The DOI matches its Crossref record; 67 of the 67 references it cites were found in a registry or an index.
The Human Tim/Tipin Complex Coordinates an Intra-S Checkpoint Response to UV That Slows Replication Fork Displacement
Open accessAbstract
UV-induced DNA damage stalls DNA replication forks and activates the intra-S checkpoint to inhibit replicon initiation. In response to stalled replication forks, ATR phosphorylates and activates the transducer kinase Chk1 through interactions with the mediator proteins TopBP1, Claspin, and Timeless (Tim). Murine Tim recently was shown to form a complex with Tim-interacting protein (Tipin), and a similar complex was shown to exist in human cells. Knockdown of Tipin using small interfering RNA reduced the expression of Tim and reversed the intra-S checkpoint response to UVC. Tipin interacted with replication protein A (RPA) and RPA-coated DNA, and RPA promoted the loading of Tipin onto RPA-free DNA. Immunofluorescence analysis of spread DNA fibers showed that treating HeLa cells with 2.5 J/m(2) UVC not only inhibited the initiation of new replicons but also reduced the rate of chain elongation at active replication forks. The depletion of Tim and Tipin reversed the UV-induced inhibition of replicon initiation but affected the rate of DNA synthesis at replication forks in different ways. In undamaged cells depleted of Tim, the apparent rate of replication fork progression was 52% of the control. In contrast, Tipin depletion had little or no effect on fork progression in unirradiated cells but significantly attenuated the UV-induced inhibition of DNA chain elongation. Together, these findings indicate that the Tim-Tipin complex mediates the UV-induced intra-S checkpoint, Tim is needed to maintain DNA replication fork movement in the absence of damage, Tipin interacts with RPA on DNA and, in UV-damaged cells, Tipin slows DNA chain elongation in active replicons.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“The circadian protein Tim (Timeless) -Tipin (Timeless-interacting protein) complex associates with ATR-Chk1 checkpoint proteins and plays an essential role in DDR as well [130–133].”
From Functional interplay between ATM/ATR-mediated DNA damage response and DNA repair pathways in oxidative stress (2014) · cites this paper as [131]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
1 retracted
Wang, X., Guan, J., Hu, B., Weiss, R. S., Iliakis, G. E., & Wang, Y. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh243 · Cited by 26
RetractedMolecular Mechanisms of Mammalian DNA Repair and the DNA Damage Checkpoints
Sancar, A., Lindsey-Boltz, L. A., Ünsal-Kaçmaz, K., & Linn, S. (2004) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.73.011303.073723 · Cited by 3,317
Self-citationThe XPV (xeroderma pigmentosum variant) gene encodes human DNA polymerase η
Masutani, C., Kusumoto, R., Yamada, A., Dohmae, N., Yokoi, M., Yuasa, M., Araki, M., Iwai, S., Takio, K., & Hanaoka, F. (1999) · Nature · doi:10.1038/21447 · Cited by 1,292
The ATM-Chk2-Cdc25A checkpoint pathway guards against radioresistant DNA synthesis
Falck, J., Mailand, N., Syljuåsen, R. G., Bartek, J., & Lukas, J. (2001) · Nature · doi:10.1038/35071124 · Cited by 1,085
Jackson, D., & Pombo, A. (1998) · Journal of Cell Biology · doi:10.1083/jcb.140.6.1285 · Cited by 881
Radiosensitivity in ataxia-telangiectasia: a new explanation.
