Dynamics of DNA Double-Strand Breaks Revealed by Clustering of Damaged Chromosome Domains

Megabase Chromatin Domains Involved in DNA Double-Strand Breaks in Vivo

Rogakou, E. P., Boon, C., Redon, C., & Bonner, W. M. (1999) · The Journal of Cell Biology · doi:10.1083/jcb.146.5.905 · Cited by 2,422

The DNA Double-Strand Break Repair Gene hMRE11 Is Mutated in Individuals with an Ataxia-Telangiectasia-like Disorder

Stewart, G. S., Maser, R. S., Stankovic, T., Bressan, D. A., Kaplan, M. I., Jaspers, N. G. J., Raams, A., Byrd, P. J., Petrini, J. H. J., & Taylor, A. M. R. (1999) · Cell · doi:10.1016/s0092-8674(00)81547-0 · Cited by 1,060

Quantitative Detection of125IdU-Induced DNA Double-Strand Breaks with γ-H2AX Antibody

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Chromatin Motion Is Constrained by Association with Nuclear Compartments in Human Cells

Chubb, J. R., Boyle, S., Perry, P., & Bickmore, W. A. (2002) · Current Biology · doi:10.1016/s0960-9822(02)00695-4 · Cited by 580

Human Rad50/Mre11 Is a Flexible Complex that Can Tether DNA Ends

de Jager, M., van Noort, J., van Gent, D. C., Dekker, C., Kanaar, R., & Wyman, C. (2001) · Molecular Cell · doi:10.1016/s1097-2765(01)00381-1 · Cited by 512

In situ visualization of DNA double-strand break repair in human fibroblasts

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Colocalization of multiple DNA double-strand breaks at a single Rad52 repair centre

Lisby, M., Mortensen, U. H., & Rothstein, R. J. (2003) · Nature Cell Biology · doi:10.1038/ncb997 · Cited by 442

DNA Damage-Dependent Nuclear Dynamics of the Mre11 Complex

Mirzoeva, O. K., & Petrini, J. H. J. (2001) · Molecular and Cellular Biology · doi:10.1128/mcb.21.1.281-288.2001 · Cited by 387

NBS1 Localizes to γ-H2AX Foci through Interaction with the FHA/BRCT Domain

Kobayashi, J., Tauchi, H., Sakamoto, S., Nakamura, A., Morishima, K.-I., Matsuura, S., Kobayashi, T., Tamai, K., Tanimoto, K., & Komatsu, K. (2002) · Current Biology · doi:10.1016/s0960-9822(02)01259-9 · Cited by 306

S phase specific formation of the human Rad51 protein nuclear foci in lymphocytes.

Tashiro, S., Kotomura, N., Shinohara, A., Tanaka, K., Ueda, K., & Kamada, N. (1996) · PubMed · Cited by 165

Why are RNA processing factors recruited to DNA double-strand breaks?

Machour, F. E., Barisaac, A. S., & Ayoub, N. (2024) · Trends in Genetics · doi:10.1016/j.tig.2024.10.008 · Cited by 2

CpG Methylation Protects DNA against Ionizing Radiation

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Temporal and spatial dynamics of DNA double-strand break repair centers

Chen, J., Zhang, W., Ma, Y., Yan, X., Wang, Y., Ouyang, Q., Wu, M., & Yang, G. (2025) · DNA repair · doi:10.1016/j.dnarep.2025.103825 · Cited by 2

Radiobiology: State of the present art. A conference report

Begg, A. C. (2010) · International Journal of Radiation Biology · doi:10.3109/09553000903264549 · Cited by 2

Genome organization, instabilities, stem cells, and cancer

Pazhanisamy, S. K., & Jyothi, V. (2009) · Journal of Stem Cells and Regenerative Medicine · doi:10.46582/jsrm.0501004 · Cited by 2

Nuclear Foci Assays in Live Cells

Mori, E., & Asaithamby, A. (2019) · Methods in molecular biology · doi:10.1007/978-1-4939-9432-8_9 · Cited by 2

DNA damage: a histone-code mediator leaves the stage

Lukas, J., & Bártek, J. (2008) · Nature Structural & Molecular Biology · doi:10.1038/nsmb0508-430 · Cited by 2

Molecular Basis of Radiation Therapy

Woodward, W. A., & Cox, J. D. (2008) · Elsevier eBooks · doi:10.1016/b978-141603703-3.10050-0 · Cited by 2

Spatial inter-centromeric interactions facilitated the emergence of evolutionary new centromeresPreprint

