The origin of domestication genes in goats

Trimmomatic: a flexible trimmer for Illumina sequence data

Bolger, A. M., Lohse, M., & Usadel, B. (2014) · Bioinformatics · doi:10.1093/bioinformatics/btu170 · Cited by 65,548 · see citing works

The Sequence Alignment/Map format and SAMtools

Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R., & 1000 Genome Project Data Processing Subgroup (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp352 · Cited by 62,041 · see citing works

Fast and accurate short read alignment with Burrows-Wheeler transform

Li, H., & Durbin, R. (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp324 · Cited by 58,607 · see citing works

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Katoh, K., & Standley, D. M. (2013) · Molecular Biology and Evolution · doi:10.1093/molbev/mst010 · Cited by 46,209 · see citing works

MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.

Tamura, K., Stecher, G., Peterson, D., Filipski, A., & Kumar, S. (2013) · Molecular biology and evolution · doi:10.1093/molbev/mst197 · Cited by 41,174 · see citing works

PLINK: a tool set for whole-genome association and population-based linkage analyses.

Purcell, S., Neale, B., Todd-Brown, K., Thomas, L., Ferreira, M. A. R., Bender, D., Maller, J., Sklar, P., de Bakker, P. I. W., Daly, M. J., et al. (2007) · The American Journal of Human Genetics · doi:10.1086/519795 · Cited by 34,089 · see citing works

Cutadapt removes adapter sequences from high-throughput sequencing reads

Martin, M. (2011) · EMBnet.journal · doi:10.14806/ej.17.1.200 · Cited by 33,889 · see citing works

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Stamatakis, A. (2014) · Bioinformatics · doi:10.1093/bioinformatics/btu033 · Cited by 32,291 · see citing works

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

McKenna, A., Hanna, M., Banks, E., Sivachenko, A., Cibulskis, K., Kernytsky, A., Garimella, K., Altshuler, D., Gabriel, S., Daly, M., et al. (2010) · Genome Research · doi:10.1101/gr.107524.110 · Cited by 27,895 · see citing works

jModelTest 2: more models, new heuristics and parallel computing

Darriba, D., Taboada, G. L., Doallo, R., & Posada, D. (2012) · Nature Methods · doi:10.1038/nmeth.2109 · Cited by 16,828 · see citing works

The variant call format and VCFtools

Danecek, P., Auton, A., Abecasis, G. R., Albers, C. A., Banks, E., DePristo, M. A., Handsaker, R. E., Lunter, G. A., Marth, G., Sherry, S. T., et al. (2011) · Bioinformatics · doi:10.1093/bioinformatics/btr330 · Cited by 16,008 · see citing works

Haploview: analysis and visualization of LD and haplotype maps

Barrett, J., Fry, B., Maller, J., & Daly, M. (2005) · Bioinform. · doi:10.1093/bioinformatics/bth457 · Cited by 15,086 · see citing works

IntCal13 and Marine13 radiocarbon age calibration curves 0–50,000 years cal BP

Reimer, P. J., Bard, E., Bayliss, A., Beck, J. W., Blackwell, P. G., Ramsey, C. B., Buck, C. E., Cheng, H., Edwards, R. L., Friedrich, M., et al. (2013) · Radiocarbon · doi:10.2458/azu_js_rc.55.16947 · Cited by 14,591 · see citing works

Fast model-based estimation of ancestry in unrelated individuals

Alexander, D. H., Novembre, J., & Lange, K. (2009) · Genome Research · doi:10.1101/gr.094052.109 · Cited by 9,898 · see citing works

Aligning sequence reads, clone sequences and assembly contigs with BWA-MEMPreprint

Li, H. (2013) · arXiv (Cornell University) · doi:10.48550/arxiv.1303.3997 · Cited by 9,540 · see citing works

BEAST 2: a software platform for Bayesian evolutionary analysis

Bouckaert, R., Heled, J., Kühnert, D., Vaughan, T., Wu, C.-H., Xie, D., Suchard, M. A., Rambaut, A., & Drummond, A. J. (2014) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1003537 · Cited by 6,527 · see citing works

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

Li, H. (2011) · Bioinformatics · doi:10.1093/bioinformatics/btr509 · Cited by 6,283 · see citing works

IntCal13とMarine13放射性炭素年代較正曲線0-50,000年cal BP

Reimer, P. J., Bard, É., Bayliss, A., Warren, B. J., Blackwell, P. G., Bronk, R., Buck Caitlin, E., Cheng, H., Lawrence, E. R., Michael, F., et al. (2013) · Radiocarbon · Cited by 5,676 · see citing works

Population Structure and Eigenanalysis

Patterson, N., Price, A. L., & Reich, D. (2006) · PLoS Genetics · doi:10.1371/journal.pgen.0020190 · Cited by 5,280 · see citing works

Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEMPreprint

Li, H. (2014) · arXiv (Cornell University) · doi:10.6084/m9.figshare.963153.v1 · Cited by 5,150 · see citing works

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

Xie, C., Mao, X., Huang, J., Ding, Y., Wu, J., Dong, S., Kong, L., Gao, G., Li, C., & Wei, L. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkr483 · Cited by 5,078 · see citing works

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

Letunic, I., & Bork, P. (2016) · Nucleic Acids Res. · doi:10.1093/nar/gkw290 · Cited by 4,851 · see citing works

Model selection in ecology and evolution

Johnson, J. B., & Omland, K. S. (2004) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2003.10.013 · Cited by 3,838 · see citing works

Rapid and Accurate Haplotype Phasing and Missing-Data Inference for Whole-Genome Association Studies By Use of Localized Haplotype Clustering

Browning, S. R., & Browning, B. L. (2007) · The American Journal of Human Genetics · doi:10.1086/521987 · Cited by 3,138 · see citing works

ANGSD: Analysis of Next Generation Sequencing Data

Korneliussen, T. S., Albrechtsen, A., & Nielsen, R. (2014) · BMC Bioinformatics · doi:10.1186/s12859-014-0356-4 · Cited by 2,982 · see citing works

Ancient Admixture in Human History

Patterson, N., Moorjani, P., Luo, Y., Mallick, S., Rohland, N., Zhan, Y., Genschoreck, T., Webster, T., & Reich, D. (2012) · Genetics · doi:10.1534/genetics.112.145037 · Cited by 2,848 · see citing works

Variance component model to account for sample structure in genome-wide association studies

Kang, H. M., Sul, J. H., Service, S. K., Zaitlen, N. A., Kong, S.-Y., Freimer, N. B., Sabatti, C., & Eskin, E. (2010) · Nature Genetics · doi:10.1038/ng.548 · Cited by 2,817 · see citing works

Inference of population splits and mixtures from genome-wide allele frequency data

Pickrell, J. K., & Pritchard, J. K. (2012) · PLoS Genetics · doi:10.1371/journal.pgen.1002967 · Cited by 2,731 · see citing works

pegas: an R package for population genetics with an integrated–modular approach

Paradis, E. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btp696 · Cited by 2,601 · see citing works

Illumina Sequencing Library Preparation for Highly Multiplexed Target Capture and SequencingPreprint

Meyer, M., & Kircher, M. (2010) · Cold Spring Harbor Protocols · doi:10.1101/pdb.prot5448 · Cited by 2,233 · see citing works

Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data

Okonechnikov, K., Conesa, A., & García-Alcalde, F. (2016) · Bioinformatics · doi:10.1093/bioinformatics/btv566 · Cited by 2,145 · see citing works

AdapterRemoval v2: rapid adapter trimming, identification, and read merging

Schubert, M., Lindgreen, S., & Orlando, L. (2016) · BMC Research Notes · doi:10.1186/s13104-016-1900-2 · Cited by 2,091 · see citing works

Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data

Gutenkunst, R. N., Hernandez, R. D., Williamson, S. H., & Bustamante, C. D. (2009) · PLoS Genetics · doi:10.1371/journal.pgen.1000695 · Cited by 1,906 · see citing works

FastME 2.0: A Comprehensive, Accurate, and Fast Distance-Based Phylogeny Inference Program: Table 1.

