Tipin is required for stalled replication forks to resume DNA replication after removal of aphidicolin in Xenopus egg extracts
Open accessAbstract
Tipin and its interacting partner Tim1 (Timeless) form a complex at replication forks that plays an important role in the DNA damage checkpoint response. Here we identify Xenopus laevis Tipin as a substrate for cyclin E/cyclin-dependent kinases 2 that is phosphorylated in interphase and undergoes further phosphorylation upon entry into mitosis. During unperturbed DNA replication, the Tipin/Tim1 complex is bound to chromatin, and we were able to detect interactions between Tipin and the MCM helicase. Depletion of Tipin from Xenopus extracts did not significantly impair normal replication but substantially blocked the ability of stalled replication forks to recover after removal of a block imposed by aphidicolin. Tipin-depleted extracts also showed defects in the activation of Chk1 in response to aphidicolin, probably because of a failure to load the checkpoint mediator protein Claspin onto chromatin.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The Tim-Tipin complex associates with ATR-Chk1 checkpoint proteins and plays an essential role in the DNA damage response.
“The circadian protein Tim (Timeless) -Tipin (Timeless-interacting protein) complex associates with ATR-Chk1 checkpoint proteins and plays an essential role in DDR as well [130–133].”
From Functional interplay between ATM/ATR-mediated DNA damage response and DNA repair pathways in oxidative stress (2014) · cites this paper as [132]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Meijer, L., Nelson, D. J., Riazanski, V., Gabdoulkhakova, A. G., Héry-Arnaud, G., Berre, R. L., Loaëc, N., Oumata, N., Galons, H., Nowak, E., et al. (2016) · Journal of Innate Immunity · doi:10.1159/000444256 · Cited by 4,992 · see citing works
A comprehensive two-hybrid analysis to explore the yeast protein interactome
Ito, T., Chiba, T., Ozawa, R., Yoshida, M., Hattori, M., & Sakaki, Y. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.061034498 · Cited by 3,566 · see citing works
Molecular Mechanisms of Mammalian DNA Repair and the DNA Damage Checkpoints
Sancar, A., Lindsey-Boltz, L. A., Ünsal-Kaçmaz, K., & Linn, S. (2004) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.73.011303.073723 · Cited by 3,317 · see citing works
The DNA damage response: putting checkpoints in perspective
Zhou, B.-B. S., & Elledge, S. J. (2000) · Nature · doi:10.1038/35044005 · Cited by 3,213 · see citing works
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
Krogan, N. J., Cagney, G., Yu, H., Zhong, G., Guo, X., Ignatchenko, A., Li, J., Pu, S., Datta, N., Tikuisis, A., et al. (2006) · Nature · doi:10.1038/nature04670 · Cited by 2,915 · see citing works
Sensing DNA Damage Through ATRIP Recognition of RPA-ssDNA Complexes
Zou, L., & Elledge, S. J. (2003) · Science · doi:10.1126/science.1083430 · Cited by 2,693 · see citing works
Liu, Q., Guntuku, S., Cui, X.-S., Matsuoka, S., Cortez, D., Tamai, K., Luo, G., Carattini-Rivera, S., DeMayo, F., Bradley, A., et al. (2000) · Genes & Development · doi:10.1101/gad.14.12.1448 · Cited by 1,625 · see citing works
Linkage of ATM to Cell Cycle Regulation by the Chk2 Protein Kinase
Matsuoka, S. (1998) · Science · doi:10.1126/science.282.5395.1893 · Cited by 1,322 · see citing works
ATR-Mediated Checkpoint Pathways Regulate Phosphorylation and Activation of Human Chk1
Zhao, H., & Piwnica-Worms, H. (2001) · Molecular and Cellular Biology · doi:10.1128/mcb.21.13.4129-4139.2001 · Cited by 1,091 · see citing works
ATM- and cell cycle-dependent regulation of ATR in response to DNA double-strand breaks
Jazayeri, A., Falck, J., Lukas, C., Bartek, J., Smith, G. C. M., Lukas, J., & Jackson, S. P. (2006) · Nature Cell Biology · doi:10.1038/ncb1337 · Cited by 1,064 · see citing works
Principles of Tumor Suppression
Sherr, C. J. (2004) · Cell · doi:10.1016/s0092-8674(03)01075-4 · Cited by 1,028 · see citing works
Geminin, an inhibitor of DNA replication, is degraded during mitosis.
