Dominant Bacterial Phyla from the Human Gut Show Widespread Ability To Transform and Conjugate Bile Acids
Open accessAbstract
Our current knowledge regarding microbial bile acid transformations comes primarily from biochemical studies on a relatively small number of species or from bioinformatic predictions that rely on homology to known bile acid-transforming enzyme sequences. Therefore, much remains to be learned regarding the variety of bile acid transformations and their representation across gut microbial species.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Recent studies demonstrated that bacteria have bile acid amine N-acyltransferase activity, with dozens of bacterially conjugated amino acid amidates identified.
“Recent studies demonstrated that bacteria, in addition to the host, have bile acid amine N-acyltransferase activity, with dozens of bacterially conjugated amino acid amidates identified1–4,6,17.”
From Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase (2022) · cites this paper as [2]
The bacterial enzymes responsible for producing amino acid bile acid amidates are unknown.
“The enzymes responsible for these conjugation reactions are unknown.”
From Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase (2022) · cites this paper as [2]
Bacteria in the gastrointestinal tract produce amino acid bile acid amidates that can affect host-mediated metabolic processes.
“Bacteria in the gastrointestinal tract produce amino acid bile acid amidates that can affect host-mediated metabolic processes1–6; however, the bacterial gene(s) responsible for their production remain unknown.”
From Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase (2022) · cites this paper as [2]
An array of intestinal bacteria can catalyse the conjugation of BAs to a variety of amino acids through an unknown mechanism.
“An array of intestinal bacteria can catalyse the conjugation of BAs to a variety of amino acids through an unknown mechanism”
From Bile salt hydrolases shape the bile acid landscape and restrict Clostridioides difficile growth in the murine gut (2023) · cites this paper as [32]
BSHs are gatekeepers of bile acid metabolism, capable of reshaping the BA landscape in the gut.
“The extensive compilation of recently identified MCBAs expands the complexity of the BSH-BA pool and reinforces BSHs as the gatekeepers of bile acid metabolism, capable of reshaping the BA landscape in the gut31,32.”
From Bile salt hydrolases shape the bile acid landscape and restrict Clostridioides difficile growth in the murine gut (2023) · cites this paper as [32]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
MUSCLE: multiple sequence alignment with high accuracy and high throughput
Edgar, R. C. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh340 · Cited by 44,662 · see citing works
WebLogo: A Sequence Logo Generator: Figure 1Preprint
Crooks, G. E., Hon, G. C., Chandonia, J., & Brenner, S. E. (2004) · Genome Research · doi:10.1101/gr.849004 · Cited by 12,433 · see citing works
Accelerated Profile HMM Searches
Eddy, S. R. (2011) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1002195 · Cited by 6,975 · see citing works
Meyer, F., Paarmann, D., D'Souza, M., Olson, R., Glass, E., Kubal, M., Paczian, T., Rodriguez, A., Stevens, R. L., Wilke, A., et al. (2008) · BMC Bioinformatics · doi:10.1186/1471-2105-9-386 · Cited by 3,565 · see citing works
Gut microbiota functions: metabolism of nutrients and other food components
Rowland, I., Gibson, G., Heinken, A., Scott, K., Swann, J., Thiele, I., & Tuohy, K. (2018) · European Journal of Nutrition · doi:10.1007/s00394-017-1445-8 · Cited by 2,878 · see citing works
Bile salt biotransformations by human intestinal bacteria
Ridlon, J. M., Kang, D.-J., & Hylemon, P. B. (2006) · Journal of Lipid Research · doi:10.1194/jlr.r500013-jlr200 · Cited by 2,829 · see citing works
Sayin, S. I., Wahlström, A., Felin, J., Jäntti, S., Marschall, H.-U., Bamberg, K., Angelin, B., Hyötyläinen, T., Orešič, M., & Bäckhed, F. (2013) · Cell Metabolism · doi:10.1016/j.cmet.2013.01.003 · Cited by 2,331 · see citing works
The interaction between bacteria and bile
Begley, M., Gahan, C. G. M., & Hill, C. (2004) · FEMS Microbiology Reviews · doi:10.1016/j.femsre.2004.09.003 · Cited by 1,793 · see citing works
