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Keap1 Recruits Neh2 through Binding to ETGE and DLG Motifs: Characterization of the Two-Site Molecular Recognition Model
Open accessAbstract
The expression of the phase 2 detoxification enzymes and antioxidant proteins is induced at the transcriptional level by Nrf2 and negatively regulated at the posttranslational level by Keap1 through protein-protein interactions with and subsequent proteolysis of Nrf2. We found that the Neh2 domain of Nrf2 is an intrinsically disordered but biologically active regulatory domain containing a 33-residue central alpha-helix followed by a mini antiparallel beta-sheet. Isothermal calorimetry analysis indicated that one Neh2 molecule interacts with two molecules of Keap1 via two binding sites, the stronger binding ETGE motif and the weaker binding DLG motif. Nuclear magnetic resonance titration study showed that these two motifs of the Neh2 domain bind to an overlapping site on the bottom surface of the beta-propeller structure of Keap1. In contrast, the central alpha-helix of the Neh2 domain does not have any observable affinity to Keap1, suggesting that this region may serve as a bridge connecting the two motifs for the association with the two beta-propeller structures of a dimer of Keap1. Based on these observations, we propose that Keap1 recruits Nrf2 by the ETGE motif and that the DLG motif of the Neh2 domain locks its lysine-rich central alpha-helix in a correct position to benefit ubiquitin signaling.
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“Keap1 recruits Nrf2 first through the binding of one Keap1 molecule to the high-affinity ETGE motif within the Nrf2’s Neh2 domain. Subsequent binding of the other Keap1 molecule at the low-affinity DLG motif locks Nrf2 in place by orienting the lysine residues within Neh2 in the correct position for ubiquitination by Cul3 and degradation by the 26S proteasome [58,65].”
From Nrf2 and Oxidative Stress: A General Overview of Mechanisms and Implications in Human Disease (2022) · cites this paper as [58]
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BackgroundSelf-citationALS-FTLD associated mutations of SQSTM1 impact on Keap1-Nrf2 signalling
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Karunatilleke, N. C., Fast, C. S., Ngo, V., Brickenden, A. M., Duennwald, M. L., Konermann, L., & Choy, W. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms22147434 · Cited by 52
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BackgroundResultInfluentialMechanisms Behind Resistance to PI3K Inhibitor Treatment Induced by the PIM Kinase
Song, J. H., Singh, N., Luevano, L. A., Padi, S. K. R., Okumura, K., Olive, V., Black, S. M., Warfel, N. A., Goodrich, D. W., & Kraft, A. S. (2018) · Molecular Cancer Therapeutics · doi:10.1158/1535-7163.mct-18-0374 · Cited by 52
“NRF2 exists in complex with KEAP1 via direct protein–protein interactions between the KEAP1 Kelch domain and the ETGE and DLG motifs on the Neh2 domain of NRF2 (36).”
BackgroundAnti-Inflammatory Therapeutic Mechanisms of Isothiocyanates: Insights from Sulforaphane
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“…have shown that high-a ffi nity ETGE (K d ~ 5 nM)- and low-a ffi nity DLG (K d ~ 1 µM)-binding motifs exist and coordinate Nrf2-KEAP1 binding [281–284]. binding with KEAP1 and, hence, gov-Biomedicines The Neh2 domain contains seven lysine residues, which are critical substrates in the…”
BackgroundBaicalein modulates Nrf2/Keap1 system in both Keap1-dependent and Keap1-independent mechanisms
Qin, S., Deng, F., Wu, W., Jiang, L., Yamashiro, T., Yano, S., & Hou, D. (2014) · Archives of Biochemistry and Biophysics · doi:10.1016/j.abb.2014.03.011 · Cited by 51
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“It contains two binding sites (the DLG and ETGEmotifs) responsible forKeap1 binding(10) and seven lysine residues important for ubiquitin conjugation.(10,11) The Neh1 domain has been shown to heterodimerize with Maf and bind to the ARE within DNA since it contains a CNC-type bZIP DNA-binding motif.”
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Liu, Q., Zhang, H., Smeester, L., Zou, F., Kesic, M., Jaspers, I., Pi, J., & Fry, R. C. (2010) · BMC Medical Genomics · doi:10.1186/1755-8794-3-37 · Cited by 50
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“23 24–26 When cells are challenged by oxidative or electrophilic stress, covalent modification of highly reactive cysteine residues in KEAP1 impairs its E3 ligase activity, enabling newly synthesized NRF2 to rapidly accumulate and move to the nucleus to induce the expression of anti-oxidant genes.”
