Viral Quasispecies Evolution
Cites (888)
Items 201–400 of 885
- Error thresholds of replication in finite populations mutation frequencies and the onset of muller's ratchetNowak, Martin, Schuster, Peter · 1989 · Journal of Theoretical Biology
- Genetic Diversity in RNA Virus Quasispecies Is Controlled by Host-Virus InteractionsWilliam L. Schneider, Marilyn J. Roossinck · 2001 · Journal of Virology
- Differential use of importin-α isoforms governs cell tropism and host adaptation of influenza virusGülşah Gabriel, Karin Klingel, Anna Otte, Swantje Thiele, Ben Hudjetz, Gökhan Arman-Kalcek, Martina Sauter, Tatiana Shmidt, Franziska Rother, Sigrid Baumgarte et al. · 2011 · Nature Communications
- Evolutionary constraints on chaperone-mediated folding provide an antiviral approach refractory to development of drug resistanceRon Geller, Marco Vignuzzi, Raul Andino, Judith Frydman · 2007 · Genes & Development
- Viral hepatocarcinogenesisW-L Tsai, Raymond T. Chung · 2010 · Oncogene
- On the nature of virus quasispeciesManfred Eigen · 1996 · Trends in Microbiology
- Mutation Frequencies at Defined Single Codon Sites in Vesicular Stomatitis Virus and Poliovirus Can Be Increased Only Slightly by Chemical MutagenesisJohn J. Holland, Esteban Domingo, Juan Carlos de la Torre, David A. Steinhauer · 1990 · Journal of Virology
- Long-Term Transmission of Defective RNA Viruses in Humans and Aedes MosquitoesJohn Aaskov, Katie Buzacott, Hlaing Myat Thu, Kym Lowry, Edward Charles Holmes · 2006 · Science
- Protein dynamics and allostery: an NMR viewShiou‐Ru Tzeng, Charalampos G. Kalodimos · 2010 · Current Opinion in Structural Biology
- Evolvability of an RNA virus is determined by its mutational neighbourhoodChristina L. Burch, Lin Chao · 2000 · Nature
- Naturally Occurring Variants of Hepatitis B VirusStephan Günther, Lutz Fischer, Irmgard Pult, Martina R. Sterneck, Hans Will · 1999 · Advances in virus research
- Modulation of Poliovirus Replicative Fitness in HeLa Cells by Deoptimization of Synonymous Codon Usage in the Capsid RegionCara Carthel Burns, Jing Shaw, Raymond P. Campagnoli, Jaume C. Jorba, Annelet Vincent, Jacqueline Quay, Olen M. Kew · 2006 · Journal of Virology
- HIV vaccine design: insights from live attenuated SIV vaccinesWayne Chester Koff, Philip R. Johnson, David I. Watkins, Dennis R. Burton, Jeffrey D. Lifson, Kim J. Hasenkrug, Adrian B. McDermott, Alan M. Schultz, Timothy J. Zamb, Rosanne Boyle et al. · 2005 · Nature Immunology
- The Origins of Life: Old Problems, New ChemistriesStephen Mann · 2012 · Angewandte Chemie International Edition
- Persistent Hepatitis C Virus Infection In Vitro: Coevolution of Virus andHostJin Zhong, Pablo Gastaminza, Josan Chung, Zania Stamataki, Masanori Isogawa, Guofeng Cheng, Jane A. McKeating, Francis V. Chisari · 2006 · Journal of Virology
- Evolution of multi-drug resistant hepatitis B virus during sequential therapyHyung Joon Yim, Munira Hussain, Ying Liu, Stephen N. Wong, Scott K. Fung, Anna Suk-Fong Lok · 2006 · Hepatology
- Arbovirus high fidelity variant loses fitness in mosquitoes and miceLark L. Coffey, Yasnee Beeharry, Antonio V. Bordería, Hervé Blanc, Marco Vignuzzi · 2011 · Proceedings of the National Academy of Sciences
- Identification of Unique Hepatitis C Virus Quasispecies in the Central Nervous System and Comparative Analysis of Internal Translational Efficiency of Brain, Liver, and Serum VariantsDaniel M. Forton, Peter Karayiannis, Nadiya Mahmud, Simon David Taylor-Robinson, Howard C. Thomas · 2004 · Journal of Virology
- Hepatitis C viruses : genomes and molecular biologySeng‐Lai Tan · 2006
- Long-Term Inhibition of HIV-1 Infection in Primary Hematopoietic Cells by Lentiviral Vector Delivery of a Triple Combination of Anti-HIV shRNA, Anti-CCR5 Ribozyme, and a Nucleolar-Localizing TAR DecoyMing-Jie Li, James Kim, Shirley Xin Li, John A. Zaia, Jiing‐Kuan Yee, Joseph S. Anderson, Ramesh Akkina, John J. Rossi · 2005 · Molecular Therapy
- Complete genome analysis of RFLP 184 isolates of porcine reproductive and respiratory syndrome virusJun Han, Yue Wang, Kay S. Faaberg · 2006 · Virus Research
- Unifying Evolutionary DynamicsKaren M. Page · 2002 · Journal of Theoretical Biology
- Single Amino Acid Changes Can Influence Titer, Heparin Binding, and Tissue Tropism in Different Adeno-Associated Virus SerotypesZhijian Wu, Aravind Asokan, Joshua C. Grieger, Lakshmanan Govindasamy A, Mavis Agbandje‐McKenna, Richard Jude Samulski · 2006 · Journal of Virology
- Natural killer cell memorySilke Paust, Ulrich H. von Andrian · 2011 · Nature Immunology
- Effects of Defective Interfering Viruses on Virus Replication and Pathogenesis In Vitro and In VivoLaurent Roux, Anne E. Simon, John J. Holland · 1991 · Advances in virus research
- The proportion of revertant and mutant phage in a growing population, as a function of mutation and growth rateEduard Batschelet, Esteban Domingo, Charles Weissmann · 1976 · Gene
- Mobile elements and diseaseHaig H. Kazazian · 1998 · Current Opinion in Genetics & Development
- Selection Pressure From Neutralizing Antibodies Drives Sequence Evolution During Acute Infection With Hepatitis C VirusKimberly A. Dowd, Dale M. Netski, Xiao–Hong Wang, Andrea L. Cox, Stuart C. Ray · 2009 · Gastroenterology