Mcgarry, T., & Kirschner, M. (1998) · Cell · doi:10.1016/s0092-8674(00)81209-x · Cited by 988 · see citing works
Byun, T. S., Pacek, M., Yee, M.-C., Walter, J. C., & Cimprich, K. A. (2005) · Genes & Development · doi:10.1101/gad.1301205 · Cited by 767 · see citing works
Inhibition of Cyclin‐Dependent Kinases by Purine Analogues
de Azevedo, W. F., Leclerc, S., Meijer, L., Havlı́ček, L., Strnad, M., & Kim, S. (1997) · European Journal of Biochemistry · doi:10.1111/j.1432-1033.1997.0518a.x · Cited by 733 · see citing works
Inhibition of Eukaryotic DNA Replication by Geminin Binding to Cdt1
Wohlschlegel, J. A., Dwyer, B. T., Dhar, S. K., Cvetic, C., Walter, J. C., & Dutta, A. (2000) · Science · doi:10.1126/science.290.5500.2309 · Cited by 698 · see citing works
Use of an oriented peptide library to determine the optimal substrates of protein kinases
Songyang, Z., Blechner, S., Hoagland, N., Hoekstra, M. F., Piwnica-Worms, H. M., & Cantley, L. C. (1994) · Current Biology · doi:10.1016/s0960-9822(00)00221-9 · Cited by 654 · see citing works
S-phase checkpoint proteins Tof1 and Mrc1 form a stable replication-pausing complex
Katou, Y., Kanoh, Y., Bando, M., Noguchi, H., Tanaka, H., Ashikari, T., Sugimoto, K., & Shirahige, K. (2003) · Nature · doi:10.1038/nature01900 · Cited by 649 · see citing works
Surviving the Breakup: The DNA Damage Checkpoint
Harrison, J. C., & Haber, J. E. (2006) · Annual Review of Genetics · doi:10.1146/annurev.genet.40.051206.105231 · Cited by 550 · see citing works
Mrc1 transduces signals of DNA replication stress to activate Rad53
Alcasabas, A. A., Osborn, A. J., Bachant, J., Hu, F., Werler, P., Bousset, K., Furuya, K., Diffley, J. F. X., Carr, A. M., & Elledge, S. J. (2001) · Nature Cell Biology · doi:10.1038/ncb1101-958 · Cited by 516 · see citing works
Aberrant cell cycle checkpoint function and early embryonic death in Chk1−/− micePreprint
Takai, H., Tominaga, K., Motoyama, N., Minamishima, Y. A., Nagahama, H., Tsukiyama, T., Ikeda, K., Nakayama, K., Nakanishi, M., & Nakayama, K. (2000) · Genes & Development · doi:10.1101/gad.14.12.1439 · Cited by 478 · see citing works
A unified view of the DNA-damage checkpoint
Melo, J. A., & Toczyski, D. P. (2002) · Current Opinion in Cell Biology · doi:10.1016/s0955-0674(02)00312-5 · Cited by 457 · see citing works
Kumagai, A., & Dunphy, W. G. (2000) · Molecular Cell · doi:10.1016/s1097-2765(05)00092-4 · Cited by 430 · see citing works
Guo, Z., Kumagai, A., Wang, S. X., & Dunphy, W. G. (2000) · Genes & Development · doi:10.1101/gad.842500 · Cited by 417 · see citing works
A Central Role for DNA Replication Forks in Checkpoint Activation and Response
Tercero, J. A., Longhese, M. P., & Diffley, J. F. X. (2003) · Molecular Cell · doi:10.1016/s1097-2765(03)00169-2 · Cited by 394 · see citing works
Osborn, A. J., & Elledge, S. J. (2003) · Genes & Development · doi:10.1101/gad.1098303 · Cited by 371 · see citing works
Checking on the fork: the DNA-replication stress-response pathway
Osborn, A. J., Elledge, S. J., & Zou, L. (2002) · Trends in Cell Biology · doi:10.1016/s0962-8924(02)02380-2 · Cited by 345 · see citing works
Coupling of Human Circadian and Cell Cycles by the Timeless Protein
Ünsal-Kaçmaz, K., Mullen, T. E., Kaufmann, W. K., & Sancar, A. (2005) · Molecular and Cellular Biology · doi:10.1128/mcb.25.8.3109-3116.2005 · Cited by 310 · see citing works
A screen for genes required for meiosis and spore formation based on whole-genome expression
