bold : The Barcode of Life Data System (http://www.barcodinglife.org)

Basic local alignment search tool

Altschul, S. F., Gish, W., Miller, W., Myers, E. W., & Lipman, D. J. (1990) · Journal of Molecular Biology · doi:10.1006/jmbi.1990.9999 · Cited by 98,669 · see citing works

The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Saitou, N., & Nei, M. (1987) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a040454 · Cited by 59,962 · see citing works

Biological identifications through DNA barcodes

Hebert, P. D. N., Cywinska, A., Ball, S. L., & deWaard, J. R. (2003) · Proceedings of the Royal Society of London. Series B: Biological Sciences · doi:10.1098/rspb.2002.2218 · Cited by 13,376 · see citing works

Base-Calling of Automated Sequencer Traces Using Phred. I. Accuracy AssessmentPreprint

Ewing, B., Hillier, L., Wendl, M. C., & Green, P. (1998) · Genome Research · doi:10.1101/gr.8.3.175 · Cited by 6,993 · see citing works

Profile hidden Markov models

Eddy, S. R. (1998) · Bioinformatics · doi:10.1093/bioinformatics/14.9.755 · Cited by 5,515 · see citing works

Base-Calling of Automated Sequencer Traces Using <i>Phred.</i> II. Error Probabilities

Ewing, B., & Green, P. (1998) · Genome Research · doi:10.1101/gr.8.3.186 · Cited by 5,439 · see citing works

Barcoding animal life: cytochrome <i>c</i> oxidase subunit 1 divergences among closely related species

Hebert, P. D. N., Ratnasingham, S., & de Waard, J. R. (2003) · Proceedings of the Royal Society of London. Series B: Biological Sciences · doi:10.1098/rsbl.2003.0025 · Cited by 4,466 · see citing works

Environmental genome shotgun sequencing of the sargasso sea

Venter, J. C., Remington, K., Heidelberg, J. F., Halpern, A. L., Rusch, D., Eisen, J. A., Wu, D., Paulsen, I., Nelson, K. E., Nelson, W., et al. (2004) · Science · doi:10.1126/science.1093857 · Cited by 4,376 · see citing works

DNA barcoding Australia's fish species

Ward, R. D., Zemlak, T., Innes, B. H., Last, P. R., & Hebert, P. D. N. (2005) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2005.1716 · Cited by 4,357 · see citing works

Identification of Birds through DNA Barcodes

Hebert, P., Stoeckle, M., Zemlak, T., & Francis, C. (2004) · PLoS Biology · doi:10.1371/journal.pbio.0020312 · Cited by 2,759 · see citing works

DNA barcodes distinguish species of tropical Lepidoptera

Hajibabaei, M., Janzen, D. H., Burns, J. M., Hallwachs, W., & Hebert, P. D. N. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0510466103 · Cited by 1,440 · see citing works

Metagenomics: DNA sequencing of environmental samples

Green, S., & Rubin, E. M. (2005) · Nature Reviews Genetics · doi:10.1038/nrg1709 · Cited by 634 · see citing works

DNA barcodes reveal cryptic host-specificity within the presumed polyphagous members of a genus of parasitoid flies (Diptera: Tachinidae)

Smith, M. A., Woodley, N. E., Janzen, D. H., Hallwachs, W., & Hebert, P. D. N. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0511318103 · Cited by 584 · see citing works

Towards writing the encyclopaedia of life: an introduction to DNA barcoding

Savolainen, V., Cowan, R. S., Vogler, A. P., et al. (2005) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2005.1730 · Cited by 569 · see citing works

Critical factors for assembling a high volume of DNA barcodes

Hajibabaei, M., deWaard, J. R., Ivanova, N. V., Ratnasingham, S., Dooh, R. T., Kirk, S. L., Mackie, P. M., & Hebert, P. D. N. (2005) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2005.1727 · Cited by 539 · see citing works

DNA barcoding for effective biodiversity assessment of a hyperdiverse arthropod group: the ants of Madagascar

Smith, M. A., Fisher, B. L., & Hebert, P. D. N. (2005) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2005.1714 · Cited by 476 · see citing works

QuickTree: building huge Neighbour-Joining trees of protein sequences

Howe, K., Bateman, A. G., & Durbin, R. M. (2002) · Bioinformatics · doi:10.1093/bioinformatics/18.11.1546 · Cited by 302 · see citing works