Painter, R. B., & Young, B. R. (1980) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.77.12.7315 · Cited by 795
TopBP1 Activates the ATR-ATRIP Complex
Kumagai, A., Lee, J., Yoo, H. Y., & Dunphy, W. G. (2006) · Cell · doi:10.1016/j.cell.2005.12.041 · Cited by 787
Byun, T. S., Pacek, M., Yee, M.-C., Walter, J. C., & Cimprich, K. A. (2005) · Genes & Development · doi:10.1101/gad.1301205 · Cited by 767
The DNA replication checkpoint response stabilizes stalled replication forks
Lopes, M., Cotta‐Ramusino, C., Pellicioli, A., Liberi, G., Plevani, P., Muzi-Falconi, M., Newlon, C. S., & Foiani, M. (2001) · Nature · doi:10.1038/35087613 · Cited by 749
hRAD30 Mutations in the Variant Form of Xeroderma Pigmentosum
Johnson, R. E., Kondratick, C. M., Prakash, S., & Prakash, L. (1999) · Science · doi:10.1126/science.285.5425.263 · Cited by 732
Regulation of DNA replication fork progression through damaged DNA by the Mec1/Rad53 checkpoint
Tercero, J. A., & Diffley, J. F. X. (2001) · Nature · doi:10.1038/35087607 · Cited by 667
Spatial organization of the mammalian genome surveillance machinery in response to DNA strand breaks
Bekker‐Jensen, S., Lukas, C., Kitagawa, R., Melander, F., Kastan, M. B., Bártek, J., & Lukas, J. (2006) · The Journal of Cell Biology · doi:10.1083/jcb.200510130 · Cited by 647
Kraemer, K. H. (1994) · Archives of Dermatology · doi:10.1001/archderm.130.8.1018 · Cited by 571
Lopes, M., Foiani, M., & Sogo, J. M. (2006) · Molecular Cell · doi:10.1016/j.molcel.2005.11.015 · Cited by 563
The DNA damage-dependent intra–S phase checkpoint is regulated by parallel pathways
Falck, J., Petrini, J. H. J., Williams, B. R., Lukas, J., & Bartek, J. (2002) · Nature Genetics · doi:10.1038/ng845 · Cited by 392
RPA involvement in the damage-recognition and incision steps of nucleotide excision repair
He, Z., Henricksen, L. A., Wold, M. S., & Ingles, C. J. (1995) · Nature · doi:10.1038/374566a0 · Cited by 389
An ATR- and Cdc7-Dependent DNA Damage Checkpoint that Inhibits Initiation of DNA Replication
Costanzo, V., Shechter, D., Lupardus, P. J., Cimprich, K. A., Gottesman, M. E., & Gautier, J. (2003) · Molecular Cell · doi:10.1016/s1097-2765(02)00799-2 · Cited by 355
DNA damage and cell cycle checkpoints
Kaufmann, W. K., & Paules, R. S. (1996) · The FASEB Journal · doi:10.1096/fasebj.10.2.8641557 · Cited by 315
Self-citationYou, Y.-H., Lee, D.-H., Yoon, J.-H., Nakajima, S., Yasui, A., & Pfeifer, G. P. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.m107696200 · Cited by 314
Coupling of Human Circadian and Cell Cycles by the Timeless Protein
Ünsal-Kaçmaz, K., Mullen, T. E., Kaufmann, W. K., & Sancar, A. (2005) · Molecular and Cellular Biology · doi:10.1128/mcb.25.8.3109-3116.2005 · Cited by 310
Self-citationMolecular anatomy and regulation of a stable replisome at a paused eukaryotic DNA replication forkPreprint
Calzada, A., Hodgson, B., Kanemaki, M. T., Bueno, A., & Labib, K. P. M. (2005) · Genes & Development · doi:10.1101/gad.337205 · Cited by 285
Mrc1 and Tof1 Promote Replication Fork Progression and Recovery Independently of Rad53
Tourrière, H., Versini, G., Cordón-Preciado, V., Alabert, C., & Pasero, P. (2005) · Molecular Cell · doi:10.1016/j.molcel.2005.07.028 · Cited by 265
Mer, G., Bochkarev, A. V., Gupta, R., Bochkareva, E. S., Frappier, L., Ingles, C. J., Edwards, A. M., & Chazin, W. (2000) · Cell · doi:10.1016/s0092-8674(00)00136-7 · Cited by 254
Heffernan, T. P., Simpson, D. A., Frank, A. R., Heinloth, A. N., Paules, R. S., Cordeiro-Stone, M., & Kaufmann, W. K. (2002) · Molecular and Cellular Biology · doi:10.1128/mcb.22.24.8552-8561.2002 · Cited by 251
Self-citationHuman Claspin Is Required for Replication Checkpoint Control
Chini, C. C. S., & Chen, J. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m301136200 · Cited by 244
Identification of Protein Complexes Required for Efficient Sister Chromatid Cohesion
