Diagnosis of genetic diseases in seriously ill children by rapid whole-genome sequencing and automated phenotyping and interpretation
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Automated phenotyping and interpretation of rapid whole-genome sequencing improve time to diagnosis of genetic diseases in hospitalized children.
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Inadequate funding, insufficient pediatric workforce preparation, and the high resource demands of rapid testing are substantial barriers to wide adoption.
“The lack of health care funding, the underpreparedness of the pediatric workforce, and the resource-intensive nature of rapid testing represent significant barriers to widespread adoption.”
Genomic diagnosis is especially powerful for monogenic neurodevelopmental disorders and critically ill infants.
“The power of genomic diagnosis is especially clear for those presenting with monogenic neurodevelopmental disorders and critically ill infants135,136.”
From A brief history of human disease genetics (2020) · cites this paper as [136]
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Borle, K. J., Kopac, N., Dragojlovic, N., Llorian, E. R., Friedman, J. M., Study, G., Elliott, A. M., & Lynd, L. D. (2022) · European Journal of Human Genetics · doi:10.1038/s41431-021-01017-2 · Cited by 18 · see citing works
Self-citationExome and Whole Genome Sequencing in the Neonatal Intensive Care Unit
Muriello, M. J. (2022) · Clinics in Perinatology · doi:10.1016/j.clp.2021.11.018 · Cited by 18 · see citing works
Deuitch, N. T., Lee, S. S., & Char, D. S. (2019) · Journal of Genetic Counseling · doi:10.1002/jgc4.1182 · Cited by 18 · see citing works
- Authors
- Clark, M. M., Hildreth, A., Batalov, S., Ding, Y., Chowdhury, S., Watkins, K., Ellsworth, K., Camp, B., Kint, C. I., Yacoubian, C., Farnaes, L., Bainbridge, M. N., Beebe, C., Braun, J. J. A., Bray, M., Carroll, J., Cakici, J. A., Caylor, S. A., Clarke, C., Creed, M. P., Friedman, J., Frith, A., Gain, R., Gaughran, M., George, S., Gilmer, S., Gleeson, J., Gore, J., Grunenwald, H., Hovey, R. L., Janes, M. L., Lin, K., McDonagh, P. D., McBride, K., Mulrooney, P., Nahas, S., Oh, D., Oriol, A., Puckett, L., Rady, Z., Reese, M. G., Ryu, J., Salz, L., Sanford, E., Stewart, L., Sweeney, N., Tokita, M., Van Der Kraan, L., White, S., Wigby, K., Williams, B., Wong, T., Wright, M. S., Yamada, C., Schols, P., Reynders, J., Hall, K., Dimmock, D., Veeraraghavan, N., Defay, T., & Kingsmore, S. F.
- Affiliations
- Rady Children's Institute for Genomic Medicine (US)
- University of Washington (US)
- Rady Children’s Institute for Genomic Medicine, San Diego, CA 92123, USA.
- Diploid, 3001 Leuven, Belgium.
- Clinithink Ltd., London N1 6DR, UK.
- University of California San Diego (US)
- GenomeDesigns Lab (United States) (US)
- Rady Children's Hospital-San Diego (US)
- Alexion Pharmaceuticals (United States) (US)
- University of Kansas (US)
- Tessella, Needham, MA 02494, USA.
- Illumina (United States) (US)
- Ontario Genomics (CA)
- Corresponding author
- Kingsmore, Stephen F.
- ORCID
- Clark, Michelle M.
- Hildreth, Amber
- Batalov, Sergey
- Ding, Yan
- Chowdhury, Shimul
- Watkins, Kelly
- Ellsworth, Katarzyna
- Kint, Cyrielle I.
- Yacoubian, Calum
- Farnaes, Lauge
- Bainbridge, Matthew N.
- Braun, Joshua J. A.
- Bray, Margaret
- Carroll, Jeanne
- Cakici, Julie A.
- Clarke, Christina
- Creed, Mitchell P.
- Friedman, Jennifer
- George, Shauna
- Gilmer, Sheldon
- Gleeson, Joseph
- Gore, Jeremy
- Grunenwald, Haiying
- Hovey, Raymond L.
- Janes, Marie L.
- Lin, Kejia
- Mulrooney, Patrick
- Nahas, Shareef
- Oh, Daeheon
- Oriol, Albert
- Reese, Martin G.
- Ryu, Julie
- Salz, Lisa
- Stewart, Lawrence
- Sweeney, Nathaly
- Van Der Kraan, Luca
- Wigby, Kristen
- Williams, Brett
- Reynders, John
- Hall, Kevin
- Dimmock, David
- Veeraraghavan, Narayanan
- Defay, Thomas
- Kingsmore, Stephen F.
- Venue
- Science Translational Medicine
- Published
- 2019-04-24
- Volume
- 11
- Issue
- 489
- ISSN
- 1946-6234 (ISSN-L)
- 1946-6242
- PMC
- PMC9512059
- OpenAlex
- W2942272601
- Cited by
- 300
- References
- 68
- Citations by year
- 2026: 27 · 2025: 39 · 2024: 25 · 2023: 40 · 2022: 57 · 2021: 44 · 2020: 51 · 2019: 17
- FWCI
- 25.38
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Science Translational Medicine (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- eScholarship (California Digital Library) (submittedVersion)
- Funders
- National Institutes of Health (u19hd077693, UL1TR002550, U01TR002271)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genomics and Rare Diseases
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Clinical Biochemistry › Metabolism and Genetic Disorders
- Health Sciences › Medicine › Health Informatics › Artificial Intelligence in Healthcare and Education
- Keywords
- genetic disease diagnosis, whole genome sequencing, automated phenotyping, natural language processing, electronic health records, neonatal intensive care, pediatric intensive care, critically ill infants, rapid sequencing, precision medicine
- MeSH terms
- Female, Humans, Intensive Care Units, Natural Language Processing, Retrospective Studies, Diabetic Ketoacidosis, Genomics, Electronic Health Records
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