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Giraud, C., Wabete, N., Lemeu, C., Selmaoui‐Folcher, N., Pham, D., Boulo, V., & Callac, N. (2024) · FEMS Microbiology Ecology · doi:10.1093/femsec/fiae156 · Cited by 5 · see citing works

Sex-specific gut microbiome dynamics in Labeo catla: links to reproductive hormones, metabolic dimorphism, and environmental factors

Sundaray, J. K., Mohapatra, M., Rasal, A. R., Udit, U. K., Mohanty, S., Mohanty, D., Das, I. I., Sahoo, L., & Sahoo, P. K. (2025) · Frontiers in Microbiology · doi:10.3389/fmicb.2025.1651975 · Cited by 4 · see citing works

Root exudate-mediated plant-soil feedbacks: Mechanisms, microbial interactions, and ecological consequences

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Comparative analyses of gut microbiota reveal ammonia detoxification and nitrogen assimilation in Cyprinus carpio var. specularis

Talwar, C., Nagar, S., & Negi, R. K. (2024) · Folia Microbiologica · doi:10.1007/s12223-024-01151-6 · Cited by 4 · see citing works

Macleaya cordata extract improves egg quality by altering gut health and microbiota in laying hens

Zhang, G., Song, B., Pan, X., Keerqin, C., Okasha, H., & Song, Z. (2024) · Poultry Science · doi:10.1016/j.psj.2024.104394 · Cited by 4 · see citing works

Wild gut microbiome suppresses the potentially opportunistic pathogen Aeromonas in medaka under domesticated rearing conditions

Kawano, K., Kawabe, K., Sano, Y., Hori, T., Kihara, M., Kikuchi, Y., & Itoh, H. (2025) · Animal Microbiome · doi:10.1186/s42523-025-00462-4 · Cited by 4 · see citing works

Mushroom stem-based diets elicit region-specific shifts in rainbow trout gut microbiota

Saromines, C. J., Reinoso, S., Ruiz, A., Torrecillas, S., Martín, M. L. T., Pérez-Clavijo, M., & Gisbert, E. (2025) · Scientific Reports · doi:10.1038/s41598-025-27707-1 · Cited by 4 · see citing works

Storage media and RNA extraction approaches substantially influence the recovery and integrity of livestock fecal microbial RNA

Koorakula, R., Ghanbari, M., Schiavinato, M., Wegl, G., Dohm, J. C., & Domig, K. J. (2022) · PeerJ · doi:10.7717/peerj.13547 · Cited by 4 · see citing works

Soil pH as an external filter shaping stink bug–Burkholderia gut symbiosis

Itoh, H., Shimoji, H., Nakane, D., Jang, S., & Kikuchi, Y. (2026) · Microbiome · doi:10.1186/s40168-026-02402-z · Cited by 3 · see citing works

Intestinal microbiocenos of rainbow trout in the conditions of a cage farm

Zaitseva, Y. V., Dokolin, D. A., & Zlobin, I. V. (2023) · Agrarian Bulletin of the · doi:10.32417/1997-4868-2022-227-12-42-53 · Cited by 3 · see citing works

Difference in composition and functional analysis of bacterial communities between Mytilus galloprovincialis gills and surrounding water in a brackish inshore bay, analyzed by 16S rDNA multi-amplicon sequencing

Zardinoni, G., Deb, S., Ravi, S., Giagnoni, L., Fumelli, P., Tondello, A., Dacasto, M., Squartini, A., Spanu, C., Trocino, A., et al. (2024) · Annals of Microbiology · doi:10.1186/s13213-024-01749-8 · Cited by 3 · see citing works

16S rRNA metabarcoding unearths responses of rare gut microbiome of fathead minnows exposed to benzo[a]pyrene

DeBofsky, A., Xie, Y., Challis, J. K., Ankley, P. J., Brinkmann, M., Jones, P. D., & Giesy, J. P. (2021) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2021.151060 · Cited by 3 · see citing works

Interactions between the epithelial barrier and the microbiota in the reproductive tract

Takada, K., Komine‐Aizawa, S., Tsuji, N. M., & Hayakawa, S. (2021) · Elsevier eBooks · doi:10.1016/b978-0-12-818508-7.00002-6 · Cited by 3 · see citing works

Bioactive compounds from aquatic and terrestrial plants: potential and application in aquaculture

Phan, P.-L., Nguyen-Thi, T.-H., Nguyen, H., & Nguyen, P.-T. (2025) · Aquatic Ecology · doi:10.1007/s10452-025-10221-x · Cited by 2 · see citing works

Localized gut tissue and digesta bacterial communities of five pelagic fish species from the Atlantic Ocean: Insights from 16S rRNA gene diversity