Microfabricated bioprocessor for integrated nanoliter-scale Sanger DNA sequencing

Blazej, R. G., Kumaresan, P., & Mathies, R. A. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0602476103 · Cited by 277 · see citing works

IMPROVING INVENTORY EFFICIENCY: A CASE STUDY OF LEAF-LITTER ANT DIVERSITY IN MADAGASCAR

Fisher, B. L. (1999) · Ecological Applications · doi:10.1890/1051-0761(1999)009[0714:iieacs]2.0.co;2 · Cited by 195 · see citing works

Estimating diversity of Indo-Pacific coral reef stomatopods through DNA barcoding of stomatopod larvae

Barber, P. H., & Boyce, S. L. (2006) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2006.3540 · Cited by 145 · see citing works

Having a BLAST with bioinformatics (and avoiding BLASTphemy)

Pertsemlidis, A., & Fondon, J. W. (2001) · Genome biology · doi:10.1186/gb-2001-2-10-reviews2002 · Cited by 137 · see citing works

Will DNA Bar Codes Breathe Life Into Classification?

Marshall, E. (2005) · Science · doi:10.1126/science.307.5712.1037 · Cited by 116 · see citing works

Setting up tropical biodiversity for conservation through non‐damaging use: participation by parataxonomists

Janzen, D. H. (2004) · Journal of Applied Ecology · doi:10.1111/j.1365-2664.2004.00879.x · Cited by 101 · see citing works

Recrafting the neighbor-joining method

Mailund, T., Brodal, G. S., Fagerberg, R., et al. (2006) · BMC Bioinformatics · doi:10.1186/1471-2105-7-29 · Cited by 60 · see citing works

A new species of Plusia (Lepidoptera: Noctuidae) from North America

Handfield, D., & Handfield, L. (2006) · The Canadian Entomologist · doi:10.4039/n06-041 · Cited by 15 · see citing works

Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass—Sequence Relationships with an Innovative Metabarcoding Protocol

Elbrecht, V., & Leese, F. (2015) · PLOS ONE · doi:10.1371/journal.pone.0130324 · Cited by 765 · see citing works

Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding

Ji, Y., Ashton, L., Pedley, S. M., Edwards, D. P., Tang, Y., Nakamura, A., Kitching, R., Dolman, P. M., Woodcock, P., Edwards, F. A., et al. (2013) · Ecology Letters · doi:10.1111/ele.12162 · Cited by 662 · see citing works

Environmental barcoding: A next-generation sequencing approach for biomonitoring applications using river benthos

Hajibabaei, M., Shokralla, S., Zhou, X., Singer, G. A. C., & Baird, D. J. (2011) · PLoS ONE · doi:10.1371/journal.pone.0017497 · Cited by 584 · see citing works

Environmental metabarcodes for insects: <i>in silico</i><scp>PCR</scp> reveals potential for taxonomic bias

Clarke, L. J., Soubrier, J., Weyrich, L. S., & Cooper, A. (2014) · Molecular Ecology Resources · doi:10.1111/1755-0998.12265 · Cited by 351 · see citing works

Metabarcoding vs. morphological identification to assess diatom diversity in environmental studies

Zimmermann, J., Glöckner, G., Jahn, R., Enke, N., & Gemeinholzer, B. (2015) · Molecular Ecology Resources · doi:10.1111/1755-0998.12336 · Cited by 317 · see citing works

Towards a comprehensive barcode library for arctic life—Ephemeroptera, Plecoptera, and Trichoptera of Churchill, Manitoba, Canada

Zhou, X., Adamowicz, S. J., Jacobus, L. M., DeWalt, R. E., & Hebert, P. D. (2009) · Frontiers in Zoology · doi:10.1186/1742-9994-6-30 · Cited by 153 · see citing works

Ephemeroptera, Plecoptera, and Trichoptera fauna of Churchill (Manitoba, Canada): insights into biodiversity patterns from DNA barcoding

Zhou, X., Jacobus, L. M., DeWalt, R. E., Adamowicz, S. J., & Hebert, P. D. N. (2010) · Journal of the North American Benthological Society · doi:10.1899/09-121.1 · Cited by 126 · see citing works