Guin, K., Chen, Y., Mishra, R., Muzaki, S. R. B. M., Thimmappa, B. C., O’Brien, C. E., Butler, G., Sanyal, A., & Sanyal, K. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.02.07.938175 · Cited by 2

Telomeres and telomerase

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Radon (222Rn) gas

Pearson, D. D., Danforth, J. M., & Goodarzi, A. A. (2023) · Elsevier eBooks · doi:10.1016/b978-0-12-824315-2.00552-2 · Cited by 2

Characterization of the role of spatial proximity of DNA double-strand breaks in the formation of CRISPR-Cas9-induced large structural variationsPreprint

Dahl-Jessen, M., Terkelsen, T., Bak, R. O., & Jensen, U. B. (2025) · Genome Research · doi:10.1101/gr.278575.123 · Cited by 2

The Role of Chromatin Structure and Nuclear Architecture in the Cellular Response to DNA Double-Strand Breaks

Friedl, A. A. (2006) · Springer eBooks · doi:10.1007/7050_001 · Cited by 2

The Cell Biology of Mitotic Recombination in Saccharomyces Cerevisiae

Lisby, M., & Rothstein, R. J. (2006) · Topics in current genetics · doi:10.1007/978-3-540-71021-9_11 · Cited by 1

The cell biology of homologous recombination

Agarwal, S., Kanaar, R., & Essers, J. (2006) · Topics in current genetics · doi:10.1007/4735_2006_0214 · Cited by 1

Spatio-temporal analysis of DNA damage repair using the X-ray microbeam

Schettino, G., Ghita, M., & Prise, K. M. (2010) · The European Physical Journal D · doi:10.1140/epjd/e2010-00076-9 · Cited by 1

CBFB and MYH11 in inv(16)(p13q22) of acute myeloid leukemia displaying close spatial proximity in interphase nuclei of human hematopoietic stem cells

Weckerle, A., Santra, M., Ng, M. C. Y., Koty, P. P., & Wang, Y. (2011) · Genes Chromosomes and Cancer · doi:10.1002/gcc.20896 · Cited by 1

Homologous Recombination in Mammals

Barascu, A., Grabarz, A., & López, B. S. (2012) · Topics in current genetics · doi:10.1007/978-94-007-4531-5_4 · Cited by 1

An integrated on-line irradiation and in situ live cell imaging system

Liang, Y., Fu, Q., Wang, W., Liu, Y., Liu, F., Yang, G., & Wang, Y. (2015) · Nuclear Instruments and Methods in Physics Research Section B Beam Interactions with Materials and Atoms · doi:10.1016/j.nimb.2015.05.013 · Cited by 1

Modelling Heterogeneous Anomalous Dynamics of Radiation-Induced Double-Strand Breaks in DNA during Non-Homologous End-Joining Pathway

Nickolay Korabel, A., Warmenhoven, J.-W., Henthorn, N. T., Ingram, S., Fedotov, S. P., Heaven, C. J., Kirkby, K. J., Taylor, M. J., & Merchant, M. J. (2024) · Entropy · doi:10.3390/e26060502 · Cited by 1

Microbeam Radiation Biology

Prise, K. M., & Schettino, G. (2014) · Elsevier eBooks · doi:10.1016/b978-0-444-53632-7.00802-9 · Cited by 1

Visualize Dynamics of Chromosome Structure Formation and DNA Repair/Recombination Coupled With DNA Replication: Tight Coupled Role of DNA Replication in Chromosome Compaction and DNA Recombination

Gotoh, E. (2011) · InTech eBooks · doi:10.5772/19131 · Cited by 2

Enhanced radiation damage in irradiated and non-irradiated bystander regions by co-exposure to myosmine

Jiang, E., Zhu, L., Zhao, Y., Zhao, G., Bao, L., Chen, S., Yang, G., Wang, J., Xu, A., & Wu, L. (2008) · Mutation Research/Genetic Toxicology and Environmental Mutagenesis · doi:10.1016/j.mrgentox.2008.10.004 · Cited by 1

Eukaryotic Homologous Recombination Repair: A Dynamic Cast of Characters

Greenwald, E. P. (2012) · doi:10.7916/d8f195tn · Cited by 1

Exploring Notch signaling pathways for breast cancer treatment

Han, J. (2010) · ERA: Education and Research Archive (University of Alberta) · doi:10.7939/r3d71c · Cited by 1

Space Biosciences Research

Kovo, Y. (2015)