Lefort, V., Desper, R., & Gascuel, O. (2015) · Molecular Biology and Evolution · doi:10.1093/molbev/msv150 · Cited by 1,792 · see citing works

SMART 7: recent updates to the protein domain annotation resource

Letunić, I., Doerks, T., & Peer Bork, B. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkr931 · Cited by 1,725 · see citing works

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

Jónsson, H., Ginolhac, A., Schubert, M., Johnson, P. L. F., & Orlando, L. (2013) · Bioinformatics · doi:10.1093/bioinformatics/btt193 · Cited by 1,669 · see citing works

Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences

Li, H. (2016) · Bioinformatics · doi:10.1093/bioinformatics/btw152 · Cited by 1,460 · see citing works

Robust Demographic Inference from Genomic and SNP Data

Excoffier, L., Dupanloup, I., Huerta‐Sánchez, E., Sousa, V. C., & Foll, M. (2013) · PLoS Genetics · doi:10.1371/journal.pgen.1003905 · Cited by 1,434 · see citing works

Mucin dynamics and enteric pathogens

McGuckin, M. A., Lindén, S. K., Sutton, P., & Florin, T. H. (2011) · Nature Reviews Microbiology · doi:10.1038/nrmicro2538 · Cited by 1,428 · see citing works

Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA

Huerta-Sánchez, E., Jin, X., Asan, Bianba, Z., Peter, B. M., Vinckenbosch, N., Liang, Y., Yi, X., He, M., Somel, M., et al. (2014) · Nature · doi:10.1038/nature13408 · Cited by 1,208 · see citing works

Inference of Population Structure using Dense Haplotype Data

Lawson, D. J., Hellenthal, G., Myers, S., & Falush, D. (2012) · PLoS Genetics · doi:10.1371/journal.pgen.1002453 · Cited by 1,188 · see citing works

Domestication and early agriculture in the Mediterranean Basin: Origins, diffusion, and impact

Zeder, M. A. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0801317105 · Cited by 1,160 · see citing works

Genotype Imputation with Millions of Reference Samples

Browning, B. L., & Browning, S. R. (2016) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2015.11.020 · Cited by 1,149 · see citing works

Mosdepth: quick coverage calculation for genomes and exomes

Pedersen, B. S., & Quinlan, A. R. (2017) · Bioinformatics · doi:10.1093/bioinformatics/btx699 · Cited by 1,149 · see citing works

Inferring human population size and separation history from multiple genome sequences

Schiffels, S., & Durbin, R. M. (2014) · Nature Genetics · doi:10.1038/ng.3015 · Cited by 1,051 · see citing works

The program structure does not reliably recover the correct population structure when sampling is uneven: subsampling and new estimators alleviate the problem

Puechmaille, S. J. (2016) · Molecular Ecology Resources · doi:10.1111/1755-0998.12512 · Cited by 986 · see citing works

Robust and scalable inference of population history from hundreds of unphased whole genomes

Terhorst, J., Kamm, J., & Song, Y. S. (2016) · Nature Genetics · doi:10.1038/ng.3748 · Cited by 950 · see citing works

selscan: An Efficient Multithreaded Program to Perform EHH-Based Scans for Positive Selection

Szpiech, Z. A., & Hernandez, R. D. (2014) · Molecular Biology and Evolution · doi:10.1093/molbev/msu211 · Cited by 780 · see citing works

Behavioral aspects of animal domestication

Price, E. O. (1984) · The Quarterly Review of Biology · doi:10.1086/413673 · Cited by 742 · see citing works

Estimating the total number of phosphoproteins and phosphorylation sites in eukaryotic proteomes

Vlastaridis, P., Kyriakidou, P., Chaliotis, A., de Peer, Y. V., Oliver, S. G., & Amoutzias, G. D. (2017) · GigaScience · doi:10.1093/gigascience/giw015 · Cited by 732 · see citing works

Adaptive introgression in animals: examples and comparison to new mutation and standing variation as sources of adaptive variation

Hedrick, P. W. (2013) · Molecular Ecology · doi:10.1111/mec.12415 · Cited by 695 · see citing works

Inferring Population Structure and Admixture Proportions in Low-Depth NGS Data

Meisner, J., & Albrechtsen, A. (2018) · Genetics · doi:10.1534/genetics.118.301336 · Cited by 673 · see citing works

The Evolution of Animal Domestication

Larson, G., & Fuller, D. Q. (2014) · Annual Review of Ecology, Evolution, and Systematics · doi:10.1146/annurev-ecolsys-110512-135813 · Cited by 640 · see citing works

Improving the Accuracy and Efficiency of Identity-by-Descent Detection in Population Data

Browning, B. L., & Browning, S. R. (2013) · Genetics · doi:10.1534/genetics.113.150029 · Cited by 639 · see citing works

Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome

Bickhart, D. M., Rosen, B. D., Koren, S., Sayre, B. L., Hastie, A. R., Chan, S., Lee, J., Lam, E. T., Liachko, I., Sullivan, S. T., et al. (2017) · Nature Genetics · doi:10.1038/ng.3802 · Cited by 620 · see citing works

A database of vertebrate longevity records and their relation to other life‐history traits

de Magalhães, J. P., & Costa, J. S. (2009) · Journal of Evolutionary Biology · doi:10.1111/j.1420-9101.2009.01783.x · Cited by 577 · see citing works

The Roles of Androgen Receptors and Androgen-Binding Proteins in Nongenomic Androgen Actions

Heinlein, C. A., & Chang, C. (2002) · Molecular Endocrinology · doi:10.1210/me.2002-0070 · Cited by 568 · see citing works

Nomenclature for incompletely specified bases in nucleic acid sequences: rcommendations 1984

Cornish-Bowden, A. (1985) · Nucleic Acids Research · doi:10.1093/nar/13.9.3021 · Cited by 548 · see citing works

Some modifications of the McMaster helminth egg-counting technique and apparatus.

Whitlock, H. V. (1948) · Journal. Council for Scientific and Industrial Research · Cited by 544 · see citing works

The shaping of modern human immune systems by multiregional admixture with archaic humans

Abi-Rached, L., Jobin, M. J., Kulkarni, S., McWhinnie, A., Dalva, K., Gragert, L., Babrzadeh, F., Gharizadeh, B., Luo, M., Plummer, F. A., et al. (2011) · Science · doi:10.1126/science.1209202 · Cited by 537 · see citing works

Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus)

Dong, Y., Xie, M., Jiang, Y., Xiao, N., Du, X., Zhang, W., Tosser‐Klopp, G., Wang, J., Yang, S., Liang, J., et al. (2012) · Nature Biotechnology · doi:10.1038/nbt.2478 · Cited by 524 · see citing works

Evidence for archaic adaptive introgression in humans

Racimo, F., Sankararaman, S., Nielsen, R., & Huerta-Sánchez, E. (2015) · Nature Reviews Genetics · doi:10.1038/nrg3936 · Cited by 521 · see citing works

EAGER: efficient ancient genome reconstruction

Peltzer, A., Jäger, G., Herbig, A., Seitz, A., Kniep, C., Krause, J., & Nieselt, K. (2016) · Genome Biology · doi:10.1186/s13059-016-0918-z · Cited by 509 · see citing works

Targeted Retrieval and Analysis of Five Neandertal mtDNA Genomes

Briggs, A. W., Good, J. M., Green, R. E., Krause, J., Maričić, T., Stenzel, U., Lalueza‐Fox, C., Rudan, P., Brajković, D., Kućan, Ž., et al. (2009) · Science · doi:10.1126/science.1174462 · Cited by 501 · see citing works

Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits

Chen, L., Qiu, Q., Jiang, Y., Wang, K., Lin, Z., Li, Z., Bibi, F., Yang, Y., Wang, J., Nie, W., et al. (2019) · Science · doi:10.1126/science.aav6202 · Cited by 441 · see citing works

SNP Calling, Genotype Calling, and Sample Allele Frequency Estimation from New-Generation Sequencing Data

Nielsen, R., Korneliussen, T., Albrechtsen, A., Li, Y., & Wang, J. (2012) · PLoS ONE · doi:10.1371/journal.pone.0037558 · Cited by 424 · see citing works

Impact of gastrointestinal parasitic nematodes of sheep, and the role of advanced molecular tools for exploring epidemiology and drug resistance - an Australian perspective

Roeber, F., Jex, A. R., & Gasser, R. B. (2013) · Parasites & Vectors · doi:10.1186/1756-3305-6-153 · Cited by 414 · see citing works

Whole-Genome Resequencing Reveals World-Wide Ancestry and Adaptive Introgression Events of Domesticated Cattle in East Asia

Chen, N., Cai, Y., Chen, Q., Li, R., Wang, K., Huang, Y., Hu, S., Huang, S., Zhang, H., Zheng, Z., et al. (2018) · Nature Communications · doi:10.1038/s41467-018-04737-0 · Cited by 403 · see citing works

Structural organization and classification of the human mucin genes

Moniaux, N. (2001) · Frontiers in bioscience · doi:10.2741/moniaux · Cited by 387 · see citing works

Large multiallelic copy number variations in humans

Handsaker, R. E., Doren, V. V., Berman, J. R., Genovese, G., Kashin, S., Boettger, L. M., & McCarroll, S. A. (2015) · Nature Genetics · doi:10.1038/ng.3200 · Cited by 382 · see citing works

Analysis of Human Sequence Data Reveals Two Pulses of Archaic Denisovan Admixture

Browning, S. R., Browning, B. L., Zhou, Y., Tucci, S., & Akey, J. M. (2018) · Cell · doi:10.1016/j.cell.2018.02.031 · Cited by 381 · see citing works