Mayer, M. L., Pot, I., Chang, M., Xu, H., Aneliunas, V., Kwok, T., Newitt, R., Aebersold, R. H., Boone, C. M., Brown, G. W., et al. (2004) · Molecular Biology of the Cell · doi:10.1091/mbc.e03-08-0619 · Cited by 235
Visualization of Altered Replication Dynamics after DNA Damage in Human Cells
Merrick, C. J., Jackson, D. A., & Diffley, J. F. X. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m400022200 · Cited by 228
Swi1 and Swi3 Are Components of a Replication Fork Protection Complex in Fission Yeast
Noguchi, E., Noguchi, C., McDonald, W. H., Yates, J. R., & Russell, P. R. (2004) · Molecular and Cellular Biology · doi:10.1128/mcb.24.19.8342-8355.2004 · Cited by 205
Claspin Operates Downstream of TopBP1 To Direct ATR Signaling towards Chk1 Activation
Liu, S., Bekker‐Jensen, S., Mailand, N., Lukas, C., Bártek, J., & Lukas, J. (2006) · Molecular and Cellular Biology · doi:10.1128/mcb.00492-06 · Cited by 196
Petermann, E., Maya‐Mendoza, A., Zachos, G., Gillespie, D. A., Jackson, D. A., & Caldecott, K. W. (2006) · Molecular and Cellular Biology · doi:10.1128/mcb.26.8.3319-3326.2006 · Cited by 181
Costanzo, V., Robertson, K. M.-P., Ying, C. Y., Kim, E., Avvedimento, E. V., Gottesman, M. E., Grieco, D., & Gautier, J. (2000) · Molecular Cell · doi:10.1016/s1097-2765(00)00063-0 · Cited by 176
Torres‐Ramos, C. A., Prakash, S., & Prakash, L. (2002) · Molecular and Cellular Biology · doi:10.1128/mcb.22.7.2419-2426.2002 · Cited by 172
Chou, D. M., & Elledge, S. J. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0609251103 · Cited by 166
Swi1 Prevents Replication Fork Collapse and Controls Checkpoint Kinase Cds1
Noguchi, E., Noguchi, C., Du, L., & Russell, P. R. (2003) · Molecular and Cellular Biology · doi:10.1128/mcb.23.21.7861-7874.2003 · Cited by 163
Human Claspin works with BRCA1 to both positively and negatively regulate cell proliferation
Lin, S.-Y., Li, K., Stewart, G. S., & Elledge, S. J. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0401847101 · Cited by 156
Mammalian TIMELESS and Tipin are Evolutionarily Conserved Replication Fork-associated Factors
Gotter, A. L., Suppa, C., & Emanuel, B. S. (2006) · Journal of Molecular Biology · doi:10.1016/j.jmb.2006.10.097 · Cited by 142
Haracska, L., Unk, I., Prakash, L., & Prakash, S. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0510924103 · Cited by 136
Nedelcheva, M. N., Roguev, A., Dolapchiev, L. B., Shevchenko, A., Taskov, H. B., Shevchenko, A., Stewart, A. F., & Stoynov, S. (2005) · Journal of Molecular Biology · doi:10.1016/j.jmb.2005.01.041 · Cited by 135
Mohanty, B. K., Bairwa, N. K., & Bastia, D. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0506540103 · Cited by 134
Yoshizawa-Sugata, N., & Masai, H. (2006) · Journal of Biological Chemistry · doi:10.1074/jbc.m605596200 · Cited by 127
Tof1p Regulates DNA Damage Responses During S Phase in Saccharomyces cerevisiae
Foss, E. J. (2001) · Genetics · doi:10.1093/genetics/157.2.567 · Cited by 126
Kaufmann, W. K., & Cleaver, J. E. (1981) · Journal of Molecular Biology · doi:10.1016/0022-2836(81)90297-7 · Cited by 121
Self-citationAten, J. A., Bakker, P. J. M., Stap, J., Boschman, G. A., & Veenhof, C. H. N. (1992) · The Histochemical Journal · doi:10.1007/bf01046839 · Cited by 118
Svoboda, D. L., & Vos, J. H. (1995) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.92.26.11975 · Cited by 111
The Role of DNA Polymerase η in Translesion Synthesis Past Platinum–DNA Adducts in Human Fibroblasts
Bassett, E., King, N. M., Bryant, M. F., Hector, S., Pendyala, L., Chaney, S. G., & Cordeiro‐Stone, M. (2004) · Cancer Research · doi:10.1158/0008-5472.can-04-1328 · Cited by 110
Self-citationMrc1 Is Required for Sister Chromatid Cohesion To Aid in Recombination Repair of Spontaneous Damage
Xu, H., Boone, C. M., & Klein, H. L. (2004) · Molecular and Cellular Biology · doi:10.1128/mcb.24.16.7082-7090.2004 · Cited by 108