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“The Neh6 domain has been identified as an indispensable role in the Keap1-independent degradation of Nrf2 and regulates the stability of Nrf2 [31].”
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“The closed conformation facilitates the ubiquitylation of Nrf2 for subsequent degradation [39, 40].”
BackgroundEggler, A. L., & Savinov, S. N. (2013) · Springer eBooks · doi:10.1007/978-3-319-00581-2_7 · Cited by 42
“There are two separate sites in Nrf2 that bind to Keap1, termed the ETGE and DLG motifs [111].”
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Borcherding, D. C., Siefert, M. E., Lin, S., Brewington, J. J., Sadek, H. A., Clancy, J. P., Plafker, S. M., & Ziady, A. G. (2019) · Journal of Clinical Investigation · doi:10.1172/jci96273 · Cited by 42
Design and characterization of a heterobifunctional degrader of KEAP1
Chen, H., Nguyen, N. H., Magtoto, C. M., Cobbold, S. A., Bidgood, G. M., Guzman, L. G. M., Richardson, L. W., Corbin, J. E., Au, A. E., Lechtenberg, B. C., et al. (2022) · Redox Biology · doi:10.1016/j.redox.2022.102552 · Cited by 42
Exercise-induced Nrf2 activation increases antioxidant defenses in skeletal muscles
Powers, S. K., Lategan-Potgieter, R., & Goldstein, E. R. (2024) · Free Radical Biology and Medicine · doi:10.1016/j.freeradbiomed.2024.07.041 · Cited by 45
Multivalent IDP assemblies: Unique properties of LC8‐associated, IDP duplex scaffolds
Clark, S. A., Jespersen, N. E., Woodward, C. K., & Barbar, E. J. (2015) · FEBS Letters · doi:10.1016/j.febslet.2015.07.032 · Cited by 43
“1A(2)) is Keap1, a hub protein that modifies its intrinsically disordered binding partner Nrf2 through a proposed ‘‘hinge and latch’’ process [41,42], leading to its polyubiquitination and subsequent degradation.”
BackgroundThe novel Nrf2 inducer TFM-735 ameliorates experimental autoimmune encephalomyelitis in mice
Higashi, C., Kawaji, A., Tsuda, N., Hayashi, M., Saito, R., Yagishita, Y., Suzuki, T., Uruno, A., Nakamura, M., Nakao, K., et al. (2017) · European Journal of Pharmacology · doi:10.1016/j.ejphar.2017.02.044 · Cited by 44
“Upon exposure to electrophilic or oxidative stress, Nrf2 evades Keap1-mediated degradation, translocates to the nucleus, and induces its target genes (Fukutomi et al., 2014; Kobayashi et al., 2006; Saito et al., 2015; Takaya et al., 2012; Tong et al., 2006).”
BackgroundSelf-citationCarcinogenesis and transcriptional regulation through Maf recognition elements
Motohashi, H., & Yamamoto, M. P. (2006) · Cancer Science · doi:10.1111/j.1349-7006.2006.00358.x · Cited by 41
Self-citationNrf2 and Antioxidant Defense Against CYP2E1 Toxicity
Cederbaum, A. I. (2013) · Subcellular Biochemistry · doi:10.1007/978-94-007-5881-0_2 · Cited by 47
Wang, Y., Zhang, X., Meng, F.-G., & Zeng, T. (2021) · Toxicology Mechanisms and Methods · doi:10.1080/15376516.2021.1894624 · Cited by 40
“Under quiescent states, the ETGE and DLG motifs of Nrf2 Nedh2 domain bind with the Kelch domain of Kelch-like ECH-associated protein 1(Keap1), forming a Nrf2Keap1 complex of 1:2 stoichiometry (Tong et al. 2006; Kansanen et al. 2012).”
BackgroundKrakowiak, A., & Pietrasik, S. (2023) · Biology · doi:10.3390/biology12060875 · Cited by 43
“The stoichiometry of KEAP1 and NRF2 within the complex is 2:1, as demonstrated in an isothermal calorimetry study [42].”
BackgroundJegani, K. T., Balde, A., & Nazeer, R. A. (2024) · Food Bioscience · doi:10.1016/j.fbio.2024.105745 · Cited by 40
Zhong, M., Lynch, A. J., Muellers, S. N., Jehle, S., Luo, L., Hall, D. R., Iwase, R., Carolan, J. P., Egbert, M. E., Wakefield, A., et al. (2019) · Biochemistry · doi:10.1021/acs.biochem.9b00943 · Cited by 40
“Moreover, the insensitivity of the measured affinity to the presence of the DLG motif indicates that, for the longer construct in which both binding motifs are present, binding to KEAP1 is primarily through DxETGE, as expected given its higher affinity (33, 34).”