Ancient genomes revisit the ancestry of domestic and Przewalski’s horses

Gaunitz, C., Fages, A., Hanghøj, K., Albrechtsen, A., Khan, N., Schubert, M., Seguin‐Orlando, A., Owens, I. J., Felkel, S., Bignon‐Lau, O., et al. (2018) · Science · doi:10.1126/science.aao3297 · Cited by 371 · see citing works

The goat domestication process inferred from large-scale mitochondrial DNA analysis of wild and domestic individuals

Naderi, S., Rezaei, H. R., Pompanon, F., Blum, M. G. B., Negrini, R., Naghash, H.-R., Balkız, Ö., Mashkour, M., Gaggiotti, O. E., Ajmone‐Marsan, P., et al. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0804782105 · Cited by 357 · see citing works

Whole-genome sequencing of giant pandas provides insights into demographic history and local adaptation

Zhao, S., Zheng, P., Dong, S., Zhan, X., Wu, Q., Guo, X., Hu, Y., He, W., Zhang, S., Fan, W., et al. (2012) · Nature Genetics · doi:10.1038/ng.2494 · Cited by 349 · see citing works

MSMS : a coalescent simulation program including recombination, demographic structure and selection at a single locus

Ewing, G. B., & Hermisson, J. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btq322 · Cited by 349 · see citing works

Convergent genomic signatures of domestication in sheep and goats

Alberto, F. J., Boyer, F., Orozco-terWengel, P., Streeter, I., Servin, B., de Villemereuil, P., Benjelloun, B., Librado, P., Biscarini, F., Colli, L., et al. (2018) · Nature Communications · doi:10.1038/s41467-018-03206-y · Cited by 339 · see citing works

Adaptive introgression underlies polymorphic seasonal camouflage in snowshoe hares

Jones, M. R., Mills, L. S., Alves, P. C., Callahan, C. M., Alves, J. M., Lafferty, D. J. R., Jiggins, F. M., Jensen, J. D., Melo‐Ferreira, J., & Good, J. M. (2018) · Science · doi:10.1126/science.aar5273 · Cited by 331 · see citing works

S weep F inder 2: increased sensitivity, robustness and flexibility

DeGiorgio, M., Huber, C. D., Hubisz, M. J., Hellmann, I., & Nielsen, R. (2016) · Bioinformatics · doi:10.1093/bioinformatics/btw051 · Cited by 322 · see citing works

Calculation of Tajima’s D and other neutrality test statistics from low depth next-generation sequencing data

Korneliussen, T. S., Moltke, I., Albrechtsen, A., & Nielsen, R. (2013) · BMC Bioinformatics · doi:10.1186/1471-2105-14-289 · Cited by 278 · see citing works

Adaptive introgression enables evolutionary rescue from extreme environmental pollution

Oziolor, E. M., Reid, N. M., Yair, S., Lee, K. M., VerPloeg, S. L. G., Bruns, P. C., Shaw, J. R., Whitehead, A., & Matson, C. W. (2019) · Science · doi:10.1126/science.aav4155 · Cited by 275 · see citing works

Wild sheep and goats and their relatives : status survey and conservation action plan for Caprinae

Shackleton, D. M. (1997) · IUCN eBooks · Cited by 264 · see citing works

Introgression of Neandertal- and Denisovan-like Haplotypes Contributes to Adaptive Variation in Human Toll-like Receptors

Dannemann, M., Andrés, A. M., & Kelso, J. (2016) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2015.11.015 · Cited by 249 · see citing works

FACTORS AFFECTING THE SECRETION OF LUTEINIZING HORMONE IN THE EWE

Martin, G. B. (1984) · Biological reviews/Biological reviews of the Cambridge Philosophical Society · doi:10.1111/j.1469-185x.1984.tb00401.x · Cited by 233 · see citing works

Pervasive introgression facilitated domestication and adaptation in the Bos species complex

Wu, D., Ding, X., Wang, S., Wójcik, J. M., Zhang, Y., Tokarska, M., Li, Y., Wang, M.-S., Faruque, O., Nielsen, R., et al. (2018) · Nature Ecology & Evolution · doi:10.1038/s41559-018-0562-y · Cited by 233 · see citing works

Ancient goat genomes reveal mosaic domestication in the Fertile Crescent

Daly, K. G., Delser, P. M., Mullin, V. E., Scheu, A., Mattiangeli, V., Teasdale, M. D., Hare, A. J., Bürger, J., Verdugo, M. P., Collins, M. J., et al. (2018) · Science · doi:10.1126/science.aas9411 · Cited by 223 · see citing works

The Genome Landscape of Tibetan Sheep Reveals Adaptive Introgression from Argali and the History of Early Human Settlements on the Qinghai–Tibetan Plateau

Hu, X., Yang, J. H., Xie, X.-L., Lv, F., Cao, Y.-H., Li, W., Liu, M., Wang, Y., Li, J., Liu, Y., et al. (2018) · Molecular Biology and Evolution · doi:10.1093/molbev/msy208 · Cited by 191 · see citing works

Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Colli, L., Milanesi, M., Talenti, A., Bertolini, F., Chen, M., Crisà, A., Daly, K. G., Corvo, M. D., Guldbrandtsen, B., Lenstra, J. A., et al. (2018) · Genetics Selection Evolution · doi:10.1186/s12711-018-0422-x · Cited by 181 · see citing works

The International Union for the Conservation of Nature and Natural Resources

Boyle, A. M. V. (1957) · Oryx · doi:10.1017/s0030605300039235 · Cited by 178 · see citing works

STIM1 Controls Neuronal Ca2+ Signaling, mGluR1-Dependent Synaptic Transmission, and Cerebellar Motor Behavior

Hartmann, J., Karl, R. M., Alexander, R. P. D., Adelsberger, H., Brill, M. S., Rühlmann, C., Ansel, A., Sakimura, K., Baba, Y., Kurosaki, T., et al. (2014) · Neuron · doi:10.1016/j.neuron.2014.03.027 · Cited by 177 · see citing works

A high resolution atlas of gene expression in the domestic sheep (Ovis aries)

Clark, E. L., Bush, S. J., McCulloch, M. E. B., Farquhar, I., Young, R. A., Lefèvre, L., Pridans, C., Tsang, H., Wu, C., Afrasiabi, C., et al. (2017) · PLoS Genetics · doi:10.1371/journal.pgen.1006997 · Cited by 170 · see citing works

Genes of domestic mammals augmented by backcrossing with wild ancestors

Vilà, C., Seddon, J. M., & Ellegren, H. (2005) · Trends in Genetics · doi:10.1016/j.tig.2005.02.004 · Cited by 153 · see citing works

Evolutionary history of the genus Capra (Mammalia, Artiodactyla): Discordance between mitochondrial DNA and Y-chromosome phylogenies

Pidancier, N., Jordan, S., Luikart, G., & Taberlet, P. (2006) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2006.04.002 · Cited by 152 · see citing works

CNVcaller: highly efficient and widely applicable software for detecting copy number variations in large populations

Wang, X., Zheng, Z., Cai, Y., Chen, T., Li, C., Fu, W., & Jiang, Y. (2017) · GigaScience · doi:10.1093/gigascience/gix115 · Cited by 150 · see citing works

New Software for the Fast Estimation of Population Recombination Rates (FastEPRR) in the Genomic Era

Gao, F., Chen, M., Hu, W., & Li, H. (2016) · G3 Genes Genomes Genetics · doi:10.1534/g3.116.028233 · Cited by 147 · see citing works

Improving the estimation of genetic distances from Next-Generation Sequencing data

Vieira, F. G., Lassalle, F., Korneliussen, T. S., & Fumagalli, M. (2015) · Biological Journal of the Linnean Society · doi:10.1111/bij.12511 · Cited by 136 · see citing works

Genetic Signatures of a Mediterranean Influence in Iberian Peninsula Sheep Husbandry

Pereira, F., Davis, S., Pereira, L., McEvoy, B., Bradley, D. G., & Amorim, A. (2006) · Molecular Biology and Evolution · doi:10.1093/molbev/msl007 · Cited by 129 · see citing works

Evolutionary history of Tibetans inferred from whole-genome sequencing

Hu, H., Petousi, N., Glusman, G., Yu, Y., Bohlender, R. J., Tashi, T., Downie, J. M., Roach, J. C., Cole, A. M., Lorenzo, F., et al. (2017) · PLoS Genetics · doi:10.1371/journal.pgen.1006675 · Cited by 125 · see citing works

Systematics of the Genus Capra Inferred from Mitochondrial DNA Sequence Data

Manceau, V., Després, L., Bouvet, J., & Taberlet, P. (1999) · Molecular Phylogenetics and Evolution · doi:10.1006/mpev.1999.0688 · Cited by 122 · see citing works

Expression profile of mucins (MUC2, MUC5AC and MUC6) in Helicobacter pylori infected pre-neoplastic and neoplastic human gastric epithelium