Krings, G., & Bastia, D. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0406037101 · Cited by 106
Cordeiro‐Stone, M., Makhov, A. M., Zaritskaya, L., & Griffith, J. D. (1999) · Journal of Molecular Biology · doi:10.1006/jmbi.1999.2847 · Cited by 102
Self-citationLiu, P., Barkley, L. R., Day, T. A., Bi, X., Slater, D., Alexandrow, M. G., Nasheuer, H., & Vaziri, C. (2006) · Journal of Biological Chemistry · doi:10.1074/jbc.m602982200 · Cited by 102
Cell cycle control, DNA repair and initiation of carcinogenesis
Kaufmann, W. K., & Kaufman, D. G. (1993) · The FASEB Journal · doi:10.1096/fasebj.7.12.8375618 · Cited by 81
Self-citationCdc7-Dbf4 and the Human S Checkpoint Response to UVC
Heffernan, T. P., Ünsal-Kaçmaz, K., Heinloth, A. N., Simpson, D. A., Paules, R. S., Sancar, A., Cordeiro‐Stone, M., & Kaufmann, W. K. (2007) · Journal of Biological Chemistry · doi:10.1074/jbc.m611292200 · Cited by 81
Self-citationSpatial Distributions of Early and Late Replicating Chromatin in Interphase Chromosome Territories
Visser, A. E., Eils, R., Jauch, A. T., Little, G., Bakker, P. J. M., Cremer, T. J., & Aten, J. A. (1998) · Experimental Cell Research · doi:10.1006/excr.1998.4144 · Cited by 72
Critical Role for Mouse Hus1 in an S-Phase DNA Damage Cell Cycle Checkpoint
Weiss, R. S., Leder, P., & Vaziri, C. (2003) · Molecular and Cellular Biology · doi:10.1128/mcb.23.3.791-803.2003 · Cited by 71
Kulaksiz-Erkmen, G., Reardon, J. T., & Sancar, A. (2005) · Molecular and Cellular Biology · doi:10.1128/mcb.25.22.9784-9792.2005 · Cited by 71
Self-citationRecruitment of DNA damage checkpoint proteins to damage in transcribed and nontranscribed sequences
Jiang, G., & Sancar, A. (2006) · Molecular and Cellular Biology · doi:10.1128/mcb.26.1.39-49.2006 · Cited by 70
Self-citationGotter, A. L. (2003) · Journal of Molecular Biology · doi:10.1016/s0022-2836(03)00633-8 · Cited by 64
Matsumoto, S., Ogino, K., Noguchi, E., Russell, P. R., & Masai, H. (2005) · Journal of Biological Chemistry · doi:10.1074/jbc.m510575200 · Cited by 61
Miao, H., Seiler, J. A., & Burhans, W. C. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m204264200 · Cited by 60
G1 arrest cell-cycle-dependent clastogenesis in UV-irradiated human fibroblasts
Kaufmann, W. K., & Wilson, S. J. (1994) · Mutation Research/DNA Repair · doi:10.1016/0921-8777(94)90062-0 · Cited by 56
Self-citationCheckpoint Regulation of Replication Dynamics in UV-Irradiated Human Cells
Chastain, P. D., Heffernan, T. P., Nevis, K. R., Li, L., Kaufmann, W. K., Kaufman, D. G., & Cordeiro‐Stone, M. (2006) · Cell Cycle · doi:10.4161/cc.5.18.3236 · Cited by 52
Self-citationWatanabe, M., Maher, V. M., & McCormick, J. J. (1985) · Mutation Research/DNA Repair Reports · doi:10.1016/0167-8817(85)90070-7 · Cited by 48
Panning, M. M., & Gilbert, D. M. (2005) · Journal of Cellular Biochemistry · doi:10.1002/jcb.20395 · Cited by 48
Structure of the replication fork in ultraviolet light-irradiated human cells
Cordeiro‐Stone, M., Schumacher, R. I., & Meneghini, R. (1979) · Biophysical Journal · doi:10.1016/s0006-3495(79)85218-2 · Cited by 48
Self-citationThe Cell Cycle and Chemical Carcinogenesis
Grisham, J. W., Kaufmann, W. K., & Kaufman, D. G. (1983) · Pathology and Immunopathology Research · doi:10.1159/000154949 · Cited by 46
Self-citationTimeless in lung morphogenesis
Xiao, J., Li, C., Zhu, N., Borok, Z., & Minoo, P. (2003) · Developmental Dynamics · doi:10.1002/dvdy.10346 · Cited by 31
Self-citationOverexpression and Purification of Human XPA Using a Baculovirus Expression System
Hermanson, I. L., & Turchi, J. J. (2000) · Protein Expression and Purification · doi:10.1006/prep.2000.1224 · Cited by 25
Ejima, Y., & Sasaki, M. S. (1986) · Mutation research. Fundamental and molecular mechanisms of mutagenesis · doi:10.1016/0027-5107(86)90120-x · Cited by 24
Research works printed but not linked: 3
- Grisham J., 1983, Surv. Synth. Pathol. Res., 1, 49
- Heffernan T. P., J. Biol. Chem.