Rabitsch, K. P., Tóth, A., Gálová, M., Schleiffer, A., Schaffner, G., Aigner, E., Rupp, C., Penkner, A. M., Moreno-Borchart, A. C., Primig, M., et al. (2001) · Current Biology · doi:10.1016/s0960-9822(01)00274-3 · Cited by 252 · see citing works
Human Claspin Is Required for Replication Checkpoint Control
Chini, C. C. S., & Chen, J. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m301136200 · Cited by 244 · see citing works
Ünsal-Kaçmaz, K., Chastain, P. D., Qu, P.-P., Minoo, P., Cordeiro-Stone, M., Sancar, A., & Kaufmann, W. K. (2007) · Molecular and Cellular Biology · doi:10.1128/mcb.02190-06 · Cited by 240 · see citing works
Kumagai, A., Guo, Z., Emami, K. H., Wang, S. X., & Dunphy, W. G. (1998) · The Journal of Cell Biology · doi:10.1083/jcb.142.6.1559 · Cited by 238 · see citing works
Identification of Protein Complexes Required for Efficient Sister Chromatid Cohesion
Mayer, M. L., Pot, I., Chang, M., Xu, H., Aneliunas, V., Kwok, T., Newitt, R., Aebersold, R. H., Boone, C. M., Brown, G. W., et al. (2004) · Molecular Biology of the Cell · doi:10.1091/mbc.e03-08-0619 · Cited by 235 · see citing works
Trenz, K., Smith, E., Smith, S. J., & Costanzo, V. (2006) · The EMBO Journal · doi:10.1038/sj.emboj.7601045 · Cited by 219 · see citing works
Self-citationA Predictive Scale for Evaluating Cyclin-dependent Kinase Substrates
Holmes, J. K., & Solomon, M. J. (1996) · Journal of Biological Chemistry · doi:10.1074/jbc.271.41.25240 · Cited by 206 · see citing works
Activation of the DNA Replication Checkpoint Through RNA Synthesis by Primase
Michael, W. M., Ott, R., Fanning, E., & Newport, J. W. (2000) · Science · doi:10.1126/science.289.5487.2133 · Cited by 206 · see citing works
Swi1 and Swi3 Are Components of a Replication Fork Protection Complex in Fission Yeast
Noguchi, E., Noguchi, C., McDonald, W. H., Yates, J. R., & Russell, P. R. (2004) · Molecular and Cellular Biology · doi:10.1128/mcb.24.19.8342-8355.2004 · Cited by 205 · see citing works
The DNA damage response: sensing and signaling
McGowan, C. H., & Russell, P. R. (2004) · Current Opinion in Cell Biology · doi:10.1016/j.ceb.2004.09.005 · Cited by 202 · see citing works
Hekmat-Nejad, M., You, Z., Yee, M., Newport, J. W., & Cimprich, K. A. (2000) · Current Biology · doi:10.1016/s0960-9822(00)00855-1 · Cited by 193 · see citing works
A time-less function for mouse Timeless
Gotter, A. L., Manganaro, T. F., Weaver, D. R., Kolakowski, L. F., Possidente, B. P., Sathyanarayanan, S., MacLaughlin, D. T., & Reppert, S. M. (2000) · Nature Neuroscience · doi:10.1038/77653 · Cited by 179 · see citing works
Repeated phosphopeptide motifs in Claspin mediate the regulated binding of Chk1
Kumagai, A., & Dunphy, W. G. (2003) · Nature Cell Biology · doi:10.1038/ncb921 · Cited by 172 · see citing works
Chou, D. M., & Elledge, S. J. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0609251103 · Cited by 166 · see citing works
Swi1 Prevents Replication Fork Collapse and Controls Checkpoint Kinase Cds1
Noguchi, E., Noguchi, C., Du, L., & Russell, P. R. (2003) · Molecular and Cellular Biology · doi:10.1128/mcb.23.21.7861-7874.2003 · Cited by 163 · see citing works
swi1 and swi3 Perform Imprinting, Pausing, and Termination of DNA Replication in S. pombe
Dalgaard, J. Z., & Klar, A. J. S. (2000) · Cell · doi:10.1016/s0092-8674(00)00063-5 · Cited by 157 · see citing works
Chromosome cohesion is regulated by a clock gene paralogue TIM-1
