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Keap1 Recruits Neh2 through Binding to ETGE and DLG Motifs: Characterization of the Two-Site Molecular Recognition Model
Open accessAbstract
The expression of the phase 2 detoxification enzymes and antioxidant proteins is induced at the transcriptional level by Nrf2 and negatively regulated at the posttranslational level by Keap1 through protein-protein interactions with and subsequent proteolysis of Nrf2. We found that the Neh2 domain of Nrf2 is an intrinsically disordered but biologically active regulatory domain containing a 33-residue central alpha-helix followed by a mini antiparallel beta-sheet. Isothermal calorimetry analysis indicated that one Neh2 molecule interacts with two molecules of Keap1 via two binding sites, the stronger binding ETGE motif and the weaker binding DLG motif. Nuclear magnetic resonance titration study showed that these two motifs of the Neh2 domain bind to an overlapping site on the bottom surface of the beta-propeller structure of Keap1. In contrast, the central alpha-helix of the Neh2 domain does not have any observable affinity to Keap1, suggesting that this region may serve as a bridge connecting the two motifs for the association with the two beta-propeller structures of a dimer of Keap1. Based on these observations, we propose that Keap1 recruits Nrf2 by the ETGE motif and that the DLG motif of the Neh2 domain locks its lysine-rich central alpha-helix in a correct position to benefit ubiquitin signaling.
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“Keap1 recruits Nrf2 first through the binding of one Keap1 molecule to the high-affinity ETGE motif within the Nrf2’s Neh2 domain. Subsequent binding of the other Keap1 molecule at the low-affinity DLG motif locks Nrf2 in place by orienting the lysine residues within Neh2 in the correct position for ubiquitination by Cul3 and degradation by the 26S proteasome [58,65].”
From Nrf2 and Oxidative Stress: A General Overview of Mechanisms and Implications in Human Disease (2022) · cites this paper as [58]
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A novel β-TrCP1/NRF2 interaction inhibitor for effective anti-inflammatory therapy
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“This interaction presents NRF2 for ubiquitination by the CUL3/RBX1 (Cullin-3/RING-box protein 1) complex, leading to proteasomal degradation [15, 16].”
NRF2 activation in cancer and overview of NRF2 small molecule inhibitors
Ngo, H. H., Yu, B.-Y., Lee, J., Kim, H. W., & Keum, Y. (2025) · Archives of Pharmacal Research · doi:10.1007/s12272-025-01557-x · Cited by 9
“The Neh2 domain harbors two structural motifs, namely DLG and ETGE motifs, that can promote the proteolysis of NRF2 by the CULLIN 3 (CUL3)/KEAP1 E3 ubiquitin ligase complex (Tong et al. 2006a; Horie et al. 2021).”
New insights into the mechanism of Keap1-Nrf2 interaction based on cancer-associated mutations
Cheng, L., Wang, H., Li, S., Liu, Z., & Wang, C. (2021) · Life Sciences · doi:10.1016/j.lfs.2021.119791 · Cited by 8
The effect and mechanism of combined exposure of MC-LR and NaNO2 on liver lipid metabolism
Yang, J., Zhang, Z., Du, X., Wang, Y., Meng, R., Ge, K., Wu, C., Liang, X., Zhang, H., & Guo, H. (2024) · Environmental Research · doi:10.1016/j.envres.2024.119113 · Cited by 8
Engineering New Protein–Protein Interactions on the β‐Propeller Fold by Yeast Cell Surface Display
Zhang, K., Li, H., Bhuripanyo, K., Zhao, B., Chen, T. F., Zheng, N., & Yin, J. (2013) · ChemBioChem · doi:10.1002/cbic.201200718 · Cited by 8
Khan, H., Killoran, R. C., Brickenden, A. M., Fan, J., Yang, D., & Choy, W. (2015) · Biochemical Journal · doi:10.1042/bj20140761 · Cited by 8
Mitochondria and Parkinson's Disease
Simon, D. K., Chu, C. T., & Swerdlow, R. H. (2011) · Parkinson s Disease · doi:10.4061/2011/261791 · Cited by 8
Liu, X., Yang, Q., & Nakamura, Y. (2020) · Current Pharmacology Reports · doi:10.1007/s40495-020-00227-4 · Cited by 8
Arabpour, M., Zareanshahraki, M., Albadr, R. J., Taher, W. M., Alwan, M., Jawad, M. J., Ghaffarzade, S. K., Mushtaq, H., & Ghazanfari, K. (2025) · Biological Procedures Online · doi:10.1186/s12575-025-00285-2 · Cited by 7
“Nrf2, a transcription factor, has been recognized as the principal controller of several genes that play a role in the antioxidant defense response [13, 14].”