BackgroundResultInfluentialLiu, X., Taylor, R. D., Griffin, L., Coker, S.-F., Adams, R., Ceska, T., Shi, J., Lawson, A. D. G., & Baker, T. (2017) · Scientific Reports · doi:10.1038/srep41306 · Cited by 39
“Two hairpin loop motifs from Nrf2 (the stronger binding ETGE motif and the weaker binding DLG motif) have been reported to bind at the same region of two Keap1 Kelch domains 21 .”
Dubey, S., & Singh, E. (2023) · Inflammopharmacology · doi:10.1007/s10787-023-01173-5 · Cited by 39
Signal Transduction, Ageing and Disease
Zhang, L. J., Yousefzadeh, M. J., Suh, Y., Niedernhofer, L. J., & Robbins, P. D. (2019) · Sub-cellular biochemistry/Subcellular biochemistry · doi:10.1007/978-981-13-3681-2_9 · Cited by 40
Haque, E., Karim, M. R., Teeli, A. S., Śmiech, M., Leszczyński, P., Winiarczyk, D., Parvanov, E. D., Atanasov, A. G., & Taniguchi, H. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21155378 · Cited by 40
“The C-terminal Kelch domain binds to the ETGE motif or DLG motif of NRF2 [51].”
BackgroundSrivastava, R., Fernández-Ginés, R., Encinar, J. A., Cuadrado, A., & Wells, G. (2022) · Free Radical Biology and Medicine · doi:10.1016/j.freeradbiomed.2022.09.023 · Cited by 41
“It is well-known that under normal physiological conditions, the ETGE and DLG motifs in the NRF2-Neh2 regulatory domain, enable its binding to the Kelch domain of the E3 ubiquitin ligase substrate adaptor Kelch-like ECH-associated protein 1 (KEAP1) [13,14].”
BackgroundAnalysis of Common and Specific Mechanisms of Liver Function Affected by Nitrotoluene Compounds
Deng, Y., Meyer, S. A., Guan, X., Escalon, B. L., Ai, J., Wilbanks, M. S., Welti, R., García‐Reyero, N., & Perkins, E. J. (2011) · PLoS ONE · doi:10.1371/journal.pone.0014662 · Cited by 40
“. Under normal conditions NRF2 is bound to Keap1 in the cytoplasm”
BackgroundWang, J., Cao, Y., Yang, L., Zhu, H., Zhang, J., Che, J., Zhuang, R., & Shao, J. (2023) · European Journal of Medicinal Chemistry · doi:10.1016/j.ejmech.2023.115998 · Cited by 39
Schultz, M., Abdel‐Mageed, A. B., & Mondal, D. (2010) · Cancers · doi:10.3390/cancers2021354 · Cited by 37
“Keap1 serves as a linker protein for Cul3 based E3 ubiquitination of Nrf2, which leads to Nrf2’s proteosomal degradation.”
BackgroundInfluentialKhan, H., Cino, E. A., Brickenden, A. M., Fan, J., Yang, D., & Choy, W. (2013) · Journal of Molecular Biology · doi:10.1016/j.jmb.2013.01.005 · Cited by 37
Fang, H., Xie, J., Zhao, W., Liu, Z.-L., Liu, Y., Tian, L., & Niu, J. (2021) · Aquaculture Nutrition · doi:10.1111/anu.13386 · Cited by 37
Oxidative Stress and Cancer Heterogeneity Orchestrate NRF2 Roles Relevant for Therapy Response
Gall‐Tros̆elj, K., Tomljanović, M., Jaganjac, M., Glavan, T. M., Gašparović, A. Č., Milković, L., Šunjić, S. B., Buttari, B., Profumo, E., Saha, S., et al. (2022) · Molecules · doi:10.3390/molecules27051468 · Cited by 38
Chen, F., Zhan, J., Liu, M., Mamun, A. A., Huang, S., Tao, Y., Zhao, J., Zhang, Y., Xu, Y., He, Z., et al. (2023) · International Journal of Biological Sciences · doi:10.7150/ijbs.85692 · Cited by 36
“The kelch-like ECH-associated protein 1 (KEAP1) tightly regulates intracellular concentration of NFE2L2 [64, 65].”