Subramani, D. B., Jayanthi, V., Devaraj, N., Reis, C. A., & Devaraj, H. (2006) · Molecular Cancer · doi:10.1186/1476-4598-5-10 · Cited by 117 · see citing works

Reference genome of wild goat (Capra aegagrus) and sequencing of goat breeds provide insight into genic basis of goat domestication

Dong, Y., Zhang, X., Xie, M., Arefnezhad, B., Wang, Z., Wang, W., Feng, S., Huang, G., Guan, R., Shen, W., et al. (2015) · BMC Genomics · doi:10.1186/s12864-015-1606-1 · Cited by 116 · see citing works

A new role for mucins in immunity: Insights from gastrointestinal nematode infection

Hasnain, S. Z., Gallagher, A. L., Grencis, R. K., & Thornton, D. J. (2012) · The International Journal of Biochemistry & Cell Biology · doi:10.1016/j.biocel.2012.10.011 · Cited by 116 · see citing works

Neandertal Origin of Genetic Variation at the Cluster of OAS Immunity Genes

Mendez, F. L., Watkins, J. C., & Hammer, M. F. (2013) · Molecular Biology and Evolution · doi:10.1093/molbev/mst004 · Cited by 113 · see citing works

Introgression from Domestic Goat Generated Variation at the Major Histocompatibility Complex of Alpine Ibex

Grossen, C., Keller, L. F., Biebach, I., & Croll, D. (2014) · PLoS Genetics · doi:10.1371/journal.pgen.1004438 · Cited by 110 · see citing works

Long Term Population, City Size and Climate Trends in the Fertile Crescent: A First Approximation

Lawrence, D., Philip, G., Hunt, H., Snape, L., & Wilkinson, T. J. (2016) · PLoS ONE · doi:10.1371/journal.pone.0152563 · Cited by 109 · see citing works

The first Neolithic urban center on China's north Loess Plateau: The rise and fall of Shimao

Sun, Z., Shao, J., Li, L., Cui, J., Bonomo, M. F., Guo, Q., Wu, X., & Wang, J. (2017) · Archaeological Research in Asia · doi:10.1016/j.ara.2017.02.004 · Cited by 87 · see citing works

STIM1 Regulates Somatic Ca2+Signals and Intrinsic Firing Properties of Cerebellar Purkinje Neurons

Ryu, C., Jang, D. C., Jung, D., Kim, Y. G., Shim, H. G., Ryu, H.-H., Lee, Y., Linden, D. J., Worley, P. F., & Kim, S. J. (2017) · Journal of Neuroscience · doi:10.1523/jneurosci.3973-16.2017 · Cited by 84 · see citing works

Powerful Inference with the D-Statistic on Low-Coverage Whole-Genome Data

Soraggi, S., Wiuf, C., & Albrechtsen, A. (2017) · G3 Genes Genomes Genetics · doi:10.1534/g3.117.300192 · Cited by 83 · see citing works

Frequentist Estimation of Coalescence Times From Nucleotide Sequence Data Using a Tree-Based Partition

Tang, H., Siegmund, D., Shen, P., Oefner, P. J., & Feldman, M. W. (2002) · Genetics · doi:10.1093/genetics/161.1.447 · Cited by 77 · see citing works

Genome wide analysis of the bovine mucin genes and their gastrointestinal transcription profile

Hoorens, P. R., Rinaldi, M., Li, R. W., Goddeeris, B. M., Claerebout, E., Vercruysse, J., & Geldhof, P. (2011) · BMC Genomics · doi:10.1186/1471-2164-12-140 · Cited by 70 · see citing works

Genomic Regions Associated with Sheep Resistance to Gastrointestinal Nematodes

Benavides, M. V., Sonstegard, T. S., & Tassell, C. P. V. (2016) · Trends in Parasitology · doi:10.1016/j.pt.2016.03.007 · Cited by 64 · see citing works

Genomics, the origins of agriculture, and our changing microbe‐scape: Time to revisit some old tales and tell some new ones

Harper, K. N., & Armelagos, G. J. (2013) · American Journal of Physical Anthropology · doi:10.1002/ajpa.22396 · Cited by 62 · see citing works

Infection with the gastrointestinal nematode Ostertagia ostertagi in cattle affects mucus biosynthesis in the abomasum

Rinaldi, M., Dreesen, L., Hoorens, P. R., Li, R. W., Claerebout, E., Goddeeris, B. M., Vercruysse, J., Broeck, W. V. D., & Geldhof, P. (2011) · Veterinary Research · doi:10.1186/1297-9716-42-61 · Cited by 58 · see citing works

Functional aspects of the heme bound hemophore HasA by structural analysis of various crystal forms

Arnoux, P., Haser, R., Izadi‐Pruneyre, N., Lecroisey, A., & Czjzek, M. (2000) · Proteins Structure Function and Bioinformatics · doi:10.1002/1097-0134(20001101)41:2 · Cited by 43 · see citing works

Overexpression of STIM1 in neurons in mouse brain improves contextual learning and impairs long-term depression

Majewski, Ł., Maciąg, F., Boguszewski, P. M., Wasilewska, I., Wiera, G., Wójtowicz, T., Mozrzymas, J. W., & Kuźnicki, J. (2016) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2016.11.025 · Cited by 43 · see citing works

Origin and Spread of Goat Pastoralism

Pereira, F., & Amorim, A. (2010) · Encyclopedia of Life Sciences · doi:10.1002/9780470015902.a0022864 · Cited by 39 · see citing works

Alpine ibex Capra ibex ibex x domestic goat C. aegagrus domestica hybrids in a restricted area of southern Switzerland

Giacometti, M., Roganti, R., Tann, D. D., Stahlberger‐Saitbekova, N., & Obexer‐Ruff, G. (2004) · Wildlife Biology · doi:10.2981/wlb.2004.018 · Cited by 32 · see citing works

Pace and process in the emergence of animal husbandry in Neolithic Southwest Asia

Arbuckle, B. S. (2014) · Cited by 32 · see citing works

History and development of research on wildlife parasites in southern Africa, with emphasis on terrestrial mammals, especially ungulates

Junker, K., Horak, I. G., & Penzhorn, B. (2014) · International Journal for Parasitology Parasites and Wildlife · doi:10.1016/j.ijppaw.2014.12.003 · Cited by 23 · see citing works

Evidence for Introgressive Hybridization of Captive Markhor (Capra falconeri) with Domestic Goat: Cautions for Reintroduction

Hammer, S. E., Schwammer, H. M., & Suchentrunk, F. (2008) · Biochemical Genetics · doi:10.1007/s10528-008-9145-y · Cited by 20 · see citing works

Histochemical study of the effects on abomasal mucins of Haemonchus contortus or Teladorsagia circumcincta infection in lambs

Simpson, H. V., Umair, S., Hoang, V. C., & Savoian, M. S. (2016) · Veterinary Parasitology · doi:10.1016/j.vetpar.2016.06.026 · Cited by 16 · see citing works

Ribonucleotide reductase subunit r1: A gene conferring sensitivity to valproic acid-induced neural tube defects in mice

Craig, J. C., Bennett, G. D., Miranda, R. C., Mackler, S. A., & Finnell, R. H. (2000) · Teratology · doi:10.1002/(sici)1096-9926(200004)61:4 · Cited by 15 · see citing works

Eleutheroside B1 mediates its anti-influenza activity through POLR2A and N-glycosylation

Yan, W., Zheng, C., He, J., Zhang, W., Huang, X., Li, X., Wang, Y., & Wang, X. (2018) · International Journal of Molecular Medicine · doi:10.3892/ijmm.2018.3863 · Cited by 14 · see citing works

Screening of Pig (Sus scrofa) Bactericidal Permeability-Increasing Protein (BPI) Gene as Marker for Disease Resistance

Miguel, M. A., & Mingala, C. N. (2018) · Animal Biotechnology · doi:10.1080/10495398.2018.1450266 · Cited by 6 · see citing works

Sequencing primers and SNPs for rapidly evolving reproductive loci in endangered ibex and their kin (Bovidae, Capra spp.)