- Pol gene quasispecies of human immunodeficiency virus: mutations associated with drug resistance in virus from patients undergoing no drug therapyIsabel Nájera, África Holguín, Miguel E. Quiñones‐Mateu, María Ángeles Muñoz‐Fernández, R Nájera, Cecilio López‐Galíndez, Esteban Domingo · 1995 · Journal of Virology
- Recombination in the Genesis and Evolution of Hepatitis B Virus GenotypesPeter Simmonds, Sofie Midgley · 2005 · Journal of Virology
- Recombination leads to the rapid emergence of HIV-1 dually resistant mutants under selective drug pressure.Laure Moutouh, Jacques Corbeil, D. D. Richman · 1996 · Proceedings of the National Academy of Sciences
- A large-scale evaluation of peptide vaccines against foot-and-mouth disease: lack of solid protection in cattle and isolation of escape mutantsOscar Alberto Taboga, Cecilia Tami, Elisa Cristina Carrillo, José Ignacio Núñez, A Rodríguez, Juan‐Carlos Sáiz, Esther Blanco, María Luz Valero, Xavier Roig, Julio A. Camarero et al. · 1997 · Journal of Virology
- Lassa Virus Infection of Rhesus Monkeys: Pathogenesis and Treatment with RibavirinPeter B. Jahrling, R. A. Hesse, Gerald A. Eddy, Karl M. Johnson, Robert T. Callis, E. L. Stephen · 1980 · The Journal of Infectious Diseases
- Cellular receptors for viruses: links to tropism and pathogenesisJürgen Schneider‐Schaulies · 2000 · Journal of General Virology
- Quantitative Deep Sequencing Reveals Dynamic HIV-1 Escape and Large Population Shifts during CCR5 Antagonist Therapy In VivoAthe M. N. Tsibris, Bette Korber, Ramy Arnaout, Carsten Russ, Chien‐Chi Lo, Thomas Leitner, Brian K. Gaschen, James P. Theiler, Roger Paredes, Zhaohui Su et al. · 2009 · PLoS ONE
- The Canyon HypothesisMichael George Rossmann · 1989 · Journal of Biological Chemistry
- Viral Population Estimation Using PyrosequencingNicholas Eriksson, Lior S. Pachter, Yumi Mitsuya, Soo‐Yon Rhee, Chunlin Wang, Baback Gharizadeh, Mostafa Ronaghi, Robert W. Shafer, Niko Beerenwinkel · 2008 · PLoS Computational Biology
- Response of Foot-and-Mouth Disease Virus to Increased Mutagenesis: Influence of Viral Load and Fitness in Loss of InfectivitySaleta Sierra, Mercedes Dávila, Pedro Ricardo Lowenstein, Esteban Domingo · 2000 · Journal of Virology
- Structure of Foot-and-Mouth Disease Virus RNA-dependent RNA Polymerase and Its Complex with a Template-Primer RNACristina Ferrer‐Orta, Armando Arias, Rosa Pérez-Luque, Cristina Escarmı́s, Esteban Domingo, Núria Verdaguer · 2004 · Journal of Biological Chemistry
- Viral error catastrophe by mutagenic nucleosidesAnderson, Jon P., Daifuku, Richard, Loeb, Lawrence A. · 2004 · Annual Review of Microbiology
- Effect of route of inoculation on experimental respiratory viral disease in volunteers and evidence for airborne transmissionR. B. Couch, T. R. Cate, R. Gordon Douglas, Peter J. Gerone, Vernon Knight · 1966 · Bacteriological Reviews
- Genetic Lesions Associated with Muller's Ratchet in an RNA VirusCristina Escarmı́s, Mercedes Dávila, Nathalie Charpentier, María Alma Bracho, Andrés Moyá, Esteban Domingo · 1996 · Journal of Molecular Biology
- DNA bar coding and pyrosequencing to identify rare HIV drug resistance mutationsChristian Hoffmann, Nana K. Minkah, Jeremy N. Leipzig, Gary Wang, Max Q. Arens, Pablo Tebas, Frederic D. Bushman · 2007 · Nucleic Acids Research
- The Togaviruses: Biology, Structure, ReplicationRobert Walter Schlesinger · 2012
- Molecular epidemiology of HIV-1 genetic forms and its significance for vaccine development and therapyMichael M. Thomson, Lucía Pérez-Álvarez, Rafael Nájera · 2002 · The Lancet Infectious Diseases
- Production of resistant HIV mutants during antiretroviral therapyRuy Miguel Ribeiro, Sebastian Bonhoeffer · 2000 · Proceedings of the National Academy of Sciences
- Genetic Characteristics of Conditional Lethal Mutants of Vesicular Stomatitis Virus Induced by 5-Fluorouracil, 5-Azacytidine, and Ethyl Methane SulfonateC. Pringle · 1970 · Journal of Virology
- RNA editing enzyme adenosine deaminase is a restriction factor for controlling measles virus replication that also is required for embryogenesisSimone Visosky Ward, Cyril X. George, Megan J. Welch, Li‐Ying Liou, Bumsuk Hahm, Hanna A. Lewicki, Juan Carlos de la Torre, Charles E. Samuel, Michael B. A. Oldstone · 2010 · Proceedings of the National Academy of Sciences
- Foot-and-Mouth Disease Virus Virulent for Cattle Utilizes the Integrin α v β 3 as Its ReceptorSherry Neff, Daniel Sá‐Carvalho, Elizabeth A. Rieder, Peter W. Mason, Scott D. Blystone, Eric J. Brown, Barry Baxt · 1998 · Journal of Virology
- Parvovirus host range, cell tropism and evolutionKarsten Hueffer, Colin R. Parrish · 2003 · Current Opinion in Microbiology
- Genetic Bottlenecks Reduce Population Variation in an Experimental RNA Virus PopulationHongye Li, Marilyn J. Roossinck · 2004 · Journal of Virology
- Development of Antiretroviral Drug ResistanceMark A. Wainberg, Gerasimos J. Zaharatos, BLUMA G. BRENNER · 2011 · New England Journal of Medicine
- Broad spectrum of in vivo forward mutations, hypermutations, and mutational hotspots in a retroviral shuttle vector after a single replication cycle: deletions and deletions with insertions.Vinay K. Pathak, Howard M. Temin · 1990 · Proceedings of the National Academy of Sciences