Chan, R. C., Chan, A., Jeon, M., Wu, T. F., Pasqualone, D., Rougvie, A. E., & Meyer, B. J. (2003) · Nature · doi:10.1038/nature01697 · Cited by 156 · see citing works
Human Claspin works with BRCA1 to both positively and negatively regulate cell proliferation
Lin, S.-Y., Li, K., Stewart, G. S., & Elledge, S. J. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0401847101 · Cited by 156 · see citing works
In VivoRegulation of the Early Embryonic Cell Cycle inXenopus
Hartley, R. S., Rempel, R. E., & Maller, J. L. (1996) · Developmental Biology · doi:10.1006/dbio.1996.0036 · Cited by 148 · see citing works
Xenopus Cut5 is essential for a CDK‐dependent process in the initiation of DNA replication
Hashimoto, Y., & Takisawa, H. (2003) · EMBO Journal · doi:10.1093/emboj/cdg238 · Cited by 140 · see citing works
Claspin and the Activated Form of ATR-ATRIP Collaborate in the Activation of Chk1
Kumagai, A., Kim, S.-M., & Dunphy, W. G. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m408353200 · Cited by 138 · see citing works
Mammalian TIMELESS and Tipin are Evolutionarily Conserved Replication Fork-associated Factors
Gotter, A. L., Suppa, C., & Emanuel, B. S. (2006) · Journal of Molecular Biology · doi:10.1016/j.jmb.2006.10.097 · Cited by 135 · see citing works
Nedelcheva, M. N., Roguev, A., Dolapchiev, L. B., Shevchenko, A., Taskov, H. B., Shevchenko, A., Stewart, A. F., & Stoynov, S. (2005) · Journal of Molecular Biology · doi:10.1016/j.jmb.2005.01.041 · Cited by 135 · see citing works
Mohanty, B. K., Bairwa, N. K., & Bastia, D. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0506540103 · Cited by 134 · see citing works
Yoshizawa-Sugata, N., & Masai, H. (2006) · Journal of Biological Chemistry · doi:10.1074/jbc.m605596200 · Cited by 127 · see citing works
Tof1p Regulates DNA Damage Responses During S Phase in Saccharomyces cerevisiae
Foss, E. J. (2001) · Genetics · doi:10.1093/genetics/157.2.567 · Cited by 126 · see citing works
Lutzmann, M., Maiorano, D., & Méchali, M. (2006) · The EMBO Journal · doi:10.1038/sj.emboj.7601436 · Cited by 98 · see citing works
G2 damage checkpoints: what is the turn-on?
O’Connell, M. J., & Cimprich, K. A. (2004) · Journal of Cell Science · doi:10.1242/jcs.01626 · Cited by 94 · see citing works
Tugal, T., Zou-Yang, X. H., Gavin, K. A., Pappin, D., Cañas, B., Kobayashi, R., Hunt, T., & Stillman, B. (1998) · Journal of Biological Chemistry · doi:10.1074/jbc.273.49.32421 · Cited by 92 · see citing works
Self-citationHuman Claspin Is a Ring-shaped DNA-binding Protein with High Affinity to Branched DNA Structures
Sar, F., Lindsey‐Boltz, L. A., Subramanian, D., Croteau, D. L., Hutsell, S. Q., Griffith, J. D., & Sancar, A. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m405793200 · Cited by 84 · see citing works
Luciani, M. G., Oehlmann, M., & Blow, J. J. (2004) · Journal of Cell Science · doi:10.1242/jcs.01400 · Cited by 81 · see citing works
Sommariva, E., Pellny, T. K., Karahan, N., Kumar, S., Huberman, J. A., & Dalgaard, J. Z. (2005) · Molecular and Cellular Biology · doi:10.1128/mcb.25.7.2770-2784.2005 · Cited by 80 · see citing works
Kubota, Y., & Takisawa, H. (1993) · The Journal of Cell Biology · doi:10.1083/jcb.123.6.1321 · Cited by 76 · see citing works
Lee, J., Gold, D. A., Shevchenko, A., Shevchenko, A., & Dunphy, W. G. (2005) · Molecular Biology of the Cell · doi:10.1091/mbc.e05-07-0671 · Cited by 70 · see citing works
Gotter, A. L. (2003) · Journal of Molecular Biology · doi:10.1016/s0022-2836(03)00633-8 · Cited by 64 · see citing works