Bioinformatics opportunities for identification and study of medicinal plants

Sharma, V., & Sarkar, I. N. (2013) · Briefings in Bioinformatics · doi:10.1093/bib/bbs021 · Cited by 121 · see citing works

First record of Anopheles stephensi in Sri Lanka: a potential challenge for prevention of malaria reintroduction

Gayan Dharmasiri, A. G., Perera, A. Y., Harishchandra, J., Herath, H., Aravindan, K., Jayasooriya, H. T. R., Ranawaka, G. R., & Hewavitharane, M. (2017) · Malaria Journal · doi:10.1186/s12936-017-1977-7 · Cited by 90 · see citing works

Cryptic biodiversity in streams: a comparison of macroinvertebrate communities based on morphological and DNA barcode identifications

Jackson, J. K., Battle, J. M., White, B. P., Pilgrim, E. M., Stein, E. D., Miller, P. E., & Sweeney, B. W. (2014) · Freshwater Science · doi:10.1086/675225 · Cited by 91 · see citing works

Soundscapes and deep learning enable tracking biodiversity recovery in tropical forests

Müller, J., Mitesser, O., Schaefer, H. M., Seibold, S., Busse, A., Kriegel, P., Rabl, D., Gelis, R., Arteaga, A., Freile, J., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-41693-w · Cited by 89 · see citing works

Presencia de Aedes (Stegomyia) aegypti (Linnaeus, 1762) y su infección natural con el virus del dengue en alturas no registradas para Colombia

Ruiz-López, F., González-Mazo, A., Vélez-Mira, A., Gómez, G. F., Zuleta, L., Uribe, S., & Vélez-Bernal, I. D. (2016) · Biomédica · doi:10.7705/biomedica.v36i2.3301 · Cited by 80 · see citing works

Protocols for dry <scp>DNA</scp> storage and shipment at room temperature

Ivanova, N. V., & Kuzmina, M. L. (2013) · Molecular Ecology Resources · doi:10.1111/1755-0998.12134 · Cited by 72 · see citing works

Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period

Maixner, F., Sarhan, M. S., Huang, K. D., Tett, A., Schoenafinger, A., Zingale, S., Blanco-Míguez, A., Manghi, P., Cemper-Kiesslich, J., Rosendahl, W., et al. (2021) · Current Biology · doi:10.1016/j.cub.2021.09.031 · Cited by 62 · see citing works

First report of an exophilic Anopheles arabiensis population in Bissau City, Guinea-Bissau: recent introduction or sampling bias?

Gordicho, V., Vicente, J. L., Sousa, C. A., Caputo, B., Pombi, M., Dinis, J., Seixas, G., Palsson, K., Weetman, D., Rodrigues, A., et al. (2014) · Malaria Journal · doi:10.1186/1475-2875-13-423 · Cited by 29 · see citing works

The heaviest bony fish in the world: A 2744‐kg giant sunfish <i>Mola alexandrini</i> (Ranzani, 1839) from the North Atlantic

Gomes‐Pereira, J. N., Pham, C. K., Miodonski, J., Santos, M. A. R., Dionísio, G., Catarino, D., Nyegaard, M., Sawai, E., Carreira, G. P., & Afonso, P. (2023) · Journal of Fish Biology · doi:10.1111/jfb.15244 · Cited by 8 · see citing works

Barcode Technology: Advantages for Libraries

Naik, N. R., & Rao, M. A. (2010) · Pearl A Journal of Library and Information Science

D&S Barcode: A Dynamic and Sensitive Barcode for Intelligent Environment Monitoring

Li, Z., & Chen, W. (2014) · International Conference on Intelligent Environments (IE) · doi:10.1109/ie.2014.14 · Cited by 4 · see citing works

Extracting, filtering and simulating cellular barcodes using CellBarcode tools

Sun, W., Perkins, M., Huyghe, M., Faraldo, M. M., Fré, S., Perié, L., & Lyne, A.-M. (2024) · Nature Computational Science · doi:10.1038/s43588-024-00595-7 · Cited by 9 · see citing works

A DataMatrix-based Mutant Code Design and Recognition Method Research

Biao, L. (2007) · International Conference on Image and Graphics · doi:10.1109/icig.2007.172 · Cited by 10 · see citing works

Enhancement of HC2D Barcode Reader for Efficient Data Recognition

Aparna, V., & Muthukumar, R. (2018) · CiiT international journal of networking and communication engineering