- Drug interactions modulate the potential for evolution of resistanceJean-Baptiste Michel, Pamela J. Yeh, Remy Chait, Robert C. Moellering, Roy Kishony · 2008 · Proceedings of the National Academy of Sciences
- Minority Quasispecies of Drug‐Resistant HIV‐1 That Lead to Early Therapy Failure in Treatment‐Naive and ‐Adherent PatientsKarin Jutta Metzner, Stefano G. Giulieri, Stefanie Andrea Knoepfel, Pia Rauch, Philippe Bürgisser, Sabine Yerly, Huldrych F. Günthard, Matthias L. Cavassini · 2008 · Clinical Infectious Diseases
- Nucleotide sequence heterogeneity of the RNA from a natural population of foot-and-mouth-disease virusEsteban Domingo, Mercedes Dávila, Juan Ortı́n · 1980 · Gene
- Ultra‐Deep Pyrosequencing of Hepatitis B Virus Quasispecies from Nucleoside and Nucleotide Reverse‐Transcriptase Inhibitor (NRTI)–Treated Patients and NRTI‐Naive PatientsSeverine Margeridon‐Thermet, Nancy S. Shulman, Aijaz Ahmed, Rajin Shahriar, Tommy F. Liu, Chunlin Wang, Susan Holmes, Farbod Babrzadeh, Baback Gharizadeh, Bozena Hanczaruk et al. · 2009 · The Journal of Infectious Diseases
- Pre‐existing Minority Drug‐Resistant HIV‐1 Variants, Adherence, and Risk of Antiretroviral Treatment FailureRoger Paredes, Christina M. Lalama, Heather Jane Ribaudo, Bruce R. Schackman, Cecilia M. Shikuma, Francoise F. Giguel, William A. Meyer, Victoria A. Johnson, Susan A. Fiscus, Richard T. D’Aquila et al. · 2010 · The Journal of Infectious Diseases
- HIGH NEGATIVE INTERFERENCE OVER SHORT SEGMENTS OF THE GENETIC STRUCTURE OF BACTERIOPHAGE T4Martha Chase, A. H. Doermann · 1958 · Genetics
- Neutralizing antibody to human rhinovirus 14 penetrates the receptor-binding canyonThomas J. Smith, Elaine S. Chase, Timothy J. Schmidt, Norman H. Olson, Timothy S. Baker · 1996 · Nature
- Early changes in hepatitis C viral quasispecies during interferon therapy predict the therapeutic outcomePatrizia Farci, Rita Strazzera, Harvey J. Alter, Stefania Farci, D Degioannis, Alessandra Coiana, Giovanna Peddis, Francesco Usai, Giancarlo Serra, Luchino Chessa et al. · 2002 · Proceedings of the National Academy of Sciences
- Crystal structure of mouse coronavirus receptor-binding domain complexed with its murine receptorGuiqing Peng, Dawei Sun, Kanagalaghatta Ramabhatta Rajashankar, Zhaohui Qian, Kathryn V. Holmes, Fang Li · 2011 · Proceedings of the National Academy of Sciences
- Error correction of next-generation sequencing data and reliable estimation of HIV quasispeciesOsvaldo Zagordi, Rolf R. Klein, Martin Däumer, Niko Beerenwinkel · 2010 · Nucleic Acids Research
- Ribavirin Causes Error Catastrophe during Hantaan Virus ReplicationWilliam E. Severson, Connie S. Schmaljohn, Ali Javadian, Colleen Beth Jonsson · 2002 · Journal of Virology
- The HIV coreceptor switch: a population dynamical perspectiveRoland R. Regoes, Sebastian Bonhoeffer · 2005 · Trends in Microbiology
- The error thresholdBiebricher, Christof K., Eigen, Manfred · 2005 · Virus Research
- A single amino acid substitution affects multiple overlapping epitopes in the major antigenic site of foot-and-mouth disease virus of serotype CMauricio G. Mateu, Miguel Ángel Martı́nez, Lorenzo Capucci, David Andreu, Ernest Giralt, Francisco Sobrino, Emiliana Brocchi, Esteban Domingo · 1990 · Journal of General Virology
- Structure of the major antigenic loop of foot‐and‐mouth disease virus complexed with a neutralizing antibody: direct involvement of the Arg‐Gly‐Asp motif in the interaction.Núria Verdaguer, Mauricio G. Mateu, David Andreu, Ernest Giralt, Esteban Domingo, Ignacio Fita · 1995 · The EMBO Journal
- Pretreatment Virus Load and Multiple Amino Acid Substitutions in the Interferon Sensitivity-Determining Region Predict the Outcome of Interferon Treatment in Patients With Chronic Genotype 1B Hepatitis C Virus InfectionKazuaki Chayama, Akihito Tsubota, Masaaki Kobayashi, K Okamoto, M Hashimoto, Yukiko Miyano, Hiromi Koike, Isao Koida, Yasuji Arase, Satoshi Saitoh et al. · 1997 · Hepatology
- What is a quasispecies?Nowak, Martin A. · 1992 · Trends in Ecology & Evolution
- Genetic variation in West Nile virus from naturally infected mosquitoes and birds suggests quasispecies structure and strong purifying selectionGreta Van Slyke, Kristen A. Bernard, Laura D. Kramer, Gregory D. Ebel · 2005 · Journal of General Virology
- Mutational fitness effects in RNA and single-stranded DNA viruses: common patterns revealed by site-directed mutagenesis studiesRafael Sanjuán · 2010 · Philosophical Transactions of the Royal Society B Biological Sciences
- Interferon Resistance of Hepatitis C Virus Genotype 1b: Relationship to Nonstructural 5A Gene Quasispecies MutationsJean–Michel Pawlotsky, Georgios S. Germanidis, Avidan Uriel Neumann, Muriel Pellerin, Pierre-Olivier Frainais, Daniel Dhumeaux · 1998 · Journal of Virology
- Selection of hepatitis B virus polymerase mutants with enhanced replication by lamivudine treatment after liver transplantationC.–Thomas Bock, Hans Ludger Tillmann, Joseph Torresi, Jurgen L. Klempnauer, Stephen Locarnini, Michael Peter Manns, Christian Trautwein · 2002 · Gastroenterology
