jiang, N., & Zhou, F. (2024) · Computers & Electrical Engineering · doi:10.1016/j.compeleceng.2024.109522 · Cited by 4 · see citing works
Jenssen, H. B., Nainamalai, V., Pelanis, E., Kumar, R. P., Abildgaard, A., Kolrud, F. K., Edwin, B., Jiang, J., Vettukattil, J. J., Elle, O. J., et al. (2025) · Biomedical Signal Processing and Control · doi:10.1016/j.bspc.2025.107822 · Cited by 4 · see citing works
Boundary-aware dynamic re-weighting for semi-supervised medial image segmentation
Jiang, W., Li, J., Li, Y., Wei, X., Huang, J., Quellec, G., Si, W., & Ou, C. (2025) · Expert Systems with Applications · doi:10.1016/j.eswa.2025.128175 · Cited by 4 · see citing works
A deep-learning framework reveals whole-body perturbations at cell level
Kaltenecker, D., Horvath, I., Al-Maskari, R., Chen, Y., Kolabas, Z. I., Hoeher, L., Todorov, M., Minde, D.-P., Kapoor, S., Turhan, S. G., et al. (2026) · Nature · doi:10.1038/s41586-026-10535-2 · Cited by 5 · see citing works
Self-citationHuang, Z., Wang, S., Alley, R. B., & Parizek, B. R. (2025) · Remote Sensing of Environment · doi:10.1016/j.rse.2025.114964 · Cited by 3 · see citing works
Tractable large-scale deep reinforcement learning
Sarang, N., & Poullis, C. (2023) · Computer Vision and Image Understanding · doi:10.1016/j.cviu.2023.103689 · Cited by 3 · see citing works
Meta-Tubular-Net: A Robust Topology-Aware Re-Weighting Network for Retinal Vessel Segmentation
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coDice: connectivity-preserving dice loss for 2D/3D tubular structure segmentation
Dong, J., Lv, Y., Bai, X., Tian, M., Zhang, C., Zhuang, X., Jernberg, T., & Wang, C. (2025) · SPIE Medical Imaging: Image Processing · doi:10.1117/12.3047030 · Cited by 2 · see citing works
“Standard 2D and 3D U-Nets are used as the backbone networks, 12,13 and these networks are trained from scratch every time using softDice, 10,14 clDice 9 or coDice.”
Chierici, A. P., Guzzi, L., Goffart, S., Kamoun, N., Gargiulo, M., Chevallier, P., Iannelli, A., Anty, R., Delingette, H., Lareyre, F., et al. (2025) · Cureus · doi:10.7759/cureus.86072 · Cited by 2 · see citing works
“Centerline dice score (clDice): Evaluates overlap for tubular structures, focusing on segmentation masks and morphological skeletons [26].”
Skea-Topo: A skeleton-aware loss function for topologically accurate boundary segmentation
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DPANet: curve-like structure segmentation based on dual-path attention network
Song, P., Zhang, H., Junfeng, 景. J., Li, P., & Pan, Q. (2025) · Expert Systems with Applications · doi:10.1016/j.eswa.2025.129030 · Cited by 2 · see citing works
UCAN: U-shaped context aggregation network for thin crack segmentation under topological constraints
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Center-Guided and Connectivity-Preserving Network for Grain Size Measurement
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Hepatic artery segmentation with 3D convolutional neural networks
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“…and precision have been adapted so that Centerline Precision = TP predSkel TP predSkel + FP predSkel (1) and Centerline Sensitivity = TP refSkel TP refSkel + FN (2) are defined such that the computations are not done voxelwise but with skeletonized vessel masks as proposed by Shit et al. (2021).”
ExpertSegmentation: Segmentation for microscopy with domain-informed targets via custom loss
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A$$\nu $$-Net: Automatic Detection and Segmentation of Aneurysm
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Sam-Octa: Prompting Segment-Anything for Octa Image SegmentationPreprint
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rNCA: Self-Repairing Segmentation Masks
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Topological Regularization for Dense Prediction
Fu, D., & Nelson, B. J. (2022) · International Conference on Machine Learning and Applications · doi:10.1109/icmla55696.2022.00014
“There has been a recent broad effort to develop persistent homology-based losses and regularization terms in a variety of contexts, including the development of applicationspecific losses [26], [27], [28], [29] as well as general implementations and theory to make this tool increasingly available [6], [7], [8], [9], […”
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SAM-OCTA: Prompting Segment-Anything for OCTA Image SegmentationPreprint
Xinrunchen, X., Ning, H., Li, S., & Shen, M. (2024) · SSRN Electronic Journal · doi:10.2139/ssrn.4844681
Intelligent segmentation of pelvic lymph nodes and accessory accompanying pelvic artery
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Deep leaning-based interactive segmentation of three-dimensional blood vessel images
Li, Y., Zhang, Q., Zhou, H., An, Y., Li, X., Li, X., Zhou, H., & Li, A. (2025) · Biomedical Signal Processing and Control · doi:10.1016/j.bspc.2025.107507
A novel multiscale 3D segmentation network based on vascular skeleton assistance
Wang, Y. M., Zhou, S., Xinyang, S., Chen, T., & Zhang, J. (2025) · International Conference on Graphics and Image Processing (ICGIP) · doi:10.1117/12.3057741
Centerline dice metric implementation is not streamlined
Podobnik, G., & Vrtovec, T. (2025) · SPIE Medical Imaging: Image Processing · doi:10.1117/12.3047456
“6,10 The authors of clDice 4 have, concurrently with their paper, released its open-source Python-based implementation, which resorts to volumetric-based skeletonization.”
- Authors
- Shit, S., Paetzold, J. C., Sekuboyina, A., Ezhov, I., Unger, A., Zhylka, A., Pluim, J. P. W., Bauer, U., & Menze, B. H.
- Affiliations
- Technical University of Munich (DE)
- Eindhoven University of Technology (NL)
- ORCID
- Venue
- 2021 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR)
- Publisher
- IEEE
- Published
- 2021-06
- Pages
- 16555-16564
- ISSN
- 1063-6919 (ISSN-L)
- OpenAlex
- W3010789210
- Cited by
- 60
- References
- 64
- Citations by year
- 2025: 20 · 2024: 9 · 2023: 15 · 2022: 9 · 2021: 6 · 2020: 1
- FWCI
- 3.19
- Type
- conference paper
- Language
- en
- Open access
- green
- arxiv.org
- Licence
- Locations
- IEEE Computer Society Conference on Computer Vision and Pattern Recognition/Proceedings - IEEE Computer Society Conference on Computer Vision and Pattern Recognition/Proceedings (publishedVersion)
- arXiv (Cornell University) (submittedVersion)
- TU/e Research Portal (submittedVersion, other-oa)
- arXiv (Cornell University)
- Topics
- Physical Sciences › Computer Science › Computer Vision and Pattern Recognition › Medical Image Segmentation Techniques
- Physical Sciences › Computer Science › Computer Vision and Pattern Recognition › Advanced Neural Network Applications
- Health Sciences › Medicine › Radiology, Nuclear Medicine and Imaging › Retinal Imaging and Analysis
- Keywords
- topology preservation, tubular structure segmentation, skeletonization, homotopy equivalence, differentiable loss function, vessel segmentation, neuron segmentation, road network segmentation, graph similarity, connectedness
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