Cheng, I.-C., Chen, Y., Ku, C., Huang, Y.-W., & Yang, C. (2015) · Journal of Chemical Information and Modeling · doi:10.1021/acs.jcim.5b00300 · Cited by 9
Targeting Nrf2 signaling pathway: new therapeutic strategy for cardiovascular diseases
Wu, Q., Yao, J., Xiao, M., Zhang, X., Zhang, M., & Xi, X. (2024) · Journal of drug targeting · doi:10.1080/1061186x.2024.2356736 · Cited by 8
“the primary pathway for Nrf2 degradation is located in the cyto-plasm and controlled by the kelch sample related protein-1 (Keap1) [18]. the Neh2 domain interacts with Keap1 to regulate Nrf2 stability and degradation [10,16,19].”
Park, C. H., Noh, J. S., Okamoto, T., Park, J. C., & Yokozawa, T. (2012) · Evidence-based Complementary and Alternative Medicine · doi:10.1155/2012/143489 · Cited by 7
“On the other hand, oxidative stress induces alterations in the Nrf2 complex, and its gene transcription, such as that of HO-1, is enhanced [28].”
BackgroundHaque, E., Śmiech, M., Łuczyńska, K., Bouchard, M. F., Viger, R. S., Kono, H., Pierzchała, M., & Taniguchi, H. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms22105296 · Cited by 7
“The D29A and L30F MTs are found in the DLG motif of the Neh2 domain of NRF2, and this domain is essential for ubiquitination and degradation of NRF2 [34,35].”
BackgroundGautam, P., Kaushal, J., Sharma, A., & Bhatnagar, A. (2022) · Immunobiology · doi:10.1016/j.imbio.2022.152180 · Cited by 7
Wakabayashi, N., Yagishita, Y., Joshi, T., & Kensler, T. W. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms241713345 · Cited by 7
Exploration on the Mechanism of Ubiquitin Proteasome System in Cerebral Stroke
Li, Y., Wang, Y., & Zou, W. (2022) · Frontiers in Aging Neuroscience · doi:10.3389/fnagi.2022.814463 · Cited by 7
Atia, A., & Abdullah, A. (2014) · International Journal of PharmTech Research · Cited by 7
Patenting perspective on Keap1 inhibitors (2019–2024)
Luo, Y., Yang, W., Zhang, Y., Jiang, S., Zhu, J., Li, X., You, Q., & Lu, M. (2025) · Expert Opinion on Therapeutic Patents · doi:10.1080/13543776.2025.2462844 · Cited by 6
Cho, H., & Lee, S. (2025) · European Journal of Medicinal Chemistry · doi:10.1016/j.ejmech.2025.118485 · Cited by 6
Chen, T.-Y., & Zheng, S.-K. (2022) · In Vitro Cellular & Developmental Biology - Animal · doi:10.1007/s11626-022-00725-3 · Cited by 6
“Under normal basal conditions, Nrf2 is maintained at a low level in the cytoplasm by connecting with its suppressor kelch-like ECH-associated protein 1 (Keap1) (Tong et al. 2006).”