- Nevirapine-resistant human immunodeficiency virus: kinetics of replication and estimated prevalence in untreated patientsDiane V. Havlir, Scott W. Eastman, Anthony C. Gamst, Douglas D. Richman · 1996 · Journal of Virology
- Paramyxovirus mRNA editing, the ‘rule of six’ and error catastrophe: a hypothesisDaniel Kolakofsky, Laurent Roux, Dominique Garcin, Rob W. H. Ruigrok · 2005 · Journal of General Virology
- Viral RNA Mutations Are Region Specific and Increased by Ribavirin in a Full-Length Hepatitis C Virus Replication SystemAna Maria Contreras, Yoichi Hiasa, Wenping He, Adam M. Terella, Emmett V. Schmidt, Raymond T. Chung · 2002 · Journal of Virology
- RNA virus quasispecies populations can suppress vastly superior mutant progenyJuan Carlos de la Torre, John J. Holland · 1990 · Journal of Virology
- Memory in Viral QuasispeciesCarmen M. Ruiz-Jarabo, Armando Arias, Éric Baranowski, Cristina Escarmı́s, Esteban Domingo · 2000 · Journal of Virology
- Molecular determinants of macrophage tropism and viral persistence: importance of single amino acid changes in the polymerase and glycoprotein of lymphocytic choriomeningitis virusMehrdad Matloubian, S R Kolhekar, T. Somasundaram, Rafi Ahmed · 1993 · Journal of Virology
- Suppression of viral infectivity through lethal defectionAna Grande-Pérez, Ester Lázaro, Pedro Ricardo Lowenstein, Esteban Domingo, Susanna C. Manrubia · 2005 · Proceedings of the National Academy of Sciences
- Distribution of Fitness and Virulence Effects Caused by Single-Nucleotide Substitutions in Tobacco Etch VirusPurificación Carrasco, Francisca de la Iglesia, Santiago F. Elena · 2007 · Journal of Virology
- The Fittest versus the Flattest: Experimental Confirmation of the Quasispecies Effect with Subviral PathogensFrancisco M. Codoñer, José‐Antonio Daròs, Ricard V. Solé, Santiago F. Elena · 2006 · PLoS Pathogens
- Lymphoid reservoirs of antigen-specific memory T helper cellsNicolas Fazilleau, Michael D. Eisenbraun, Laurent P. Malherbe, Jessica N. Ebright, Rebecca R. Pogue-Caley, Louise J. McHeyzer‐Williams, Michael G. McHeyzer‐Williams · 2007 · Nature Immunology
- Quasispecies Made SimpleJ. J. Bull, Lauren W. Ancel, Michael Lachmann · 2005 · PLoS Computational Biology
- Muller's ratchet decreases fitness of a DNA-based microbe.Dan I. Andersson, Diarmaid Hughes · 1996 · Proceedings of the National Academy of Sciences
- Experimental evolution reveals natural selection on standing genetic variationHenrique Teotónio, Ivo M. Chelo, Martina Bradić, Michael R. Rose, Anthony D. Long · 2009 · Nature Genetics
- Mechanisms of viral emergenceEsteban Domingo · 2010 · Veterinary Research
- An overview of occult hepatitis B virus infectionZeinab Nabil Ahmed Said · 2011 · World Journal of Gastroenterology
- Cell culture and infection system for hepatitis C virusTakanobu Kato, Tomoko Date, Asako Murayama, Kenichi Morikawa, Daisuke Akazawa, Takaji Wakita · 2006 · Nature Protocols
- APOBEC3G Contributes to HIV-1 Variation through Sublethal MutagenesisHolly A. Sadler, Mark D. Stenglein, Reuben S. Harris, Louis M. Mansky · 2010 · Journal of Virology
- Genetic bottlenecks and population passages cause profound fitness differences in RNA virusesDavid K. Clarke, Elizabeth A. Duarte, Andrés Moyá, Santiago F. Elena, Esteban Domingo, John J. Holland · 1993 · Journal of Virology
- Coordinate linkage of HIV evolution reveals regions of immunological vulnerabilityVincent Dahirel, Karthik Shekhar, Florencia Pereyra, Toshiyuki Miura, Mikita Artyomov, Shiv Talsania, Todd M. Allen, Marcus A. Altfeld, Mary N Carrington, Darrell J. Irvine et al. · 2011 · Proceedings of the National Academy of Sciences
- The origin of genetic information: viruses as modelsManfred Eigen · 1993 · Gene
- Factors that Affect the Horizontal Transfer of Transposable ElementsJoana Caldeira Fernandes da Silva, Élgion L. S. Loreto, Jonathan B. Clark · 2004 · Current Issues in Molecular Biology
- Rapid selection of genetic and antigenic variants of foot-and-mouth disease virus during persistence in cattleFátima Gebauer, Juan Carlos de la Torre, I. Gomes, Mauricio G. Mateu, H. Barahona, B. Tiraboschi, Ingrid Evelyn Bergmann, P A de Mello, Esteban Domingo · 1988 · Journal of Virology
- What Is a Quasispecies?Christof Κ. Biebricher, Manfred Eigen · 2006 · Springer eBooks
- Identification of a ribavirin-resistant NS5B mutation of hepatitis C virus during ribavirin monotherapyKung Chia Young · 2003 · Hepatology
- Viruses at the Edge of AdaptationEsteban Domingo · 2000 · Virology
- Transition between stochastic evolution and deterministic evolution in the presence of selection: general theory and application to virologyRouzine, I. M., Rodrigo, A., Coffin, J. M. · 2001 · Microbiology and Molecular Biology Reviews
- Clinical impact of occult HBV infectionsIsabelle Chemin, CHRISTIAN G. TREPO · 2005 · Journal of Clinical Virology
- Multiploid Inheritance of HIV-1 during Cell-to-Cell InfectionArmando Del Portillo, Joseph Tripodi, Vesna Najfeld, Dominik Wodarz, David N. Levy, Benjamin K. Chen · 2011 · Journal of Virology
- Cell Recognition by Foot-and-Mouth Disease Virus That Lacks the RGD Integrin-Binding Motif: Flexibility in Aphthovirus Receptor UsageÉric Baranowski, Carmen M. Ruiz-Jarabo, Noemı́ Sevilla, David Andreu, Ewald Beck, Esteban Domingo · 2000 · Journal of Virology
