Spatially resolved, highly multiplexed RNA profiling in single cells

Chen, Kok Hao, Boettiger, Alistair N., Moffitt, Jeffrey R., Wang, Siyuan, Zhuang, Xiaowei·2015·Science
DOI 10.1126/science.aaa6090

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  7. Single-Cell Computational Strategies for Lineage Reconstruction in Tissue Systems
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    Kohman, Richie E., Kunjapur, Aditya M., Hysolli, Eriona, Wang, Yu, Church, George M. · 2018 · Angewandte Chemie International Edition
  10. Encoding Method of Single-cell Spatial Transcriptomics Sequencing
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  11. Advancing insights into stem cell niche complexities with next-generation technologies
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  12. A community-based transcriptomics classification and nomenclature of neocortical cell types
    Yuste, Rafael, Hawrylycz, Michael, Aalling, Nadia, Aguilar-Valles, Argel, Arendt, Detlev, Armañanzas, Ruben, Ascoli, Giorgio A., Bielza, Concha, Bokharaie, Vahid, Bergmann, Tobias Borgtoft et al. · 2020 · Nature Neuroscience
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  15. Decoding cell type diversity within the spinal cord
    Dobrott, Courtney I, Sathyamurthy, Anupama, Levine, Ariel J · 2019 · Current Opinion in Physiology
  16. Belayer: Modeling discrete and continuous spatial variation in gene expression from spatially resolved transcriptomics
    Ma, Cong, Chitra, Uthsav, Zhang, Shirley, Raphael, Benjamin J. · 2022 · Cell Systems
  17. Spatial transcriptome sequencing of FFPE tissues at cellular level
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  18. Simultaneous CRISPR screening and spatial transcriptomics reveals intracellular, intercellular, and functional transcriptional circuits
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  19. StabMap: Mosaic single cell data integration using non-overlapping features
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  20. CRISPRmap: Sequencing-free optical pooled screens mapping multi-omic phenotypes in cells and tissue
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  21. Multiplexed spatial transcriptomics methods and the application of expansion microscopy
    Fortner, Andra, Bucur, Octavian · 2024 · Frontiers in Cell and Developmental Biology
  22. Interpretable representation learning for 3D multi-piece intracellular structures using point clouds
    Vasan, Ritvik, Ferrante, Alexandra J., Borensztejn, Antoine, Frick, Christopher L., Garrison, Philip, Gaudreault, Nathalie, Mogre, Saurabh S., Mohammed, Fatwir S., Morris, Benjamin, Pires, Guilherme G. et al. · 2025 · Nature Methods
  23. Research progress on immunotherapeutics for triple-negative breast cancer from a single-cell perspective
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