Jordan, S., Miquel, C., Taberlet, P., & Luikart, G. (2006) · Molecular Ecology Notes · doi:10.1111/j.1471-8286.2006.01340.x · Cited by 3 · see citing works

P4‐246: Analysis of two immune function genes (CR1 and CD2AP) in Alzheimer's disease in two large Canadian cohorts

Omoumi, A., Fok, A., & Hsiung, G. R. (2012) · Alzheimer s & Dementia · doi:10.1016/j.jalz.2012.05.2110 · Cited by 1 · see citing works

Untitled work

Yang, D. Y. (1998) · doi:10.1002/(sici)1096-8644(199804)105:4

Whole-Genome Resequencing of Worldwide Wild and Domestic Sheep Elucidates Genetic Diversity, Introgression, and Agronomically Important Loci

Lv, F., Cao, Y.-H., Liu, G., Luo, L.-Y., Lu, R., Liu, M., Li, W., Zhou, P., Wang, X., Shen, M., et al. (2021) · Molecular Biology and Evolution · doi:10.1093/molbev/msab353 · Cited by 183 · see citing works

Herded and hunted goat genomes from the dawn of domestication in the Zagros Mountains

Daly, K. G., Mattiangeli, V., Hare, A. J., Davoudi, H., Fathi, H., Doost, S. B., Amiri, S., Khazaeli, R., Decruyenaere, D., Nokandeh, J., et al. (2021) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2100901118 · Cited by 106 · see citing works

Whole-genome sequence analysis unveils different origins of European and Asiatic mouflon and domestication-related genes in sheep

Chen, Z., Xu, Y., Xie, X.-L., Wang, D., Aguilar‐Gómez, D., Liu, G., Li, X., Esmailizadeh, A., Rezaei, V., Kantanen, J., et al. (2021) · Communications Biology · doi:10.1038/s42003-021-02817-4 · Cited by 89 · see citing works

Genome-scale sequencing and analysis of human, wolf, and bison DNA from 25,000-year-old sediment

Gelabert, P., Sawyer, S., Bergström, A., Margaryan, A., Collin, T. C., Meshveliani, T., Belfer‐Cohen, A., Lordkipanidze, D., Jakeli, N., Matskevich, Z., et al. (2021) · Current Biology · doi:10.1016/j.cub.2021.06.023 · Cited by 77 · see citing works

The genomic history and global expansion of domestic donkeys

Todd, E. T., Tonasso‐Calvière, L., Chauvey, L., Schiavinato, S., Fages, A., Seguin‐Orlando, A., Clavel, P., Khan, N., Pérez-Pardal, L., Rosa, L. P., et al. (2022) · Science · doi:10.1126/science.abo3503 · Cited by 80 · see citing works

Genome-wide comparative analyses reveal selection signatures underlying adaptation and production in Tibetan and Poll Dorset sheep

Zhang, Y., Xue, X., Liu, Y., Abied, A., Ding, Y., Zhao, S., Wang, W., Ma, L., Guo, J., Guan, W., et al. (2021) · Scientific Reports · doi:10.1038/s41598-021-81932-y · Cited by 64 · see citing works

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Cai, Y., Fu, W., Cai, D., Heller, R., Zheng, Z., Wen, J., Li, H., Wang, X., Alshawi, A., Sun, Z., et al. (2020) · Molecular Biology and Evolution · doi:10.1093/molbev/msaa103 · Cited by 60 · see citing works

Large-scale genomic analysis reveals the genetic cost of chicken domestication

Wang, M., Zhang, J.-J., Guo, X., Li, M., Meyer, R. S., Ashari, H., Zheng, Z.-Q., Wang, S., Peng, M., Jiang, Y., et al. (2021) · BMC Biology · doi:10.1186/s12915-021-01052-x · Cited by 58 · see citing works

Markhor-derived Introgression of a Genomic Region Encompassing PAPSS2 Confers High-altitude Adaptability in Tibetan Goats

Li, C., Wu, Y., Chen, B., Cai, Y., Guo, J., Leonard, A. S., Kalds, P., Zhou, S., Zhang, J., Zhou, P., et al. (2022) · Molecular Biology and Evolution · doi:10.1093/molbev/msac253 · Cited by 59 · see citing works

A Hu sheep genome with the first ovine Y chromosome reveal introgression history after sheep domestication

Li, R., Yang, P., Li, M., Fang, W., Yue, X., Nanaei, H. A., Gan, S., Du, D., Cai, Y., Dai, X., et al. (2020) · Science China Life Sciences · doi:10.1007/s11427-020-1807-0 · Cited by 56 · see citing works

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Passamonti, M. M., Somenzi, E., Barbato, M., Chillemi, G., Colli, L., Joost, S., Milanesi, M., Negrini, R., Santini, M., Vajana, E., et al. (2021) · Animals · doi:10.3390/ani11102833 · Cited by 60 · see citing works

The role of goats in the world: Society, science, and sustainability

Lu, C. D. (2023) · Small Ruminant Research · doi:10.1016/j.smallrumres.2023.107056 · Cited by 52 · see citing works

The neural crest cell hypothesis: no unified explanation for domestication

Johnsson, M., Henriksen, R., & Wright, D. (2021) · Genetics · doi:10.1093/genetics/iyab097 · Cited by 51 · see citing works

Enhancer-promoter interaction maps provide insights into skeletal muscle-related traits in pig genome

Li, J., Xiang, Y., Zhang, L., Qi, X., Zheng, Z., Zhou, P., Tang, Z., Jin, Y., Zhao, Q., Fu, Y., et al. (2022) · BMC Biology · doi:10.1186/s12915-022-01322-2 · Cited by 51 · see citing works

Structural variant landscapes reveal convergent signatures of evolution in sheep and goats

Yang, J. H., Wang, D.-F., Huang, J.-H., Zhu, Q., Luo, L.-Y., Lu, R., Xie, X.-L., Salehian-Dehkordi, H., Esmailizadeh, A., Liu, G. E., et al. (2024) · Genome biology · doi:10.1186/s13059-024-03288-6 · Cited by 49 · see citing works

SNP-Based Genotyping Provides Insight Into the West Asian Origin of Russian Local Goats

Deniskova, T. E., Dotsev, A. V., Selionova, M. I., Reyer, H., Sölkner, J., Сержевна, Ф. М., Aybazov, A.-M. M., Wimmers, K., Brem, G., & Zinovieva, N. A. (2021) · Frontiers in Genetics · doi:10.3389/fgene.2021.708740 · Cited by 37 · see citing works

Runs of homozygosity in Swiss goats reveal genetic changes associated with domestication and modern selection

Signer‐Hasler, H., Henkel, J., Bangerter, E., Bulut, Z., Drögemüller, C., Leeb, T., & Flury, C. (2022) · Genetics Selection Evolution · doi:10.1186/s12711-022-00695-w · Cited by 37 · see citing works

Long divergent haplotypes introgressed from wild sheep are associated with distinct morphological and adaptive characteristics in domestic sheep

Cheng, H., Zhang, Z., Wen, J., Lenstra, J. A., Heller, R., Cai, Y., Guo, Y., Li, M., Li, R., Li, W., et al. (2023) · PLoS Genetics · doi:10.1371/journal.pgen.1010615 · Cited by 37 · see citing works

Genome-Wide Estimates of Runs of Homozygosity, Heterozygosity, and Genetic Load in Two Chinese Indigenous Goat Breeds

Li, G., Tang, J., Huang, J., Jiang, Y., Yin, F., Wang, X., & Ren, J. (2022) · Frontiers in Genetics · doi:10.3389/fgene.2022.774196 · Cited by 36 · see citing works

Bronze Age cheese reveals human-Lactobacillus interactions over evolutionary history

Liu, Y., Miao, B., Li, W., Hu, X., Bai, F., Abuduresule, Y., Liu, Y., Zheng, Z., Wang, W., Chen, Z., et al. (2024) · Cell · doi:10.1016/j.cell.2024.08.008 · Cited by 35 · see citing works

Genomic analysis of indigenous goats in Southwest Asia reveals evidence of ancient adaptive introgression related to desert climate

Nanaei, H. A., 西北农林科技大学动物科技学院, 陕. 杨. 7., Cai, Y., Alshawi, A., Wen, J., Hussain, T., Fu, W., Xu, N., Essa, A., Lenstra, J. A., et al. (2022) · 动物学研究 · doi:10.24272/j.issn.2095-8137.2022.242 · Cited by 36 · see citing works

Conservation and Selection of Genes Related to Environmental Adaptation in Native Small Ruminant Breeds: A Review

Demir, E., Ceccobelli, S., Bilginer, Ü., Pasquini, M., Attard, G., & Karslı, T. (2022) · Ruminants · doi:10.3390/ruminants2020017 · Cited by 31 · see citing works

Metabolic pathways associated with Firmicutes prevalence in the gut of multiple livestock animals and humans

Dias, B. D. C., Lamarca, A. P., Machado, D. T., Klôh, V., de Carvalho, F. M., & de Vasconcelos, A. T. R. (2025) · Animal Microbiome · doi:10.1186/s42523-025-00379-y · Cited by 31 · see citing works

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Tan, X., Qi, J., Liu, Z., Fan, P., Liu, G., Zhang, L., Shen, Y., Li, J., Roos, C., Zhou, X., et al. (2023) · Molecular Biology and Evolution · doi:10.1093/molbev/msad229 · Cited by 35 · see citing works

Genetic advancements and future directions in ruminant livestock breeding: from reference genomes to multiomics innovations

Xu, S., Akhatayeva, Z., Liu, J., Feng, X., Yu, Y., Badaoui, B., Esmailizadeh, A., Kantanen, J., Amills, M., Lenstra, J. A., et al. (2024) · Science China Life Sciences · doi:10.1007/s11427-024-2744-4 · Cited by 29 · see citing works