- The Organisation of Ebola Virus Reveals a Capacity for Extensive, Modular PolyploidyDaniel R. Beniac, Pasquale L. Melito, Shauna L. deVarennes, Shannon L. Hiebert, Melissa J. Rabb, Lindsey L. Lamboo, Steven M. Jones, Timothy F. Booth · 2012 · PLoS ONE
- Massive APOBEC3 Editing of Hepatitis B Viral DNA in CirrhosisJean‐Pierre Vartanian, Michel Henry, Agnès Marchio, Rodolphe Suspène, Marie-Ming Aynaud, Denise Guétard, Minerva Cervantes-Gonzalez, Carlo Battiston, Vincenzo Mazzaferro, Pascal Pineau et al. · 2010 · PLoS Pathogens
- Epistasis between deleterious mutations and the evolution of recombinationRoger D. Kouyos, Olin Silander, Sebastian Bonhoeffer · 2007 · Trends in Ecology & Evolution
- Recombination Rate and Selection Strength in HIV Intra-patient EvolutionRichard A. Neher, Thomas Leitner · 2010 · PLoS Computational Biology
- An alternative molecular mechanism of action of 5-fluorouracil, a potent anticancer drugKalpana Ghoshal, Samson T. Jacob · 1997 · Biochemical Pharmacology
- Point mutations in the S protein connect the sialic acid binding activity with the enteropathogenicity of transmissible gastroenteritis coronavirusChristine D. Krempl, Beate Schultze, Hubert Laude, Georg Herrler · 1997 · Journal of Virology
- Host Alternation of Chikungunya Virus Increases Fitness while Restricting Population Diversity and Adaptability to Novel Selective PressuresLark L. Coffey, Marco Vignuzzi · 2010 · Journal of Virology
- Predictors of virological rebound in HIV-1-infected patients initiating a protease inhibitor-containing regimenVincent Le Moing, Geneviève Chêne, Patrizia Carrieri, Ahmadou Alioum, Françoise Brun‐Vézinet, Lionel Piroth, Jill‐Patrice Cassuto, Jean‐Paul Moatti, François Raffi, Catherine Leport · 2002 · AIDS
- Structure and Function of Phage RNACharles Weissmann, Martin Billeter, Howard M. Goodman, J Hindley, Hans Hermann Weber · 1973 · Annual Review of Biochemistry
- Molecular basis of human immunodeficiency virus drug resistance: An updateLuis Menéndez‐Arias · 2009 · Antiviral Research
- Structure and receptor bindingTerry Jackson, Andrew M. Q. King, David Ian Stuart, Elizabeth E. Fry · 2003 · Virus Research
- Ultra-deep sequencing for the analysis of viral populationsNiko Beerenwinkel, Osvaldo Zagordi · 2011 · Current Opinion in Virology
- Cellular receptors for animal virusesThomas L. Lentz · 1995 · Trends in Microbiology
- Analysis of Genotypes and Amino Acid Residues 2209 to 2248 of the Ns5a Region of Hepatitis C Virus in Relation to the Response to Interferon–β TherapyMasayuki Kurosaki, N Enomoto, Takeshi Murakami, I Sakuma, Yasuhiro Asahina, Chikara Yamamoto, Tamako Ikeda, Shinichi Tozuka, Namiki Izumi, Fumiaki Marumo et al. · 1997 · Hepatology
- Antiviral treatment of argentine hemorrhagic feverDelia Alcira Enria, Julio I. Maiztegui · 1994 · Antiviral Research
- Optimal Drug Synergy in Antimicrobial TreatmentsJoseph P. Torella, Remy Chait, Roy Kishony · 2010 · PLoS Computational Biology
- Lethal mutagenesis of the prototypic arenavirus lymphocytic choriomeningitis virus (LCMV)Carmen M. Ruiz-Jarabo, Calvin Ly, Esteban Domingo, Juan Carlos de la Torre · 2003 · Virology
- Productive Replication of Hepatitis C Virus in Perihepatic Lymph Nodes In Vivo: Implications of HCV LymphotropismSampa Pal, Daniel G. Sullivan, Sean Kim, K. Kay–Yin Lai, John Kae, Scott J. Cotler, Robert L. Carithers, Brent Lee Wood, James D. Perkins, David R. Gretch · 2006 · Gastroenterology
- The red queen reigns in the kingdom of RNA viruses.David K. Clarke, Elizabeth A. Duarte, Santiago F. Elena, Andrés Moyá, Esteban Domingo, John J. Holland · 1994 · Proceedings of the National Academy of Sciences
- Use of Massively Parallel Ultradeep Pyrosequencing To Characterize the Genetic Diversity of Hepatitis B Virus in Drug-Resistant and Drug-Naive Patients and To Detect Minor Variants in Reverse Transcriptase and Hepatitis B S AntigenMariacarmela Solmone, Donatella Vincenti, Mattia Prosperi, Alessandro Bruselles, Giuseppe Ippolito, Maria Rosaria Capobianchi · 2008 · Journal of Virology
- Generation and Characterization of Recombinant Pandemic Influenza A(H1N1) Viruses Resistant to Neuraminidase InhibitorsAndrés Pizzorno, Xavier Bouhy, Yacine Abed, Guy Boivin · 2010 · The Journal of Infectious Diseases
- Drastic Fitness Loss in Human Immunodeficiency Virus Type 1 upon Serial Bottleneck EventsEloísa Yuste, Sonsoles Sánchez‐Palomino, Concha Casado, Esteban Domingo, Cecilio López‐Galíndez · 1999 · Journal of Virology
- Incorporation fidelity of the viral RNA-dependent RNA polymerase: a kinetic, thermodynamic and structural perspectiveChristian D. Castro, Jamie J. Arnold, Craig E. Cameron · 2004 · Virus Research
- Curing of foot-and-mouth disease virus from persistently infected cells by ribavirin involves enhanced mutagenesisAntero Airaksinen, Nonia Pariente, Luis Menéndez‐Arias, Esteban Domingo · 2003 · Virology
- Remote Site Control of an Active Site Fidelity Checkpoint in a ViralRNA-dependent RNAPolymeraseJamie J. Arnold, Marco Vignuzzi, Jeffrey K. Stone, Raul Andino, Craig E. Cameron · 2005 · Journal of Biological Chemistry