Varela, J. L., Nikouli, E., Medina, A., Papaspyrou, S., & Kormas, K. A. (2025) · Fisheries Research · doi:10.1016/j.fishres.2025.107594 · Cited by 2 · see citing works

The impact of early-life rearing conditions on the porcine gut microbiota and immune system

Comer, L., Akram, M. Z., Zhao, H., Huo, P., Sureda, E. A., Xiao, C., Usman, H. U. K., Siegien, P., Wavreille, J., Aerts, J., et al. (2025) · Animal Microbiome · doi:10.1186/s42523-025-00492-y · Cited by 2 · see citing works

The Fecal Mycobiome in Chronic Pancreatitis Is Characterized by an Increase in Candida species and Nakaseomyces

Podgorny, P. M., Weiß, S., Bang, C., Rühlemann, M. C., Wiese, M. L., Völzke, H., Franke, A., Zeißig, S., Sendler, M., Aghdassi, A. A., et al. (2025) · Clinical and Translational Gastroenterology · doi:10.14309/ctg.0000000000000855 · Cited by 1 · see citing works

Modulation of Digestive Enzyme Activities and Intestinal γ-Proteobacteria in Gilthead Sea Bream Fed High-Fat Diets Supplemented with HIDROX® Olive Oil Extract

García-Meilán, I., Balbuena-Pecino, S., Montblanch, M., Ramos‐Romero, S., Fontanillas, R., Gutiérrez, J., Capilla, E., Navarro, I., & Gallardo, Á. (2025) · Animals · doi:10.3390/ani15142102 · Cited by 1 · see citing works

Understanding the Interplay Between Diet, Feed Ingredients and Gut Microbiota for Sustainable Aquaculture

Naya-Català, F., Wiggers, G. A., Piazzon de Haro, M. C., López-Martínez, M. I., Estensoro, I., Calduch-Giner, J. À., Martínez-Cuesta, M. C., Requena, T., Sitjà‐Bobadilla, A., Miguel, M., et al. (2022) · Frontiers research topics · doi:10.3389/978-2-88974-715-3 · Cited by 1 · see citing works

MICROBIOTA AND REPRODUCTION IN AGRICULTURAL MAMMALS(review)

Popov, D. V. (2022) · Sel skokhozyaistvennaya Biologiya · doi:10.15389/agrobiology.2022.2.222eng · Cited by 1 · see citing works

Fusion data from FT-IR and MALDI-TOF MS result in more accurate classification of specific microbiota

Gao, W., Han, Y., Chen, L., Tan, X., Liu, J., Xie, J., Li, B., Zhao, H., Yu, S., Tu, H., et al. (2023) · The Analyst · doi:10.1039/d3an01108a · Cited by 1 · see citing works

Hemolymph microbiota and immune effectors’ expressions driven by geographical rearing acclimation of the aquacultured Penaeus stylirostris

Perez, V., Boulo, V., de Lorgeril, J., Pham, D., Ansquer, D., Plougoulen, G., Ballan, V., Lam, J.-S., Romatif, O., Luyer, J. L., et al. (2025) · Animal Microbiome · doi:10.1186/s42523-025-00376-1 · Cited by 1 · see citing works

Identification of Core Yeast Species and Microbe-Microbe Interactions Impacting Larval Growth of Drosophila in the WildPreprint

Mure, A., Sugiura, Y., Maeda, R., Honda, K., Sakurai, N., Takahashi, Y., Watada, M., Katoh, T., Gotoh, A., Gotoh, Y., et al. (2023) · eLife · doi:10.7554/elife.90148.1 · Cited by 1 · see citing works

A mikrobiom globális szerepe a „One Health” megközelítésmód szerint

Hancz, C. (2021) · Acta Agraria Kaposváriensis · doi:10.31914/aak.2512

Gastrointestinal Microbiota and Parasite-Fauna of Wild Dissostichus eleginoides Smitt, 1898 Captured at the South-Central Coast of Chile

Fernández, Í., Ríos-Escalante, P. D. L., Valenzuela, A. E., Aguayo, P., Smith, C. T., García, A., Sánchez-Alonzo, K., Oyarzún, C., & Campos, V. L. (2021) · Microorganisms · doi:10.3390/microorganisms9122522

МИКРОБИОТА И РЕПРОДУКЦИЯ У СЕЛЬСКОХОЗЯЙСТВЕННЫХ ВИДОВ МЛЕКОПИТАЮЩИХ (обзор)

Афанасьева, Ф. Н. П. З. И. К. И. В. А., & ПОПОВ, Д. В. (2022) · Sel skokhozyaistvennaya Biologiya · doi:10.15389/agrobiology.2022.2.222rus

Peer Review #3 of "Storage media and RNA extraction approaches substantially influence the recovery and integrity of livestock fecal microbial RNA (v0.1)"

