Cited by 1,403Genomics and Phylogenetic StudiesChromosomal and Genetic VariationsPrimate Behavior and Ecology

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Evolutionary and biomedical insights from the rhesus macaque genome.

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DOI 10.1126/science.1139247

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Abstract

The rhesus macaque ( Macaca mulatta ) is an abundant primate species that diverged from the ancestors of Homo sapiens about 25 million years ago. Because they are genetically and physiologically similar to humans, rhesus monkeys are the most widely used nonhuman primate in basic and applied biomedical research. We determined the genome sequence of an Indian-origin Macaca mulatta female and compared the data with chimpanzees and humans to reveal the structure of ancestral primate genomes and to identify evidence for positive selection and lineage-specific expansions and contractions of gene families. A comparison of sequences from individual animals was used to investigate their underlying genetic diversity. The complete description of the macaque genome blueprint enhances the utility of this animal model for biomedical research and improves our understanding of the basic biology of the species.

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Authors: Gibbs, R. A., Rogers, J., Katze, M. G., Bumgarner, R., Weinstock, G. M., Mardis, E. R., Remington, K. A., Strausberg, R. L., Venter, J. C., Wilson, R. K., Batzer, M. A., Bustamante, C. D., Eichler, E. E., Hahn, M. W., Hardison, R. C., Makova, K. D., Miller, W., Milosavljevic, A., Palermo, R. E., Siepel, A., Sikela, J. M., Attaway, T., Bell, S., Bernard, K. E., Buhay, C. J., Chandrabose, M. N., Dao, M., Davis, C., Delehaunty, K. D., Ding, Y., Dinh, H. H., Dugan-Rocha, S., Fulton, L. A., Gabisi, R. A., Garner, T. T., Godfrey, J., Hawes, A. C., Hernandez, J., Hines, S., Holder, M., Hume, J., Jhangiani, S. N., Joshi, V., Khan, Z. M., Kirkness, E. F., Cree, A., Fowler, R. G., Lee, S., Lewis, L. R., Li, Z., Liu, Y.-S., Moore, S. M., Muzny, D., Nazareth, L. V., Ngo, D. N., Okwuonu, G. O., Pai, G., Parker, D., Paul, H. A., Pfannkoch, C., Pohl, C. S., Rogers, Y.-H., Ruiz, S. J., Sabo, A., Santibanez, J., Schneider, B. W., Smith, S. M., Sodergren, E., Svatek, A. F., Utterback, T. R., Vattathil, S., Warren, W., White, C. S., Chinwalla, A. T., Feng, Y., Halpern, A. L., Hillier, L. W., Huang, X., Minx, P., Nelson, J. O., Pepin, K. H., Qin, X., Sutton, G. G., Venter, E., Walenz, B. P., Wallis, J. W., Worley, K. C., Yang, S.-P., Jones, S. M., Marra, M. A., Rocchi, M., Schein, J. E., Baertsch, R., Clarke, L., Csürös, M., Glasscock, J., Harris, R. A., Havlak, P., Jackson, A. R., Jiang, H., Liu, Y., Messina, D. N., Shen, Y., Song, H. X.-Z., Wylie, T., Zhang, L., Birney, E., Han, K., Konkel, M. K., Lee, J., Smit, A. F. A., Ullmer, B., Wang, H., Xing, J., Burhans, R., Cheng, Z., Karro, J. E., Ma, J., Raney, B., She, X., Cox, M. J., Demuth, J. P., Dumas, L. J., Han, S.-G., Hopkins, J., Karimpour-Fard, A., Kim, Y. H., Pollack, J. R., Vinar, T., Addo-Quaye, C., Degenhardt, J., Denby, A., Hubisz, M. J., Indap, A., Kosiol, C., Lahn, B. T., Lawson, H. A., Marklein, A., Nielsen, R., Vallender, E. J., Clark, A. G., Ferguson, B., Hernandez, R. D., Hirani, K., Kehrer-Sawatzki, H., Kolb, J., Patil, S., Pu, L.-L., Ren, Y., Smith, D. G., Wheeler, D. A., Schenck, I., Ball, E. V., Chen, R., Cooper, D. N., Giardine, B., Hsu, F., Kent, W. J., Lesk, A., Nelson, D. L., O'Brien, W. E., Prüfer, K., Stenson, P. D., Wallace, J. C., Ke, H., Liu, X.-M., Wang, P., Xiang, A. P., Yang, F., Barber, G. P., Haussler, D., Karolchik, D., Kern, A. D., Kuhn, R. M., Smith, K. E., & Zwieg, A. S.