- Analysis of Genetic Bottlenecks during Horizontal Transmission of Cucumber Mosaic VirusAkhtar Ali, Hongye Li, William L. Schneider, Diana J. Sherman, Stewart M. Gray, Dawn Smith, Marilyn J. Roossinck · 2006 · Journal of Virology
- Evolutionary Influences in Arboviral DiseaseScott C. Weaver · 2006 · Current topics in microbiology and immunology
- A single amino acid substitution in the V1 loop of human immunodeficiency virus type 1 gp120 alters cellular tropismMark T. Boyd, Guy R. Simpson, Alan J. Cann, M A Johnson, Robin A. Weiss · 1993 · Journal of Virology
- Treatment of Bolivian Hemorrhagic Fever with Intravenous RibavirinPaul Evan Kilgore, Thomas G. Ksiazek, Pierre E. Rollin, James N. Mills, M. R. Villagra, M. J. Montenegro, M. A. Costales, L. C. Paredes, Clarence J. Peters · 1997 · Clinical Infectious Diseases
- Ribavirin Induces Error-Prone Replication of GB Virus B in Primary Tamarin HepatocytesRobert E. Lanford, Deborah Chavez, Bernadette Guerra, Johnson Y. N. Lau, Zhi Hong, Kathleen M. Brasky, Burton Beames · 2001 · Journal of Virology
- Efficient Virus Extinction by Combinations of a Mutagen and Antiviral InhibitorsNonia Pariente, Saleta Sierra, Pedro Ricardo Lowenstein, Esteban Domingo · 2001 · Journal of Virology
- Correlation between amount of virus with altered nucleotide sequence and the monkey test for acceptability of oral poliovirus vaccine.Konstantin Chumakov, Laraine Powers, Kevin E. Noonan, Igor B. Roninson, Inessa S. Levenbook · 1991 · Proceedings of the National Academy of Sciences
- Multiple molecular pathways for fitness recovery of an RNA virus debilitated by operation of Muller’s ratchet 1 1Edited by J. KarnCristina Escarmı́s, Mercedes Dávila, Esteban Domingo · 1999 · Journal of Molecular Biology
- 5′-Terminal Deletions Occur in Coxsackievirus B3 during Replication in Murine Hearts and Cardiac Myocyte Cultures and Correlate with Encapsidation of Negative-Strand Viral RNAK.-S. Kim, Steve Tracy, William E. Tapprich, Jennifer M. Bailey, C.-K. Lee, K. Kim, William H. Barry, Nora M. Chapman · 2005 · Journal of Virology
- Evolutionary Transition toward Defective RNAs That Are Infectious by ComplementationJuan García‐Arriaza, Susanna C. Manrubia, Miguel Toja, Esteban Domingo, Cristina Escarmı́s · 2004 · Journal of Virology
- Occult hepatitis B infection and HBV replicative activity in patients with cryptogenic cause of hepatocellular carcinomaDanny K.-H. Wong, Fung Yu Huang, Ching‐Lung Lai, Ronnie T. P. Poon, Wai‐Kay Seto, James Fung, Ivan Fan‐Ngai Hung, Man‐Fung Yuen · 2011 · Hepatology
- Antigenic structure of the human respiratory syncytial virus G glycoprotein and relevance of hypermutation events for the generation of antigenic variants.I Mart√≠nez, José Antonio Melero, Joaquı́n Dopazo · 1997 · Journal of General Virology
- Evolution of the capsid protein genes of foot-and-mouth disease virus: antigenic variation without accumulation of amino acid substitutions over six decadesMiguel Ángel Martı́nez, Joaquı́n Dopazo, J Hernández, Mauricio G. Mateu, Francisco Sobrino, Esteban Domingo, N J Knowles · 1992 · Journal of Virology
- The Evolution of HIVKeith A. Crandall · 1999 · Johns Hopkins University Press eBooks
- In vivo sequence diversity of the protease of human immunodeficiency virus type 1: presence of protease inhibitor-resistant variants in untreated subjectsW J Lech, G Wang, Y L Yang, Y Chee, Karin S. Dorman, D McCrae, Laura C. Lazzeroni, John W. Erickson, Janet S. Sinsheimer, Andrew H. Kaplan · 1996 · Journal of Virology
- HLA/KIR Restraint of HIV: Surviving the FittestArman A. Bashirova, Rasmi Thomas, Mary N Carrington · 2011 · Annual Review of Immunology
- Emerging Viruses1993
- Animal Viruses: Molecular BiologyBrian W. J. Mahy · 2008 · Emerging infectious diseases
- Molecular indetermination in the transition to error catastrophe: Systematic elimination of lymphocytic choriomeningitis virus through mutagenesis does not correlate linearly with large increases in mutant spectrum complexityAna Grande-Pérez, Saleta Sierra, Maria Graciela Castro, Esteban Domingo, Pedro Ricardo Lowenstein · 2002 · Proceedings of the National Academy of Sciences
- HIV-1 reverse transcriptase inhibitor resistance mutations and fitness: A view from the clinic and ex vivoJavier Martínez‐Picado, Miguel Ángel Martı́nez · 2008 · Virus Research
- Foot-and-Mouth Disease Virus Mutant with Decreased Sensitivity to Ribavirin: Implications for Error CatastropheMacarena Sierra, Antero Airaksinen, Claudia González-López, Rubén Agudo, Armando Arias, Esteban Domingo · 2006 · Journal of Virology
- Retroviral recombination can lead to linkage of reverse transcriptase mutations that confer increased zidovudine resistancePaul Kellam, Brendan A. Larder · 1995 · Journal of Virology
- Copy Number Variation of KIR Genes Influences HIV-1 ControlKimberly Pelak, Anna C. Need, Jacques Fellay, Kevin V. Shianna, Sheng Feng, Thomas Jacob Urban, Dongliang Ge, Andrea De Luca, Javier Martínez‐Picado, Steven M. Wolinsky et al. · 2011 · PLoS Biology
- Mechanisms of Retroviral RecombinationMatteo Negroni, Henri C. BUC · 2001 · Annual Review of Genetics
- Beyond the Consensus: Dissecting Within-Host Viral Population Diversity of Foot-and-Mouth Disease Virus by Using Next-Generation Genome SequencingCaroline F. Wright, Marco J. Morelli, Gaël Thébaud, Nick J. Knowles, Pawel Herzyk, David James Paton, Daniel T. Haydon, Donald P. King · 2010 · Journal of Virology