(2022) · PeerJ · doi:10.7287/peerj.13547v0.1/reviews/3

Peer Review #1 of "Storage media and RNA extraction approaches substantially influence the recovery and integrity of livestock fecal microbial RNA (v0.3)"

(2022) · PeerJ · doi:10.7287/peerj.13547v0.3/reviews/1

Peer Review #1 of "Storage media and RNA extraction approaches substantially influence the recovery and integrity of livestock fecal microbial RNA (v0.2)"

(2022) · PeerJ · doi:10.7287/peerj.13547v0.2/reviews/1

Harnessing the potential of predatory protists to support a beneficial soil microbiome

Amacker, N. (2022) · doi:10.33540/1282

Peer Review #2 of "Storage media and RNA extraction approaches substantially influence the recovery and integrity of livestock fecal microbial RNA (v0.1)"

(2022) · PeerJ · doi:10.7287/peerj.13547v0.1/reviews/2

Peer Review #1 of "Storage media and RNA extraction approaches substantially influence the recovery and integrity of livestock fecal microbial RNA (v0.1)"

(2022) · PeerJ · doi:10.7287/peerj.13547v0.1/reviews/1

Identification of Key Yeast Species and Microbe-Microbe Interactions Impacting Larval Growth of Drosophila in the WildPreprint

Mure, A., Sugiura, Y., Maeda, R., Honda, K., Sakurai, N., Takahashi, Y., Watada, M., Katoh, T., Gotoh, A., Gotoh, Y., et al. (2023) · eLife · doi:10.7554/elife.90148.2

The Two Genomes of Gilthead Sea Bream (Sparus aurata): a Multi-Omics and Holobiont Approach

Naya-Català, F. (2024) · doi:10.4995/thesis/10251/205692

One Health in the Context of Global Health.

Janse, E. M. (2024) · doi:10.5463/thesis.754

Ruminal Crude Protein Degradation Determined in Sacco and by Co-Incubation of Streptomyces griseus Protease and Carbohydrases

Okon, P., Wensch-Dorendorf, M., Bachmann, M., von Soosten, D., Meyer, U., Greef, J., Dänicke, S., & Zeyner, A. (2024) · Animals · doi:10.3390/ani14202982

Study of Roots Fungal Endophytes of Cannabis (Cannabis sativa L)

Msairi, S., Maazouzi, S., Artib, M., Mouden, N., Ourras, S., Selmaoui, K., Benkirane, R., Touhami, A. O., & Douira, A. (2025) · Lecture notes in networks and systems · doi:10.1007/978-3-031-91334-1_31

The Digestive Microbiome Diversity of the Least Killifish, Heterandria formosa , and Its Implications for Host Adaptability to Varying Trophic Levels

Pluer, B. D., & Travis, J. (2025) · Environmental Microbiology Reports · doi:10.1111/1758-2229.70164

Molecular Identification, Enzymatic Activity and Antibiotic Resistance Profiles of Bacteria Isolated from Merlangius merlangus

Caglar, H. S., SAYGIN, S., & Saygın, H. (2025) · Black Sea Journal of Engineering and Science · doi:10.34248/bsengineering.1749516

Additional file 1 of Genetic selection for growth drives differences in intestinal microbiota composition and parasite disease resistance in gilthead sea bream

Piazzon, M. C., Naya-Català, F., Perera, E., Palenzuela, O. R., Sitjà‐Bobadilla, A., & Pérez-Sánchez, J. (2020) · Figshare · doi:10.6084/m9.figshare.13278398

Agriculture and the Microbiome

CAST (2020) · doi:10.62300/22gx3n60

Nutritional Strategies to Modulate Gut Microbiota and Functional Metabolism in Livestock: From Microbial Composition to Host Health Outcomes

Qadeer, S. H. (2026) · Advanced Gut & Microbiome Research · doi:10.1155/agm3/8416715

GROWTH AND DEVELOPMENT SYMPOSIUM: Promoting healthier humans through healthier livestock: Animal agriculture enters the metagenomics era12

Frank, D. N. (2010) · Journal of Animal Science · doi:10.2527/jas.2010-3392 · Cited by 11 · see citing works

A Comparative Review on Microbiota Manipulation: Lessons From Fish, Plants, Livestock, and Human Research

Brugman, S., Ikeda‐Ohtsubo, W., Braber, S., Folkerts, G., Pieterse, C. M. J., & Bakker, P. A. H. M. (2018) · Frontiers in Nutrition · doi:10.3389/fnut.2018.00080 · Cited by 127 · see citing works

Editorial: The role of microbiome in sustainable agriculture

Xue, S., Kui, L., Sharifi, R., & Chen, J. (2024) · Frontiers in Microbiology · doi:10.3389/fmicb.2024.1388926 · Cited by 3 · see citing works