Telomere-to-telomere genome assembly of a male goat reveals variants associated with cashmere traits

Wu, H. C., Luo, L.-Y., Zhang, Y., Zhang, C.-Y., Huang, J.-H., Mo, D.-X., Zhao, L.-M., Wang, Z., Wang, Y., Hehua, E., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-54188-z · Cited by 26 · see citing works

Geographical contrasts of Y‐chromosomal haplogroups from wild and domestic goats reveal ancient migrations and recent introgressions

Nijman, I. J., Rosen, B. D., Bardou, P., Faraut, T., Cumer, T., Daly, K. G., Zheng, Z., Cai, Y., Nanaei, H. A., Kul, B. Ç., et al. (2022) · Molecular Ecology · doi:10.1111/mec.16579 · Cited by 26 · see citing works

Genetic diversity and signatures of selection in BoHuai goat revealed by whole-genome sequencing

Yao, Z., Zhang, S., Wang, X., Guo, Y., Xin, X., Zhang, Z., Xu, Z., Wang, E., Jiang, Y., & Huang, Y. (2023) · BMC Genomics · doi:10.1186/s12864-023-09204-9 · Cited by 26 · see citing works

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Magoro, A. M., Mtileni, B. J., Hadebe, K., & Zwane, A. A. (2022) · Animals · doi:10.3390/ani12233353 · Cited by 25 · see citing works

GGVD: A goat genome variation database for tracking the dynamic evolutionary process of selective signatures and ancient introgressions

Fu, W., Wang, R., Yu, J., Hu, D., Cai, Y., Shao, J., & Jiang, Y. (2021) · Journal of genetics and genomics/Journal of Genetics and Genomics · doi:10.1016/j.jgg.2021.03.003 · Cited by 25 · see citing works

Domestication of farmed fish via the attenuation of stress responses mediated by the hypothalamus–pituitary–inter-renal endocrine axis

Lu, Y., Shi, C., Jin, X., He, J., & Yin, Z. (2022) · Frontiers in Endocrinology · doi:10.3389/fendo.2022.923475 · Cited by 25 · see citing works

Design and characterization of a high-resolution multiple-SNP capture array by target sequencing for sheep

Guo, Y., Bai, F., Wang, J., Fu, S., Zhang, Y., Liu, X., Zhang, Z., Shao, J., Li, R., Wang, F., et al. (2022) · Journal of Animal Science · doi:10.1093/jas/skac383 · Cited by 25 · see citing works

Demographic history and genomic consequences of 10,000 generations of isolation in a wild mammal

Wang, X., Peischl, S., & Heckel, G. (2023) · Current Biology · doi:10.1016/j.cub.2023.04.042 · Cited by 25 · see citing works

Genomic Inbreeding and Runs of Homozygosity Analysis of Cashmere Goat

Zhao, Q., Chang, H., Chen, Q., Su, Y., Zhang, Y., Wang, R., Su, R., Xu, H., Liu, S., Ma, Y., et al. (2024) · Animals · doi:10.3390/ani14081246 · Cited by 26 · see citing works

A comprehensive review of livestock development: insights into domestication, phylogenetics, diversity, and genomic advances

Nayak, S. S., Rajawat, D., Jain, K., Sharma, A., Gondro, C., Tarafdar, A., Dutt, T., & Panigrahi, M. (2024) · Mammalian Genome · doi:10.1007/s00335-024-10075-y · Cited by 28 · see citing works

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Chen, Q., Chai, Y., Zhang, W., Cheng, Y., Zhang, Z., Zhang, Z., Chen, S., Man, C., Du, L., Zhang, W., et al. (2022) · Genes · doi:10.3390/genes13091539 · Cited by 26 · see citing works

Whole genome sequencing of simmental cattle for SNP and CNV discovery

Sun, T., Pei, S., Liu, Y., Hanif, Q., Xu, H., Chen, N., Lei, C., & Yue, X. (2023) · BMC Genomics · doi:10.1186/s12864-023-09248-x · Cited by 23 · see citing works

Building blocks of consciousness: Revealing the shared, hidden depths of our biological heritage

van den Heever, J. A., & Jones, C. (2020) · HTS Teologiese Studies / Theological Studies · doi:10.4102/hts.v76i1.6055 · Cited by 22 · see citing works

Out of the Shadows: Reestablishing the Eastern Fertile Crescent as a Center of Agricultural Origins: Part 2

Zeder, M. A. (2024) · Journal of Archaeological Research · doi:10.1007/s10814-024-09198-2 · Cited by 22 · see citing works

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Пискунов, А. К., Mukhina, V., Воронкова, В. Н., Voronkova, V., & Пискунов, А. К. (2022) · Animals · doi:10.3390/ani12030221 · Cited by 22 · see citing works

Genetic Diversity and Selection Signatures in Jianchang Black Goats Revealed by Whole-Genome Sequencing Data

Sun, X., Guo, J., Li, L., Zhong, T., Wang, L., Zhan, S., Lü, J., Wang, D., Dai, D., Liu, G. E., et al. (2022) · Animals · doi:10.3390/ani12182365 · Cited by 22 · see citing works

Whole-genome resequencing of Dorper and Hu sheep to reveal selection signatures associated with important traits

Lv, X., Chen, W., Wang, S., Cao, X., Yuan, Z., Getachew, T., Mwacharo, J. M., Haile, A., & Sun, W. (2022) · Animal Biotechnology · doi:10.1080/10495398.2022.2127409 · Cited by 22 · see citing works

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Wu, J., Liu, Y., & Zhao, Y. (2021) · Frontiers in Genetics · doi:10.3389/fgene.2021.639877 · Cited by 21 · see citing works

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Robin, M., Ferrari, G., Akgül, G., Muenger, X., von Seth, J., Schuenemann, V. J., Dalén, L., & Grossen, C. (2022) · Molecular Ecology · doi:10.1111/mec.16503 · Cited by 23 · see citing works

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Cortés, O., Cañón, J., & Gama, L. T. (2022) · Ruminants · doi:10.3390/ruminants2040032 · Cited by 20 · see citing works

Genome-wide detection of selective signals for fecundity traits in goats (Capra hircus)

Wang, J., Li, Z.-D., Zheng, L.-Q., Zhang, T., Shen, W., & Lei, C. (2022) · Gene · doi:10.1016/j.gene.2022.146221 · Cited by 19 · see citing works

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Kichamu, N., Astuti, P. K., Wanjala, G., Strausz, P., Bagi, Z., & Kusza, S. (2024) · Biology · doi:10.3390/biology13060419 · Cited by 18 · see citing works

Whole genome and transcriptome analyses in dairy goats identify genetic markers associated with high milk yield

Zhao, J., Shi, C., Kamalibieke, J., Gong, P., Mu, Y., Zhu, L., Lv, X., Wang, W., & Luo, J. (2024) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2024.139192 · Cited by 18 · see citing works

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Manunza, A., Ramírez-Díaz, J., Sayre, B. L., Cozzi, P., Bobbo, T., Deniskova, T. E., Dotsev, A. V., Zinovieva, N. A., & Stella, A. (2023) · Scientific Reports · doi:10.1038/s41598-023-27490-x · Cited by 17 · see citing works

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Manunza, A., Ramírez-Díaz, J., Cozzi, P., Lazzari, B., Tosser‐Klopp, G., Servin, B., Johansson, A. M., Grøva, L., Berg, P., Våge, D. I., et al. (2023) · Scientific Reports · doi:10.1038/s41598-023-48005-8 · Cited by 17 · see citing works

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Pogorevc, N., Dotsev, A. V., Upadhyay, M. R., Sandoval‐Castellanos, E., Hannemann, E., Simčić, M., Antoniou, A., Papachristou, D., Koutsouli, P., Rahmatalla, S. A., et al. (2023) · Molecular Ecology · doi:10.1111/mec.17190 · Cited by 16 · see citing works

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Zhang, C., Nanaei, H. A., Negari, N. J., Roudbar, M. A., Ghanatsaman, Z. A., Niyazbekova, Z., & Yang, X. (2024) · BMC Genomics · doi:10.1186/s12864-024-10387-y · Cited by 15 · see citing works

Identification of Genomic Characteristics and Selective Signals in a Du’an Goat Flock

Chen, Q., Wang, Z., Sun, J., Huang, Y., Hanif, Q., Liao, Y., & Lei, C. (2020) · Animals · doi:10.3390/ani10060994 · Cited by 15 · see citing works

Deletion mutation within the goat PPP3CA gene identified by GWAS significantly affects litter size

Bai, Y., Li, J., Zhu, H., Liu, J., Dong, S., Li, L., Qu, L., Chen, H., Song, X., & Lan, X. (2021) · Reproduction Fertility and Development · doi:10.1071/rd20337 · Cited by 15 · see citing works