- 10.1001/archderm.1994.01690080084012 · DOI · Paper page
Cited by
Sorted by citations
ATR: an essential regulator of genome integrity
Cimprich, K. A., & Cortez, D. (2008) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2450 · Cited by 1,798
Eukaryotic Chromosome DNA Replication: Where, When, and How?
Masai, H., Matsumoto, S., You, Z., Yoshizawa-Sugata, N., & Oda, M. (2010) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.052308.103205 · Cited by 524
Maréchal, A., & Zou, L. (2015) · Cell Research · doi:10.1038/cr.2014.147 · Cited by 465
Hardeland, R., Madrid, J. A., Tan, D. X., & Reiter, R. J. (2011) · Journal of Pineal Research · doi:10.1111/j.1600-079x.2011.00934.x · Cited by 457
Thompson, L. H. (2012) · Mutation Research/Reviews in Mutation Research · doi:10.1016/j.mrrev.2012.06.002 · Cited by 357
Metadata
- Authors
- Ünsal-Kaçmaz, K., Chastain, P. D., Qu, P.-P., Minoo, P., Cordeiro-Stone, M., Sancar, A., & Kaufmann, W. K.
- Affiliations
- University of North Carolina at Chapel Hill (US)
- University of Southern California (US)
- Department of Pathology and Laboratory Medicine, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599
- Corresponding author
- Kaufmann, William K.
- Venue
- Molecular and Cellular Biology
- Publisher
- Informa UK Limited
- Published
- 2007-04-01
- Volume
- 27
- Issue
- 8
- Pages
- 3131-3142
- ISSN
- 0270-7306 (ISSN-L)
- 1098-5549
- PMC
- PMC1899931
- OpenAlex
- W2127622729
- Cited by
- 240
- References
- 67
- Citations by year
- 2026: 1 · 2025: 2 · 2024: 9 · 2023: 9 · 2022: 6 · 2021: 6 · 2020: 7 · 2019: 10 · 2018: 3 · 2017: 10 · 2016: 15 · 2015: 13 · 2014: 23 · 2013: 19 · 2012: 13
- FWCI
- 10.49
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Molecular and Cellular Biology (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Carolina Digital Repository (University of North Carolina at Chapel Hill) (submittedVersion)
- UNC Libraries
- Funders
- National Cancer Institute (R01CA055065, CA 55065, CA 81343, R01CA081343, P30CA016086)
- National Institute of General Medical Sciences (R01GM032833, GM32833)
- National Institute of Environmental Health Sciences (R01ES011012, ES11012, P30ES010126)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA Repair Mechanisms
- Health Sciences › Medicine › Oncology › Cancer-related Molecular Pathways
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Keywords
- S-phase checkpoint, UV-induced DNA damage, replication fork stalling, replication fork progression, DNA chain elongation, ATR-Chk1 signaling, TopBP1, Claspin, TIMELESS, replication protein A, UV-C radiation, DNA damage response
- MeSH terms
- Checkpoint Kinase 1, Amino Acid Sequence, Carrier Proteins, DNA, DNA Replication, DNA-Binding Proteins, Enzyme Activation, HeLa Cells, Humans, Idoxuridine, Models, Genetic, Molecular Sequence Data, Nuclear Proteins, Protein Binding, Protein Kinases, Ultraviolet Rays, Down-Regulation, S Phase, Cell Cycle Proteins, Intracellular Signaling Peptides and Proteins, Replication Protein A, Xeroderma Pigmentosum Group A Protein
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review