The Cell Biology of Rad54: Implications for homologous recombination

Agarwal, S. (2008) · RePub (Erasmus University Rotterdam)

Homologous Recombinational DNA Repair: from Prokaryotes to Eukaryotes: a Dissertation

Forget, A. L. (2004) · The Journal of the American Medical Association (JAMA) Network (American Medical Association) · doi:10.13028/edwz-yd18

Structural Characterization of the DNA Repair Protein Complex SbcC-SbcD of Thermotoga maritima

Bemeleit, D. (2008) · Electronic Theses of LMU Munich (Ludwig-Maximilians-Universität München) · doi:10.5282/edoc.8072

Analyse der Chromosomeninstabilität bei Fanconi-Anämie-Patienten mittels Fluoreszenz-in-situ Hybridisierung und konventioneller Zytogenetik

Paul, D. (2012) · Universitätsbibliothek der FU Berlin Hochschulschriftenstelle u. Dokumentenserver · doi:10.17169/refubium-13273

Influence of repair proteins and chromatin modifiers on mobility of DNA double-strand breaks induced by heavy ion irradiation

Becker, L. C. A. (2014) · GSI Repository (German Federal Government) · doi:10.26083/tuprints-00004038

Alterations in the Chromatin Environment Following the Introduction of DNA Breaks

Kruhlak, M. J., Celeste, A., Crouch, E. E., Orlov, M., Casellas, R. C., & Nussenzweig, A. (2009) · Nagasaki University's Academic Output SITE (Nagasaki University) · doi:10.11343/amn.53.s7

Using Imaging Methods to Interrogate Radiation-Induced Cell Signaling

Shankaran, H., Weber, T. J., von Neubeck, C., & Sowa, M. B. (2012) · Radiation Research · doi:10.1667/rr2669.1

A Microscopic Study of the DNA Damage Response

Dinant, C. (2008) · RePub (Erasmus University Rotterdam)

Protein Dynamics in Mammalian Genome Maintenance

Zotter, A. (2008) · RePub (Erasmus University Rotterdam)

RADIATION CYTOGENETICS: THE COLOR REVOLUTION

Durante, M. (2006) · Springer eBooks · doi:10.1007/1-4020-4956-0_24

Tracking DNA double-strand breaks

Stap, J. (2010) · UvA-DARE (University of Amsterdam)

Distribution and dynamics of charged particle-induced DNA double-strand breaks

Splinter, J. (2010) · GSI Repository (German Federal Government) · doi:10.26083/tuprints-00002228

Genetics of DNA replication and homologous recombination in arabidopsis

Schürmann, D. (2005) · edoc (University of Basel) · doi:10.5451/unibas-003646982

Live-cell visualisation of chromatin for the study of radiation-induced chromosome aberrations

Malis, G. (2011) · Brunel University Research Archive (BURA) (Brunel University London)

Therapy-related acute myeloid leukemia with chromosomal abnormalities involving t(9;22)(q34;q11) and t(3;21)(q26;q22) during chemotherapy for follicular lymphoma

Ogasawara, T., Aiba, M., & Kawauchi, K. (2013) · Journal of Cancer Research & Therapy · doi:10.14312/2052-4994.2013-21

Influence of repair proteins and chromatin modifiers on mobility of DNA double-strand breaks induced by heavy ion irradiation Einflüsse von Reparaturproteinen und Chromatinmodifikationen auf die Bewegung von DNA Doppelstrangbrüchen nach Schwerionenbestrahlung

Carmen, L., & Becker, A. (2014)

Histone c-H2AX Involvement in DNA Double-Strand Break Repair Pathways

Rogakou, N. A. A. B. A. E. P. (2005) · doi:10.1201/9780849352683-41

Topology of Genes in Mammalian Cell Nuclei with Special Emphasis on the MLL Gene and Its Translocation Partners

Murmann, A. E. (2005) · heiDOK (Heidelberg University) · doi:10.11588/heidok.00005373

Basic Concepts of Fusion Genes and Their Classification

Padmavathi, G., Roy, N. K., Bordoloi, D., Monisha, J., & Kunnumakkara, A. B. (2017) · WORLD SCIENTIFIC eBooks · doi:10.1142/9789813200944_0002

Spatial and Temporal Aspects of Radiation Response in Cell and Tissue Models

Prise, K. M., & Schettino, G. (2011) · Biological and medical physics series · doi:10.1007/978-94-007-2564-5_23