Selection at the GSDMC locus in horses and its implications for human mobility

Liu, X., Jia, Y., Pan, J., Zhang, Y., Gong, Y., Wang, X., Ma, Y., Álvarez, N., Jiang, L., & Orlando, L. (2025) · Science · doi:10.1126/science.adp4581 · Cited by 14 · see citing works

Dairying and the evolution and consequences of lactase persistence in humans

Stock, J. T., & Wells, J. C. K. (2023) · Animal Frontiers · doi:10.1093/af/vfad022 · Cited by 15 · see citing works

Investigating the footprint of post-domestication dispersal on the diversity of modern European, African and Asian goats

Petretto, E., Dettori, M. L., Luigi‐Sierra, M. G., Noce, A., Pazzola, M., Vacca, G. M., Molina, A., Martínez, A. M., Goyache, F., Carolan, S., et al. (2024) · Genetics Selection Evolution · doi:10.1186/s12711-024-00923-5 · Cited by 13 · see citing works

Convergent molecular evolution of thermogenesis and circadian rhythm in Arctic ruminants

Li, M., Li, X., Wu, Z., Zhang, G., Wang, N., Dou, M., Liu, S., Yang, C., Meng, G., Sun, H., et al. (2023) · Proceedings of the Royal Society B: Biological Sciences · doi:10.1098/rspb.2023.0538 · Cited by 12 · see citing works

The assembly of caprine Y chromosome sequence reveals a unique paternal phylogenetic pattern and improves our understanding of the origin of domestic goat

Xiao, C., Li, J., Xie, T., Chen, J., Zhang, S., Elaksher, S. H., Jiang, F., Jiang, Y., Zhang, L., Zhang, W., et al. (2021) · Ecology and Evolution · doi:10.1002/ece3.7611 · Cited by 12 · see citing works

Genomic insights into the conservation and population genetics of two Chinese native goat breeds

Wang, X., Li, G., Jiang, Y., Tang, J., Yin, F., & Ren, J. (2022) · Journal of Animal Science · doi:10.1093/jas/skac274 · Cited by 12 · see citing works

Association between INHA gene polymorphisms and litter size in Hainan black goats

Bian, Z., Li, K., Chen, S., Man, C., Wang, F., & Li, L. (2023) · PeerJ · doi:10.7717/peerj.15381 · Cited by 12 · see citing works

Investigation of mitochondrial DNA genetic diversity and phylogeny of goats worldwide

Guo, Y., Gong, Y., He, Y., Bai-gao, Y., Zhang, W., Bo-er, C., Huang, Y.-F., Yong-ju, Z., Zhang, D., Yue-hui, M., et al. (2022) · Journal of Integrative Agriculture · doi:10.1016/s2095-3119(21)63882-0 · Cited by 11 · see citing works

Whole-genome selective scans detect genes associated with important phenotypic traits in goat (Capra hircus)

Wan, X., Jing, J.-N., Wang, D., & Lv, F. (2023) · Frontiers in Genetics · doi:10.3389/fgene.2023.1173017 · Cited by 11 · see citing works

Genome-Wide Association and Pathway Analysis of Carcass and Meat Quality Traits in Karachai Young Goats

Selionova, M. I., Aibazov, M., Sermyagin, А. А., Belous, A. A., Deniskova, T. E., Mamontova, T., Zharkova, E. K., & Zinovieva, N. A. (2023) · Animals · doi:10.3390/ani13203237 · Cited by 11 · see citing works

Genomics of Adaptations in Ungulates

Chebii, V. J., Mpolya, E. A., Muchadeyi, F. C., & Entfellner, J.-B. D. (2021) · Animals · doi:10.3390/ani11061617 · Cited by 11 · see citing works

A novel lineage of the Capra genus discovered in the Taurus Mountains of Turkey using ancient genomics

Daly, K. G., Arbuckle, B. S., Rossi, C., Mattiangeli, V., Lawlor, P. A., Mashkour, M., Sauer, E. W., Lesur, J., Atıcı, L., Erek, C. M., et al. (2022) · eLife · doi:10.7554/elife.82984 · Cited by 11 · see citing works

Detection of whole genome selection signatures of Pakistani Teddy goat

Saif, R., Henkel, J., Mahmood, T., Ejaz, A., Ahmad, F., & Zia, S. (2021) · Molecular Biology Reports · doi:10.1007/s11033-021-06726-x · Cited by 12 · see citing works

Chromosome-level genome assembly of the cashmere goat

Wang, Z., Lv, Q., Li, W., Huang, W., Gong, G., Yan, X., Liu, B., Chen, O., Wang, N., Zhang, Y., et al. (2024) · Scientific Data · doi:10.1038/s41597-024-03932-7 · Cited by 11 · see citing works

A missense mutation in <i>RRM1</i> contributes to animal tameness

Dou, M., Li, M., Zheng, Z., Chen, Q., Wu, Y., Wang, J., Shan, H., Wang, F., Dai, X., Li, Y., et al. (2023) · Science Advances · doi:10.1126/sciadv.adf4068 · Cited by 10 · see citing works

Genomic and Molecular Mechanisms of Goat Environmental Adaptation

Lu, Y. C., Ma, R., Li, D., Gao, Y., Sheng, Z., Shi, J., Peng, Y., Gao, Z., Deng, W., & He, X. (2025) · Biology · doi:10.3390/biology14060654 · Cited by 10 · see citing works

Telomere-to-telomere genome assembly of a male pig provides insight into population structure and selection for body stature

Luo, Y.-B., Huang, N., Zha, C.-W., Yang, L.-X., Xue, P., Xu, Q., Yang, X.-Y., Zhang, L., Wang, Y.-B., Chao, Z., et al. (2025) · Nature Genetics · doi:10.1038/s41588-025-02433-6 · Cited by 11 · see citing works

Resequencing of a Pekin duck breeding population provides insights into the genomic response to short-term artificial selection

Yu, S., Liu, Z., Li, M., Zhou, D., Hua, P., Cheng, H., Fan, W., Xu, Y., Liu, D., Liang, S., et al. (2023) · GigaScience · doi:10.1093/gigascience/giad016 · Cited by 10 · see citing works

The goat pan-genome reveals patterns of gene loss during domestication

Liu, J., Shi, Y., Mo, D.-X., Luo, L., Xu, S., & Lv, F. (2024) · Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology · doi:10.1186/s40104-024-01092-7 · Cited by 10 · see citing works

Convergent Genomic Signatures of Cashmere Traits: Evidence for Natural and Artificial Selection

Wang, W., Li, Z., Xie, G., Li, X., Wu, Z., Li, M., Liu, A., Xiong, Y., & Wang, Y. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms24021165 · Cited by 10 · see citing works

Whole‐genome resequencing reveals diversity and selective signals in the Wuxue goat

Li, C., Wang, X., Li, H., Ahmed, Z., Luo, Y., Qin, M., Yang, Q., Long, Z., Lei, C., & Yi, K. (2024) · Animal Genetics · doi:10.1111/age.13437 · Cited by 9 · see citing works

Deep Ancestral Introgressions between Ovine Species Shape Sheep Genomes via Argali-Mediated Gene Flow

Lv, F., Wang, D., Zhao, S., Lv, X., Sun, W., Nielsen, R., & Li, M.-H. (2024) · Molecular Biology and Evolution · doi:10.1093/molbev/msae212 · Cited by 9 · see citing works

Metabolome genome-wide association analyses identify a splice mutation in AADAT affects lysine degradation in duck skeletal muscle

Liu, D., Fan, W., Yang, Y., Guo, Z., Xu, Y., Hu, J., Liu, T., Yu, S., Zhang, H., Tang, J., et al. (2025) · Science China Life Sciences · doi:10.1007/s11427-024-2882-x · Cited by 9 · see citing works

Genomic Analyses Reveal the Evolving Characteristics of Intestinal Metaplasia and Gastric Cancer

Xu, X., Yan, C., Bian, L., Li, Z., Yu, Y., Zhu, X., Gao, Y., Xu, H., Li, F., Liu, Y., et al. (2025) · Cancer Research · doi:10.1158/0008-5472.can-24-4065 · Cited by 10 · see citing works

Analysis of World-Scale Mitochondrial DNA Reveals the Origin and Migration Route of East Asia Goats

Peng, W., Zhang, Y., Gao, L., Feng, C., Yang, Y., Li, B., Wu, L., Wu, A., Wang, S., Ren, X., et al. (2022) · Frontiers in Genetics · doi:10.3389/fgene.2022.796979 · Cited by 9 · see citing works

Full‐length transcriptome sequencing reveals extreme incomplete annotation of the goat genome

Zhang, H., Liang, Y., Chen, S., Xuan, Z., Jiang, Y., Li, R., & Cao, Y. (2023) · Animal Genetics · doi:10.1111/age.13311 · Cited by 9 · see citing works

Analysis of genomic copy number variations through whole-genome scan in Chinese Qaidam cattle

