Detection of large-scale variation in the human genome
Abstract
We identified 255 loci across the human genome that contain genomic imbalances among unrelated individuals. Twenty-four variants are present in > 10% of the individuals that we examined. Half of these regions overlap with genes, and many coincide with segmental duplications or gaps in the human genome assembly. This previously unappreciated heterogeneity may underlie certain human phenotypic variation and susceptibility to disease and argues for a more dynamic human genome structure.
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Submicroscopic copy-number variants smaller than 500 kb are common in normal human genomes.
“In 2004, two landmark studies (Iafrate et al., 2004; Sebat et al., 2004) demonstrated that submicroscopic variations (<500 kb in size) in DNA copy number (CNVs) are widespread in normal human genomes.”
From CNVs: Harbingers of a Rare Variant Revolution in Psychiatric Genetics (2012) · cites this paper as Iafrate et al., 2004
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“Taking structural variation in the human genome into account, our software integrated the public data of CNVs (http://projects. tcag.ca/variation/) into our analysis (Iafrate et al., 2004; Redon et al., 2006).”
MethodMale-biased autosomal effect of 16p13.11 copy number variation in neurodevelopmental disorders
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- Authors
- Iafrate, A. J., Feuk, L., Rivera, M. N., Listewnik, M. L., Donahoe, P. K., Qi, Y., Scherer, S. W., & Lee, C.
- Affiliations
- Brigham and Women's Hospital (US)
- University of Toronto (CA)
- Harvard University (US)
- Corresponding author
- Lee, Charles
- ORCID
- Venue
- Nature Genetics
- Published
- 2004-08-01
- Volume
- 36
- Issue
- 9
- Pages
- 949-951
- ISSN
- 1061-4036 (ISSN-L)
- 1546-1718
- OpenAlex
- W2116753165
- Cited by
- 2,892
- References
- 13
- Citations by year
- 2026: 12 · 2025: 24 · 2024: 38 · 2023: 41 · 2022: 37 · 2021: 54 · 2020: 70 · 2019: 60 · 2018: 69 · 2017: 82 · 2016: 86 · 2015: 132 · 2014: 166 · 2013: 199 · 2012: 206
- FWCI
- 93.38
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature Genetics (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genomic variations and chromosomal abnormalities
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Associations and Epidemiology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genome Rearrangement Algorithms
- Keywords
- genomic imbalances, copy number variation, segmental duplication, segmental deletion, disease susceptibility, phenotypic variability, genome assembly gaps
- MeSH terms
- Humans, Phenotype, Genetic Variation, Genome, Human, Gene Dosage, Genes, Duplicate
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