The Recognition and Mobility of DNA-Double Strand Breaks

Strecker, J. (2016) · TSpace (University of Toronto)

Ubiquitylation and SUMOylation: An Orchestrated Regulation During DNA Damage Repair

Espinoza-Corona, S., Bazán‐Tejeda, M. L., García‐Lepe, U. O., & Bermúdez‐Cruz, R. M. (2018) · InTech eBooks · doi:10.5772/intechopen.72583

Visualization of Chromatin Decompaction and Break Site Extrusion as Predicted by Statistical Polymer Modeling of Single-Locus Trajectories

Seeber, A., Gasser, S. M., Holcman, D., & Amitai, A. (2017) · Elsevier eBooks

Leveraging DNA Damage Response Pathways to Enhance the Precision of CRISPR-Mediated Genome Editing

Nambiar, T. S. (2020) · doi:10.7916/d8-2xwd-td48

Modelling and measurement of simple and complex DNA damage induction by ion irradiation

Henthorn, N. T. (2018) · Research Explorer (The University of Manchester)

Tracing the genetic etiology of cardiovascular disease using a hierarchy of common genetic variants derived from patient subgroups stratified by differential levels in severityPreprint

Fatakia, S. N. (2017) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/213124

Timing is everything: The link between chromosomal mobility and homologous recombination

Joseph, F. (2021) · doi:10.7916/d8-hq3a-wk45

Faculty Opinions recommendation of Dynamic formation of RecA filaments at DNA double strand break repair centers in live cells.

Norris, V. (2005) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.1027895.335852

Managing DNA Strand Breaks in Eukaryotic Cells

Friedberg, E. C., Walker, G. C., Siede, W., Wood, R. D., Schultz, R. A., & Ellenberger, T. E. (2014) · ASM Press eBooks · doi:10.1128/9781555816704.ch19

Faculty Opinions recommendation of Spatial inter-centromeric interactions facilitated the emergence of evolutionary new centromeres.

Heitman, J., Priest, S. J., & Yadav, V. (2020) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.738043801.793576418

Histone γ-H2AX Involvement in DNA Double-Strand Break Repair Pathways

Balatsos, N. A. A., & Rogakou, E. P. (2005) · CRC Press eBooks · doi:10.1201/9780849352683.ch32

The molecular principles of chromosomal translocations

Streb, P. (2023) · Publication Server of Goethe University Frankfurt am Main (Goethe University Frankfurt) · doi:10.21248/gups.73941

Genome scale CRISPR screens identify actin capping proteins as key modulators of therapeutic responses to radiation and immunotherapyPreprint

Shan, X., Renauer, P. A., Dong, C., Feng, Y., Ren, P., Lin, Q., Zhang, F., Tafreshi, N., Glazer, P. M., Chen, S., et al. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.01.14.575614

DNA Damage Induced by Fast Neutron and Gamma Rays Evaluated Using qPCR

Matuo, Y., Yanami, M., Tamaki, S., Akiyama, Y., Izumi, Y., Sato, F., Murata, I., & Shimizu, K. (2025) · Quantum Beam Science · doi:10.3390/qubs9030023

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Li, H., Xue, T., & McCord, R. P. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.08.25.672161

Excessive DNA Double‐Strand Breaks–Associated 3D Genome Reorganization Contributes to Neural Tube Defects with Folate Deficiency

Zhang, T., Lin, L., Li, J., Li, C., Liang, S., Bai, X., Wang, F., Bao, Y., Guo, D., Bo, X., et al. (2025) · Advanced Science · doi:10.1002/advs.202410603

Early Double-Strand Break Signaling is asynchronous and accelerated at complex breaksPreprint

Krawczyk, P. M., Qian, H., Kochan, J. A., Öztop, A., Gentili, M., Lof, J., Faas, M. R., Morales-Lozano, I., Heemskerk, T., van der Wal, E., et al. (2025) · Research Square · doi:10.21203/rs.3.rs-8040129/v1

Reverse gyrase and 3D genome architecture suppress hyperthermophile genome instability arising from horizontal gene transferPreprint

Yamaura, K., Takemata, N., Yamagami, T., Ishino, Y., & Atomi, H. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2025.12.08.692931

RaDRI: A computational model for radiosensitisation by DNA double strand break repair inhibitorsPreprint

Bogle, G., Hong, C. R., O'Brien-Gortner, S. F., Lipert, B. A., Hay, M. P., & Wilson, W. R. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.02.08.704735