Liu, Y., Mu, Y., Wang, W., Ahmed, Z., Wei, X., Lei, C., & Ma, Z. (2023) · Frontiers in Veterinary Science · doi:10.3389/fvets.2023.1148070 · Cited by 9 · see citing works

Mitochondrial DNA analyses revealed distinct lineages in an alpine mammal, Siberian ibex ( Capra sibirica ) in Xinjiang, China

Wang, R., Dong, P., Hirata, D., & Abduriyim, S. (2023) · Ecology and Evolution · doi:10.1002/ece3.10288 · Cited by 9 · see citing works

Complete Genomic Landscape Reveals Hidden Evolutionary History and Selection Signature in Asian Water Buffaloes ( Bubalus bubalis )

Si, J., Dai, D., Gorkhali, N. A., Wang, M., Wang, S., Sapkota, S., Kadel, R. C., Sadaula, A., Dhakal, A., Faruque, M. O., et al. (2024) · Advanced Science · doi:10.1002/advs.202407615 · Cited by 8 · see citing works

Whole-Genome Selective Scans Detect Genes Associated with Cashmere Traits and Climatic Adaptation in Cashmere Goats (Capra hircus) in China

Dan, H., Zhong, H., Akhatayeva, Z., Lin, K., & Xu, S. (2025) · Genes · doi:10.3390/genes16030292 · Cited by 8 · see citing works

Whole-genome resequencing reveals positive selection and introgression signatures and genetic loci associated with early puberty traits in Chinese indigenous pigs

Cao, M., Yuan, T., Li, D., Wang, Y., Zhang, L., Sun, J., Lv, G., Ding, R., & Yu, T. (2025) · Genetics Selection Evolution · doi:10.1186/s12711-025-00975-1 · Cited by 10 · see citing works

Anthropogenic events and responses to environmental stress are shaping the genomes of Ethiopian indigenous goats

Belay, S., Belay, G., Nigussie, H., Ahbara, A., Tijjani, A., Dessie, T., Tarekegn, G. M., Han, J., Mor, S. M., Woldekiros, H. S., et al. (2024) · Scientific Reports · doi:10.1038/s41598-024-65303-x · Cited by 8 · see citing works

Genome-Wide Selective Analysis of Boer Goat to Investigate the Dynamic Heredity Evolution under Different Stages

Yuan, Y., Zhang, W., Liu, C., He, Y., Zhang, H., Xu, L., Yang, B., Zhao, Y., Ma, Y., Chu, M., et al. (2022) · Animals · doi:10.3390/ani12111356 · Cited by 11 · see citing works

Genomic insights into the population history of fat-tailed sheep and identification of two mutations that contribute to fat tail adipogenesis

Jin, M., Liu, G., Liu, E., Wang, L., Jiang, Y., Zheng, Z., Lu, J., Lu, Z., Ma, Y., Liu, Y., et al. (2025) · Journal of Advanced Research · doi:10.1016/j.jare.2025.05.011 · Cited by 7 · see citing works

Genetic diversity, population structure and kinship relationships highlight the environmental influence on Uganda’s indigenous goat populations

Nantongo, Z., Birungi, J., Opiyo, S. O., Shirima, G. M., Mugerwa, S., Mutai, C., Kyalo, M., Munishi, L. K., Agaba, M. K., & Mrode, R. (2024) · Frontiers in Genetics · doi:10.3389/fgene.2024.1385611 · Cited by 6 · see citing works

Recent advances in genomic studies for domestication and genetic improvement of traits in goats

Akhatayeva, Z., Dan, H., Salehian-Dehkordi, H., Seiteuov, T. K., Халмурзаевич, А. А., Aitjanov, R., Lin, K., & Xu, S. (2025) · Journal of Integrative Agriculture · doi:10.1016/j.jia.2025.07.020 · Cited by 6 · see citing works

Whole genome sequencing revealed genetic structure, domestication, and selection of Chinese indigenous ducks

Huang, M., Zhou, J., Zhu, Y., Luo, K., Zheng, S., Tang, H., Wu, Y., Xuan, R., Huang, Y., Li, J., et al. (2025) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2025.141724 · Cited by 6 · see citing works

Analysis of the compatibility of the urban network with the distribution of public facilities and trade in the city of Batna (Algeria)

Bendib, A. (2021) · GeoJournal · doi:10.1007/s10708-021-10373-x · Cited by 6 · see citing works

Lactation Characteristics in Alpine and Nera di Verzasca Goats in Northern Italy: A Statistical Bayesian Approach

Agradi, S., Gazzonis, A. L., Curone, G., Faustini, M., Draghi, S., Brecchia, G., Vigo, D., Manfredi, M. T., Zanzani, S. A., Pulinas, L., et al. (2021) · Applied Sciences · doi:10.3390/app11167235 · Cited by 6 · see citing works

Whole-genome sequencing reveals selection signals among Chinese, Pakistani, and Nepalese goats

Li, Y., Gong, Y., Zhang, Z., Li, L., Liu, X., He, X., Zhao, Q., Pu, Y., Ma, Y., & Jiang, L. (2023) · Journal of genetics and genomics/Journal of Genetics and Genomics · doi:10.1016/j.jgg.2023.01.010 · Cited by 6 · see citing works

Population structure, selection signal and introgression of gamecocks revealed by whole genome sequencing

Xu, N., Zhang, L., Chen, F., Feng, Z., Zheng, J., Li, D., Zhao, Y., & Kang, X. (2025) · Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology · doi:10.1186/s40104-025-01154-4 · Cited by 5 · see citing works

The impact of genetic selection for increased production on fitness traits of small ruminants

Visser, C. (2025) · Small Ruminant Research · doi:10.1016/j.smallrumres.2025.107491 · Cited by 5 · see citing works

Genetic diversity of goats in East Java through analysis of the cytochrome B and cytochrome oxidase I genes in mitochondrial DNA

Suyadi, S., Murtika, I. L., Susilorini, T. E., Septian, W. A., Saputra, F., & Furqon, A. (2022) · Small Ruminant Research · doi:10.1016/j.smallrumres.2022.106659 · Cited by 5 · see citing works

Analysis of the Association of Two SNPs in the Promoter Regions of the PPP2R5C and SLC39A5 Genes with Litter Size in Yunshang Black Goats

Wang, P., Li, W., Liu, Z., He, X., Rong, L., Liu, Y., & Chu, M. (2022) · Animals · doi:10.3390/ani12202801 · Cited by 6 · see citing works

Examination of Runs of Homozygosity Distribution Patterns and Relevant Candidate Genes of Potential Economic Interest in Russian Goat Breeds Using Whole-Genome Sequencing

Deniskova, T. E., Dotsev, A. V., Koshkina, O. A., Solovieva, A. D., Churbakova, N. A., Petrov, S. N., Frolov, A. N., Андреевич, П. С., Abdelmanova, A. S., Vladimirov, M. A., et al. (2025) · Genes · doi:10.3390/genes16060631 · Cited by 5 · see citing works

Haplotype Diversity of Mongolian and Tuvan Goat Breeds (Capra hircus) Based on mtDNA and Y-Chromosome Polymorphism

Воронкова, В. Н., Пискунов, А. К., Николаева, Э. А., Семина, М. Т., Konorov, E. A., & Stolpovsky, Y. A. (2021) · Russian Journal of Genetics · doi:10.1134/s102279542110015x · Cited by 5 · see citing works

New knowledge on the origin of domestication genes in goats

Livestock, C. R. P. O. (2020) · CGSPace A Repository of Agricultural Research Outputs (Consultative Group for International Agricultural Research)

Goat domestication and breeding: a jigsaw of historical, biological and molecular data with missing pieces

Amills, M., Capote, J., & Tosser‐Klopp, G. (2017) · Animal Genetics · doi:10.1111/age.12598 · Cited by 144 · see citing works

Domestication Process of the Goat Revealed by an Analysis of the Nearly Complete Mitochondrial Protein-Encoding Genes

Nomura, K., Yonezawa, T., Mano, S., Kawakami, S., Shedlock, A. M., Hasegawa, M., & Amano, T. (2013) · PLoS ONE · doi:10.1371/journal.pone.0067775 · Cited by 69 · see citing works

Whole mitochondrial genomes unveil the impact of domestication on goat matrilineal variability

Colli, L., Lancioni, H., Cardinali, I., Olivieri, A., Capodiferro, M. R., Pellecchia, M., Rzepus, M., Zamani, W., Naderi, S., Gandini, F., et al. (2015) · BMC Genomics · doi:10.1186/s12864-015-2342-2 · Cited by 86 · see citing works

Ancient goat genomes reveal mosaic domestication in the Fertile Crescent

Daly, K. G., Delser, P. M., Mullin, V. E., Scheu, A., Mattiangeli, V., Teasdale, M. D., Hare, A. J., Bürger, J., Verdugo, M. P., Collins, M. J., et al. (2018) · Science · doi:10.1126/science.aas9411 · Cited by 223 · see citing works