- Hepatitis C Virus Transmission Bottlenecks Analyzed by Deep SequencingGary P. Wang, Scott A. Sherrill-Mix, Kyong‐Mi Chang, Christopher Quince, Frederic D. Bushman · 2010 · Journal of Virology
- Integrin αvβ8 Functions as a Receptor for Foot-and-Mouth Disease Virus: Role of the β-Chain Cytodomain in Integrin-Mediated InfectionTerry Jackson, Stuart A. Clark, Stephen Berryman, Alison Burman, Stephanie Cambier, Dezhi Mu, Stephen L. Nishimura, Andrew M. Q. King · 2004 · Journal of Virology
- Viral genetic variation: hepatitis B virus as a clinical exampleWilliam F. Carman, H. Thomas, Esteban Domingo · 1993 · The Lancet
- Viral entry and escape from antibody-mediated neutralization influence hepatitis C virus reinfection in liver transplantationSamira Fafi‐Kremer, Isabel Fofana, Eric Soulier, Patric Carolla, Philip Meuleman, Geert G Leroux-Roels, Arvind H. Patel, François‐Loïc Cosset, Patrick Pessaux, Michel Doffoël et al. · 2010 · The Journal of Experimental Medicine
- The antiviral compound enviroxime targets the 3A coding region of rhinovirus and poliovirusB.A. Heinz, Lori Vance · 1995 · Journal of Virology
- Size of genetic bottlenecks leading to virus fitness loss is determined by mean initial population fitnessIsabel S. Novella, Santiago F. Elena, Andrés Moyá, Esteban Domingo, John J. Holland · 1995 · Journal of Virology
- Crystal Structure of Reovirus Attachment Protein σ1 in Complex with Sialylated OligosaccharidesDirk M. Reiter, Johnna M. Frierson, Elizabeth Eby Halvorson, Takeshi Kobayashi, Terence S. Dermody, Thilo Stehle · 2011 · PLoS Pathogens
- Temperature-sensitive mutants of mouse hepatitis virus produce a high incidence of demyelination.Martin V. Haspel, Peter W. Lampert, M.B.A. Oldstone · 1978 · Proceedings of the National Academy of Sciences
- Coevolution of cells and viruses in a persistent infection of foot-and-mouth disease virus in cell cultureJuan Carlos de la Torre, Encarnación Martı́nez-Salas, Juana Díez, Antonio Villaverde, Fátima Gebauer, E Rocha, Mercedes Dávila, Esteban Domingo · 1988 · Journal of Virology
- Fitness Costs and Diversity of the Cytotoxic T Lymphocyte (CTL) Response Determine the Rate of CTL Escape during Acute and Chronic Phases of HIV InfectionVitaly V. Ganusov, Nilu P Goonetilleke, Michael K. P. Liu, Guido Ferrari, George M. Shaw, Andrew James McMichael, Persephone Borrow, Bette Korber, Alan S. Perelson · 2011 · Journal of Virology
- SPECTRUM AND CHARACTERISTICS OF THE VIRUS INHIBITORY ACTION OF 2-(α-HYDROXYBENZYL)-BENZIMIDAZOLEHans Joachim Eggers, Igor Tamm · 1961 · The Journal of Experimental Medicine
- The cardiovirulent phenotype of coxsackievirus B3 is determined at a single site in the genomic 5' nontranslated regionZ Tu, Nora M. Chapman, G. Hufnagel, Steve Tracy, J R Romero, William H. Barry, L Zhao, Kathleen M. Currey, Bruce A. Shapiro · 1995 · Journal of Virology
- SCY-635, a Novel Nonimmunosuppressive Analog of Cyclosporine That Exhibits Potent Inhibition of Hepatitis C Virus RNA ReplicationIn VitroSam Hopkins, Bernard Scorneaux, Zhuhui Huang, Michael G. Murray, Stephen A. Wring, Craig Smitley, Richard W. Harris, Frank Erdmann, Gunter S. Fischer, Yves Ribeill · 2009 · Antimicrobial Agents and Chemotherapy
- Mechanisms of retroviral mutationBradley D. Preston, Joseph P. Dougherty · 1996 · Trends in Microbiology
- Evolution of Circulating Wild Poliovirus and of Vaccine-Derived Poliovirus in an Immunodeficient Patient: a Unifying ModelGavrilin, Gene V., Cherkasova, Elena A., Lipskaya, Galina Y., Kew, Olen M., Agol, Vadim I. · 2000 · Journal of Virology
- Viral persistence in vivo through selection of neutralizing antibody-escape variantsAdrian Ciurea, Paul Klenerman, Lukas Hunziker, Edit J. Horváth, Beatrice M. Senn, Adrian F. Ochsenbein, Hans Hengartner, Rolf M. Zinkernagel · 2000 · Proceedings of the National Academy of Sciences
- Persistent Recognition of Autologous Virus by High-Avidity CD8 T Cells in Chronic, Progressive Human Immunodeficiency Virus Type 1 InfectionRika Draenert, Cori L. Verrill, Yanhua Tang, Todd M. Allen, Alysse Gail Wurcel, M. Boczanowski, Andreas Lechner, Arthur Y. Kim, Todd J. Suscovich, Nancy V. Brown et al. · 2003 · Journal of Virology
- Subclonal components of consensus fitness in an RNA virus cloneElizabeth A. Duarte, Isabel S. Novella, S Ledesma, David K. Clarke, Andrés Moyá, Santiago F. Elena, Esteban Domingo, John J. Holland · 1994 · Journal of Virology
- Genomic Features of Intertypic Recombinant Sabin Poliovirus Strains Excreted by Primary VaccineesCuervo, Nancy Stella, Guillot, Sophie, Romanenkova, Natalia, Combiescu, Mariana, Aubert-Combiescu, André, Seghier, Mohamed, Caro, Valérie, Crainic, Radu, Delpeyroux, Francis · 2001 · Journal of Virology
- Dynamics of HIV-1 Quasispecies during Antiviral Treatment Dissected Using Ultra-Deep PyrosequencingCharlotte Hedskog, Mattias Mild, Johanna Jernberg, Ellen Sherwood, Göran Bratt, Thomas Leitner, Joakim Lundeberg, Björn Andersson, Jan Albert · 2010 · PLoS ONE
- Emergence of the HypercycleManfred Eigen, Peter Schuster · 1979 · Springer eBooks