Affiliations: Texas Biomedical Research Institute (US)
Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA.
ORCID: Gibbs, Richard A.
Rogers, Jeffrey
Bumgarner, Roger
Weinstock, George M.
Mardis, Elaine R.
Venter, J. Craig
Wilson, Richard K.
Batzer, Mark A.
Bustamante, Carlos D.
Eichler, Evan E.
Hahn, Matthew W.
Hardison, Ross C.
Makova, Kateryna D.
Milosavljevic, Aleksandar
Palermo, Robert E.
Siepel, Adam
Sikela, James M.
Ding, Yan
Dinh, Huyen H.
Hernandez, Judith
Jhangiani, Shalini N.
Khan, Ziad Mohid
Muzny, Donna
Pohl, Craig S.
Sabo, Aniko
Sodergren, Erica
Vattathil, Selina
Warren, Wesley
Chinwalla, Asif T.
Feng, Yucheng
Halpern, Aaron L.
Huang, Xiaoqiu
Nelson, Joanne O.
Pepin, Kymberlie H.
Qin, Xiang
Walenz, Brian P.
Worley, Kim C.
Marra, Marco A.
Rocchi, Mariano
Baertsch, Robert
Clarke, Laura
Glasscock, Jarret
Harris, R. Alan
Liu, Yue
Messina, David N.
Shen, Yufeng
Wylie, Todd
Zhang, Lan
Birney, Ewan
Han, Kyudong
Konkel, Miriam K.
Lee, Jungnam
Smit, Arian F. A.
Ullmer, Brygg
Wang, Hui
Xing, Jinchuan
Ma, Jian
Raney, Brian
Demuth, Jeffery P.
Dumas, Laura J.
Pollack, Jonathan R.
Hubisz, Melissa J.
Indap, Amit
Kosiol, Carolin
Lahn, Bruce T.
Lawson, Heather A.
Marklein, Alison
Nielsen, Rasmus
Vallender, Eric J.
Clark, Andrew G.
Ferguson, Betsy
Hernandez, Ryan D.
Ren, Yanru
Smith, David Glenn
Wheeler, David A.
Chen, Rui
Cooper, David N.
Giardine, Belinda
Lesk, Arthur
Nelson, David L.
Wallace, James C.
Wang, Peng
Xiang, Andy Peng
Yang, Fan
Haussler, David
Kuhn, Robert M.
Venue: Science
Publisher: American Association for the Advancement of Science (AAAS)
Published: 2007-04-13
Volume: 316
Issue: 5822
Pages: 222-234
ISSN: 0036-8075 (ISSN-L)
1095-9203
DOI: 10.1126/science.1139247
OpenAlex: W2125548284
Cited by: 1,403
References: 69
Citations by year: 2026: 28 · 2025: 51 · 2024: 34 · 2023: 63 · 2022: 69 · 2021: 69 · 2020: 53 · 2019: 50 · 2018: 59 · 2017: 46 · 2016: 51 · 2015: 73 · 2014: 74 · 2013: 78 · 2012: 98
FWCI: 52.32
Type: journal article
Language: en
Open access: green
digitalcommons.lsu.edu
Locations: Science (publishedVersion)
PubMed (publishedVersion)
Cold Spring Harbor Laboratory Institutional Repository (Cold Spring Harbor Laboratory) (acceptedVersion)
Civil War Book Review (submittedVersion)
Max Planck Institute for Plasma Physics (submittedVersion)
Research at the University of Copenhagen (University of Copenhagen) (submittedVersion)
MPG.PuRe (Max Planck Society) (submittedVersion)
CINECA IRIS Institutional Research Information System (University of Bari Aldo Moro) (submittedVersion)
Funders: Wellcome Trust (062023)
National Human Genome Research Institute (U54HG003068, U54HG003079, R01HG002939)
Topics: Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Chromosomal and Genetic Variations
Life Sciences › Agricultural and Biological Sciences › Ecology, Evolution, Behavior and Systematics › Primate Behavior and Ecology
Keywords: rhesus monkeys, genome sequence, comparative genomics, primate evolution, positive selection, gene family expansion and contraction, genetic diversity, nonhuman primate model
MeSH terms: Animals, Pan troglodytes, Female, Multigene Family, Humans, Macaca mulatta, Male, Mutation, Species Specificity, Genetic Variation, Gene Rearrangement, Genome, Sequence Analysis, DNA, Evolution, Molecular, Gene Duplication, Genetic Diseases, Inborn, Biomedical Research

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Evolutionary and biomedical insights from the rhesus macaque genome.

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