Matsumoto, S., Ogino, K., Noguchi, E., Russell, P. R., & Masai, H. (2005) · Journal of Biological Chemistry · doi:10.1074/jbc.m510575200 · Cited by 61 · see citing works
Gognies, S., Gainvors, A., Aigle, M., et al. (1999) · Yeast · doi:10.1002/(sici)1097-0061(19990115)15:1 · Cited by 49 · see citing works
Flagged first, then by citations
Research works printed but not linked: 2
- [10]Takai H, Tominaga K, Motoyama N, Minamishima YA, Nagahama H, Tsukiyama T, Ikeda K, Nakayama K, Nakanishi M, Nakayama K. Genes Dev. 2000;14:1439–1447. [PMC free article] [PubMed] [Google Scholar]
- [11]Liu Q, Guntuku S, Cui XS, Matsuoka S, Cortez D, Tamai K, Luo G, Carattini-Rivera S, DeMayo F, Bradley A, et al. Genes Dev. 2000;14:1448–1459. [PMC free article] [PubMed] [Google Scholar]
Cited by
Sorted by citations
ATR: an essential regulator of genome integrity
Cimprich, K. A., & Cortez, D. (2008) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2450 · Cited by 1,798 · see citing works
Maréchal, A., & Zou, L. (2015) · Cell Research · doi:10.1038/cr.2014.147 · Cited by 465 · see citing works
DNA Damage Response: Three Levels of DNA Repair Regulation
Sirbu, B. M., & Cortez, D. (2013) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a012724 · Cited by 272 · see citing works
Yan, S., Sorrell, M., & Berman, Z. (2014) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-014-1666-4 · Cited by 247 · see citing works
Mechanisms of replication fork protection: a safeguard for genome stability
Errico, A., & Costanzo, V. (2012) · Critical Reviews in Biochemistry and Molecular Biology · doi:10.3109/10409238.2012.655374 · Cited by 159 · see citing works
Self-citationTopBP1 and DNA polymerase-α directly recruit the 9-1-1 complex to stalled DNA replication forks
Yan, S., & Michael, W. M. (2009) · Journal of Cell Biology · doi:10.1083/jcb.200810185 · Cited by 107 · see citing works
- Authors
- Errico, A., Costanzo, V., & Hunt, T.
- Affiliations
- Cancer Research UK (GB)
- Corresponding author
- Hunt, Tim
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- National Academy of Sciences
- Published
- 2007-09-18
- Volume
- 104
- Issue
- 38
- Pages
- 14929-14934
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- PMC
- PMC1975688
- OpenAlex
- W2037887345
- Cited by
- 92
- References
- 64
- Citations by year
- 2025: 1 · 2024: 1 · 2022: 2 · 2021: 2 · 2020: 4 · 2019: 2 · 2018: 1 · 2017: 5 · 2016: 5 · 2015: 6 · 2014: 9 · 2013: 9 · 2012: 6
- FWCI
- 4.10
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Proceedings of the National Academy of Sciences (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Cancer Research UK
- European Commission
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA Repair Mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Microtubule and mitosis dynamics
- Health Sciences › Medicine › Oncology › Cancer-related Molecular Pathways
- Keywords
- TIPIN, TIM-1, TIMELESS, DNA replication restart, aphidicolin, MCM helicase, Chk1 activation, Claspin, DNA damage checkpoint, Xenopus egg extracts
- MeSH terms
- Checkpoint Kinase 1, Animals, Carrier Proteins, Chromatin, DNA Damage, DNA Replication, DNA-Binding Proteins, Enzyme Inhibitors, Ovum, Phosphorylation, Protein Kinases, Xenopus laevis, S Phase, Aphidicolin, Cell Cycle Proteins, Cyclin E, Xenopus Proteins, Adaptor Proteins, Signal Transducing, Cyclin-Dependent Kinase 2
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review