- Genetic variability and molecular evolution of Hepatitis A virusJuan Cristina, Mauro Costa‐Mattioli · 2007 · Virus Research
- Fine-Tuning Translation Kinetics Selection as the Driving Force of Codon Usage Bias in the Hepatitis A Virus CapsidLluís Aragonès, Susana Guix, Enric Ribes, Albert Bosch, Rosa M Pintó · 2010 · PLoS Pathogens
- Role of Methionine 184 of Human Immunodeficiency Virus Type-1 Reverse Transcriptase in the Polymerase Function and Fidelity of DNA SynthesisVirendra N. Pandey, Neerja Kaushik, Nisha Rege, Stefan G. Sarafianos, Prem Narayan Yadav, Mukund J. Modak · 1996 · Biochemistry
- Type, prevalence, and significance of core promoter/enhancer II mutations in hepatitis B viruses from immunosuppressed patients with severe liver diseaseStephan Günther, Nils Piwon, Alicja Iwanska, Ralf Schilling, H Meisel, Hans Will · 1996 · Journal of Virology
- Sex and the Evolution of Intrahost Competition in RNA Virus φ6Paul E. Turner, Lin Chao · 1998 · Genetics
- trans -Packaged West Nile Virus-Like Particles: Infectious Properties In Vitro and in Infected Mosquito VectorsFrank Scholle, Yvette A. Girard, Qizu Zhao, Stephen Higgs, Peter W. Mason · 2004 · Journal of Virology
- Identification of A Ribavirin–Resistant Ns5b Mutation of Hepatitis C Virus During Ribavirin MonotherapyKung-Chia Young, Karen L. Lindsay, Ki-Jeong Lee · 2003 · Hepatology
- The Role of Compensatory Mutations in the Emergence of Drug ResistanceAndreas Handel, Roland R. Regoes, Rustom Antia · 2006 · PLoS Computational Biology
- Trans-dominant inhibition of RNA viral replication can slow growth of drug-resistant virusesScott M. Crowder, Karla Kirkegaard · 2005 · Nature Genetics
- In vitro site-directed mutagenesis: Generation and properties of an infectious extracistronic mutant of bacteriophage QβEsteban Domingo, Richard Anthony Flavell, Charles Weissmann · 1976 · Gene
- Targeting HIV: antiretroviral therapy and development of drug resistanceLuis Menéndez‐Arias · 2002 · Trends in Pharmacological Sciences
- Monitoring of clinical and laboratory data in two cases of imported Lassa feverHERBERT E. SCHMITZ, Bernhard Köhler, Thomas Laue, Christian Drosten, Peter J. Veldkamp, Stephan Günther, Petra Emmerich, H. P. Geisen, Klaus Fleischer, Matthias F. C. Beersma et al. · 2002 · Microbes and Infection
- Systematic Replacement of Amino Acid Residues within an Arg-Gly-Asp-containing Loop of Foot-and-Mouth Disease Virus and Effect on Cell RecognitionMauricio G. Mateu, María Luz Valero, David Andreu, Esteban Domingo · 1996 · Journal of Biological Chemistry
- Receptor Tyrosine Kinase Inhibitors Block Multiple Steps of Influenza A Virus ReplicationNaveen Kumar, Yuhong Liang, Tristram G. Parslow, Yuying Liang · 2011 · Journal of Virology
- Effect of Host Species on the Distribution of Mutational Fitness Effects for an RNA VirusJasna Lalić, José M. Cuevas, Santiago F. Elena · 2011 · PLoS Genetics
- Basal Core Promoter and Precore Mutations in the Hepatitis B Virus Genome Enhance Replication Efficacy of Lamivudine-Resistant MutantsFrank Tacke, Christina Gehrke, Tom Luedde, Albert Heim, Michael Peter Manns, Christian Trautwein · 2004 · Journal of Virology
- Genomic evidence of repeat-induced point mutation (RIP) in filamentous ascomycetesA. John Clutterbuck · 2010 · Fungal Genetics and Biology
- Hepatitis B Virus Replication and Liver Disease Progression: The Impact of Antiviral TherapyYun‐Fan Liaw · 2006 · Antiviral Therapy
- Foot-and-Mouth Disease Virus Populations Are QuasispeciesEsteban Domingo, Cristina Escarmı́s, Miguel Ángel Martı́nez, Encarnación Martı́nez-Salas, Mauricio G. Mateu · 1992 · Current topics in microbiology and immunology
- Infectious bursal disease virus is an icosahedral polyploid dsRNA virusDaniel Luque, Germán Rivas, Carlos Alfonso, José L. Carrascosa, José F. Rodrígúez, José R. Castón · 2009 · Proceedings of the National Academy of Sciences
- Recovery of APOBEC3-edited human immunodeficiency virus G→A hypermutants by differential DNA denaturation PCRRodolphe Suspène, Michel Henry, Sophie Guillot, Simon Wain–Hobson, Jean‐Pierre Vartanian · 2004 · Journal of General Virology
- Low-Abundance HIV Drug-Resistant Viral Variants in Treatment-Experienced Persons Correlate with Historical Antiretroviral UseThuy Le, Jennifer Chiarella, Birgitte B. Simen, Bozena Hanczaruk, Michael Egholm, Marie Louise Landry, Kevin D. Dieckhaus, Marc I. Rosen, Michael J. Kozal · 2009 · PLoS ONE
- Evolution subverting essentiality: Dispensability of the cell attachment Arg-Gly-Asp motif in multiply passaged foot-and-mouth disease virusMiguel Ángel Martı́nez, Núria Verdaguer, Mauricio G. Mateu, Esteban Domingo · 1997 · Proceedings of the National Academy of Sciences
- Establishment of cell lines persistently infected with foot-and-mouth disease virusJuan Carlos de la Torre, Mercedes Dávila, Francisco Sobrino, Juan Ortı́n, Esteban Domingo · 1985 · Virology
- A Single Amino Acid Substitution in Nonstructural Protein 3A Can Mediate Adaptation of Foot-and-Mouth Disease Virus to the Guinea PigJosé Ignacio Núñez, Éric Baranowski, Nicolás Molina, Carmen M. Ruiz-Jarabo, Carmen Sánchez, Esteban Domingo, Francisco Sobrino · 2001 · Journal of Virology
- Quasispecies and its impact on viral hepatitisEsteban Domingo, Jordi Gomez · 2007 · Virus Research