BackgroundMajor genomic mutations driving hepatocellular carcinoma
Chen, R., Lin, M., & Gao, D. (2023) · Genome Instability & Disease · doi:10.1007/s42764-023-00103-7 · Cited by 8
“Normally, the KELCH domain located in the C-terminus of KEAP1 interacts with the DLG and ETGE motifs in the NEH2 domain of NRF2 to mediate the ubiquitination and subsequent proteosome-mediated degradation of NRF2 in the cytosol (McMahon et al., 2006; Padmanabhan et al., 2008; Tong et al., 2006).”
BackgroundToward a Better Understanding of NRF2/NFE2L2 and BCRP/ABCG2 in Therapy Resistance in Cancer
Hallis, S. P., Go, B. J., Yoo, J. M., Cho, G. H., & Kwak, M. (2023) · Drug Targets and Therapeutics · doi:10.58502/dtt.23.0021 · Cited by 7
Liu, J., Zheng, D., Chen, L., Chen, S., & Min, J. (2024) · Journal of Integrative Neuroscience · doi:10.31083/j.jin2305103 · Cited by 6
Wolle, P., Weisner, J., Keul, M., Landel, I., Lategahn, J., & Rauh, D. (2018) · ChemMedChem · doi:10.1002/cmdc.201800477 · Cited by 6
Poore, D. D., Hofmann, G. A., Wolfe, L. A., Qi, H., Jiang, M., Fischer, M., Wu, Z., Sweitzer, T. D., Chakravorty, S. J., Donovan, B. T., et al. (2018) · SLAS DISCOVERY · doi:10.1177/2472555218807698 · Cited by 6
Role of K-Loop Cysteine Residues in the Marburg Virus Protein VP24–Human Keap1 Complex
Bhattarai, N., Gerstman, B. S., & Chapagain, P. P. (2018) · ACS Omega · doi:10.1021/acsomega.8b02386 · Cited by 6
Metadata
- Authors
- Tong, K. I., Katoh, Y., Kusunoki, H., Itoh, K., Tanaka, T., & Yamamoto, M.
- Affiliations
- University of Tsukuba (JP)
- Corresponding author
- Tanaka, Toshiyuki
- Yamamoto, Masayuki
- Venue
- Molecular and Cellular Biology
- Publisher
- Informa UK Limited
- Published
- 2006-04-01
- Volume
- 26
- Issue
- 8
- Pages
- 2887-2900
- ISSN
- 0270-7306 (ISSN-L)
- 1098-5549
- PMC
- PMC1446969
- OpenAlex
- W2171218310
- Cited by
- 759
- References
- 71
- Citations by year
- 2026: 44 · 2025: 44 · 2024: 42 · 2023: 56 · 2022: 58 · 2021: 46 · 2020: 59 · 2019: 41 · 2018: 38 · 2017: 51 · 2016: 31 · 2015: 34 · 2014: 36 · 2013: 35 · 2012: 30
- FWCI
- 7.06
- Type
- journal article
- Language
- en
- Open access
- green
- europepmc.org
- Locations
- Molecular and Cellular Biology (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics, phytochemicals, and oxidative stress
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Glutathione Transferases and Polymorphisms
- Keywords
- Keap1, Nrf2, protein-protein interaction, two-site model, beta-propeller, intrinsically disordered proteins, ubiquitin ligase, post-translational regulation, antioxidant proteins
- MeSH terms
- Kelch-Like ECH-Associated Protein 1, Amino Acid Sequence, Animals, Binding Sites, Calorimetry, Cytoskeletal Proteins, Escherichia coli, Models, Chemical, Models, Molecular, Molecular Sequence Data, Protein Binding, Protein Processing, Post-Translational, Recombinant Fusion Proteins, Thermodynamics, Ultracentrifugation, Conserved Sequence, Point Mutation, Sequence Homology, Amino Acid, Protein Structure, Secondary, Protein Structure, Tertiary, Nuclear Magnetic Resonance, Biomolecular, Amino Acid Motifs, Adaptor Proteins, Signal Transducing, NF-E2-Related Factor 2, Mice
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