Physiological relevance of covalent protein modification by dietary isothiocyanates
Nakamura, T., Abe‐Kanoh, N., & Nakamura, Y. (2017) · Journal of Clinical Biochemistry and Nutrition · doi:10.3164/jcbn.17-91 · Cited by 36
Pereira, E. J., Burns, J. S., Lee, C. Y., Marohl, T., Calderon, D., Wang, L., Atkins, K. A., Wang, C., & Janes, K. A. (2020) · Science Signaling · doi:10.1126/scisignal.aba4200 · Cited by 36
A survey of the year 2006 literature on applications of isothermal titration calorimetry
Okhrimenko, O., & Jelesarov, I. (2008) · Journal of Molecular Recognition · doi:10.1002/jmr.859 · Cited by 36
Structural Basis for Recruitment of DAPK1 to the KLHL20 E3 Ligase
Chen, Z., Picaud, S., Filippakopoulos, P., D'Angiolella, V., & Bullock, A. N. (2019) · Structure · doi:10.1016/j.str.2019.06.005 · Cited by 37
Roy, R. V., Pratheeshkumar, P., Son, Y.-O., Wang, L., Hitron, J. A., Divya, S. P., Zhang, Z., & Shi, X. (2016) · Toxicology and Applied Pharmacology · doi:10.1016/j.taap.2016.07.016 · Cited by 35
“Constitutive expression of Nrf2 is prominent in several types of human cancer cell lines and tumors (Tong et al., 2006; Inami et al., 2011).”
BackgroundThe KEAP1/NRF2 Signaling Pathway in Keratinization
Ishitsuka, Y., Ogawa, T., & Roop, D. R. (2020) · Antioxidants · doi:10.3390/antiox9080751 · Cited by 35
“Altogether, this evidence could explain why ETGE and DLG serve as “the hinge and the latch,” respectively [97,98].”
BackgroundMethodInfluentialKim, S., Saeidi, S., Cho, N., Kim, S. H., Lee, H., Han, W., Noh, D., & Surh, Y. (2020) · Cancer Letters · doi:10.1016/j.canlet.2020.11.047 · Cited by 35
Therapeutic potential of Nrf-2 pathway in the treatment of diabetic neuropathy and nephropathy
Gupta, A. K., Behl, T., Sehgal, A., Bhatia, S., Jaglan, D., & BUNGAU, S. G. (2021) · Molecular Biology Reports · doi:10.1007/s11033-021-06257-5 · Cited by 37
Metadata
- Authors
- Tong, K. I., Katoh, Y., Kusunoki, H., Itoh, K., Tanaka, T., & Yamamoto, M.
- Affiliations
- University of Tsukuba (JP)
- Corresponding author
- Tanaka, Toshiyuki
- Yamamoto, Masayuki
- Venue
- Molecular and Cellular Biology
- Publisher
- Informa UK Limited
- Published
- 2006-04-01
- Volume
- 26
- Issue
- 8
- Pages
- 2887-2900
- ISSN
- 0270-7306 (ISSN-L)
- 1098-5549
- PMC
- PMC1446969
- OpenAlex
- W2171218310
- Cited by
- 759
- References
- 71
- Citations by year
- 2026: 44 · 2025: 44 · 2024: 42 · 2023: 56 · 2022: 58 · 2021: 46 · 2020: 59 · 2019: 41 · 2018: 38 · 2017: 51 · 2016: 31 · 2015: 34 · 2014: 36 · 2013: 35 · 2012: 30
- FWCI
- 7.06
- Type
- journal article
- Language
- en
- Open access
- green
- europepmc.org
- Locations
- Molecular and Cellular Biology (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics, phytochemicals, and oxidative stress
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Glutathione Transferases and Polymorphisms
- Keywords
- Keap1, Nrf2, protein-protein interaction, two-site model, beta-propeller, intrinsically disordered proteins, ubiquitin ligase, post-translational regulation, antioxidant proteins
- MeSH terms
- Kelch-Like ECH-Associated Protein 1, Amino Acid Sequence, Animals, Binding Sites, Calorimetry, Cytoskeletal Proteins, Escherichia coli, Models, Chemical, Models, Molecular, Molecular Sequence Data, Protein Binding, Protein Processing, Post-Translational, Recombinant Fusion Proteins, Thermodynamics, Ultracentrifugation, Conserved Sequence, Point Mutation, Sequence Homology, Amino Acid, Protein Structure, Secondary, Protein Structure, Tertiary, Nuclear Magnetic Resonance, Biomolecular, Amino Acid Motifs, Adaptor Proteins, Signal Transducing, NF-E2-Related Factor 2, Mice
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