Time-dependent 53BP1 foci kinetics in X-irradiated human hair follicle dermal papilla cells

Hanamiya, D., Etani, R., & Ojima, M. (2026) · Journal of Radiation Research · doi:10.1093/jrr/rrag005

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Grabarz, A. (2011) · theses.fr (ABES) · doi:10.70675/02d2d5f8z36aaz4d04z9d37z5384351bf9cf

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Muggiolu, G. (2017) · theses.fr (ABES) · doi:10.70675/b7a300e1z93f7z4364za9f4z484555be258a

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Gelot, C. (2014) · theses.fr (ABES) · doi:10.70675/e3a4a46bzed37z4f21zb647z0313e5cd5811

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Sellou, H. (2016) · theses.fr (ABES) · doi:10.70675/c2e900e6zb02ez4a12zb3fazc621be99e611

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Tsouroula, A. (2017) · theses.fr (ABES) · doi:10.70675/6345eaa6z96c3z47bdz8b53zab2527ff8785

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Lebeaupin, T. (2017) · theses.fr (ABES) · doi:10.70675/e61e4cf3z6af7z4766z8412zde6fc6de0dbe

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Choudjaye, J. (2016) · theses.fr (ABES) · doi:10.70675/32f25257z95d2z4be8zaf3dzb70b71274b8d

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Toulouze, M. (2018) · theses.fr (ABES) · doi:10.70675/0d736295z342bz4411z9850z5e2c8c531fa5

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Muhammad, A. (2021) · theses.fr (ABES) · doi:10.70675/2a4e3f69zfa80z4fbcz832fzafaf38393628

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Canoy, R. J. (2021) · theses.fr (ABES) · doi:10.70675/9f331f7az9151z4c95zbf47zbc6ed65a5896

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Rocher, V. (2021) · theses.fr (ABES) · doi:10.70675/217850a9z3e46z4daazadc6zb1bce2ccfe54

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Sall, F. B. (2021) · theses.fr (ABES) · doi:10.70675/4ade78c4z0bf6z4533zb4a6z084522268290

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Liu, S. (2022) · theses.fr (ABES) · doi:10.70675/80bdaa99zed42z4eb6zb888z9489e31eec93

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Saur, F. (2023) · theses.fr (ABES) · doi:10.70675/dce63b34z1573z4c87z9c02z6d5c0807db2a

Factors that contribute to B cell oncogenesis in people living with HIV

Shmakova, A. (2023) · theses.fr (ABES) · doi:10.70675/1d51b9d6z9a12z41f9z8f98z0c7f955aeb54

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Karpukhina, A. A. (2024) · theses.fr (ABES) · doi:10.70675/07b193edz7113z43b1z8a89zf8e13bc9f359

Radiopharmaceutical therapy provides superior survival advantage for leptomeningeal metastasis compared to external beam radiotherapy

Zhao, L., Clark, P. A., Shireman, J. M., Schepp, C. L., Rojas, H. C., Kwon, O., Adeniyi, A. O., Idrissou, M. B., Kerr, C. P., Iskandar, M., et al. (2026) · Neuro-Oncology · doi:10.1093/neuonc/noag098

Response of MRC-5 human lung fibroblasts to FLASH and conventional radiotherapy: A study on differential DNA damage and transcriptomic response

Jiang, Y., Wang, X., Yang, C., Wu, J., Chen, Y., Li, J., Wang, Q., & Zhu, W. (2026) · Computational Biology and Chemistry · doi:10.1016/j.compbiolchem.2026.109198

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Krawczyk, P. M., Borovski, T., Stap, J., Cijsouw, T., ten Cate, R., Medema, J. P., Kanaar, R., Franken, N. A. P., & Aten, J. A. (2012) · Journal of Cell Science · doi:10.1242/jcs.089847 · Cited by 164

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Soutoglou, E., Dorn, J. F., Sengupta, K., Jasin, M., Nussenzweig, A., Ried, T., Danuser, G., & Misteli, T. (2007) · Nature Cell Biology · doi:10.1038/ncb1591 · Cited by 509

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Iarovaia, O. V., Rubtsov, M. A., Ioudinkova, E. S., Tsfasman, T., Razin, S. V., & Vassetzky, Y. S. (2014) · Molecular Cancer · doi:10.1186/1476-4598-13-249 · Cited by 52

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Gothe, H. J., Minneker, V., & Roukos, V. (2018) · Advances in experimental medicine and biology · doi:10.1007/978-981-13-0593-1_3 · Cited by 14

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