Endogenous Bile Acids Are Ligands for the Nuclear Receptor FXR/BAR
Wang, H., Chen, J., Hollister, K., Sowers, L. C., & Forman, B. M. (1999) · Molecular Cell · doi:10.1016/s1097-2765(00)80348-2 · Cited by 1,636 · see citing works
A G Protein-coupled Receptor Responsive to Bile Acids
Kawamata, Y., Fujii, R., Hosoya, M., Harada, M., Yoshida, H., Miwa, M., Fukusumi, S., Habata, Y., Itoh, T., Shintani, Y., et al. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m209706200 · Cited by 1,628 · see citing works
Bile acids and the gut microbiome
Ridlon, J. M., Kang, D. J., Hylemon, P. B., & Bajaj, J. S. (2014) · Current Opinion in Gastroenterology · doi:10.1097/mog.0000000000000057 · Cited by 1,329 · see citing works
Pleiotropic Roles of Bile Acids in Metabolism
de Aguiar Vallim, T. Q., Tarling, E. J., & Edwards, P. A. (2013) · Cell Metabolism · doi:10.1016/j.cmet.2013.03.013 · Cited by 1,209 · see citing works
Jones, B. V., Begley, M., Hill, C., Gahan, C. G. M., & Marchesi, J. R. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0804437105 · Cited by 1,098 · see citing works
Consequences of bile salt biotransformations by intestinal bacteria
Ridlon, J. M., Harris, S. C., Bhowmik, S., Kang, D.-J., & Hylemon, P. B. (2016) · Gut Microbes · doi:10.1080/19490976.2015.1127483 · Cited by 1,097 · see citing works
Bile acid signaling in metabolic disease and drug therapy
Li, T., & Chiang, J. Y. L. (2014) · Pharmacological Reviews · doi:10.1124/pr.113.008201 · Cited by 935 · see citing works
Bile Acids: Chemistry, Pathochemistry, Biology, Pathobiology, and Therapeutics
Hofmann, A. F., & Hagey, L. R. (2008) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-008-7568-6 · Cited by 858 · see citing works
Metabolomic Analysis and Visualization Engine for LC−MS Data
Melamud, E., Vastag, L., & Rabinowitz, J. D. (2010) · Analytical Chemistry · doi:10.1021/ac1021166 · Cited by 603 · see citing works
A metabolic pathway for bile acid dehydroxylation by the gut microbiome
Funabashi, M., Grove, T. L., Wang, M., Varma, Y., McFadden, M. E., Brown, L. C., Guo, C., Higginbottom, S., Almo, S. C., & Fischbach, M. A. (2020) · Nature · doi:10.1038/s41586-020-2396-4 · Cited by 590 · see citing works
Interaction of gut microbiota with bile acid metabolism and its influence on disease states
Staley, C. M., Weingarden, A. R., Khoruts, A., & Sadowsky, M. J. (2016) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-016-8006-6 · Cited by 582 · see citing works
Metabolism of Cholesterol and Bile Acids by the Gut Microbiota
Gérard, P. (2013) · Pathogens · doi:10.3390/pathogens3010014 · Cited by 580 · see citing works
Global chemical effects of the microbiome include new bile-acid conjugations
Quinn, R. A., Melnik, A. V., Vrbanac, A., Fu, T., Patras, K. A., Christy, M. P., Bodai, Z., Belda-Ferre, P., Tripathi, A., Chung, L. K., et al. (2020) · Nature · doi:10.1038/s41586-020-2047-9 · Cited by 579 · see citing works
LC‐MS Data Processing with MAVEN: A Metabolomic Analysis and Visualization Engine
Clasquin, M. F., Melamud, E., & Rabinowitz, J. D. (2012) · Current Protocols in Bioinformatics · doi:10.1002/0471250953.bi1411s37 · Cited by 507 · see citing works
The bile acid TGR5 membrane receptor: from basic research to clinical application
Duboc, H., Taché, Y., & Hofmann, A. F. (2014) · Digestive and Liver Disease · doi:10.1016/j.dld.2013.10.021 · Cited by 473 · see citing works
Weingarden, A. R., Chen, C., Bobr, A., Yao, D., Lu, Y., Nelson, V. M., Sadowsky, M. J., & Khoruts, A. (2014) · American Journal of Physiology-Gastrointestinal and Liver Physiology · doi:10.1152/ajpgi.00282.2013 · Cited by 423 · see citing works
Hofmann, A. F., & Hagey, L. R. (2014) · Journal of Lipid Research · doi:10.1194/jlr.r049437 · Cited by 359 · see citing works
Heinken, A., Ravcheev, D. A., Baldini, F., Heirendt, L., Fleming, R. M. T., & Thiele, I. (2019) · Microbiome · doi:10.1186/s40168-019-0689-3 · Cited by 335 · see citing works
Significance of bile salt hydrolytic activities of lactobacilli
Smet, I. D., Hoorde, L. V., Woestyne, M. V., Christiaens, H., & Verstraete, W. (1995) · Journal of Applied Bacteriology · doi:10.1111/j.1365-2672.1995.tb03140.x · Cited by 307 · see citing works
Bile acids are nutrient signaling hormones
Zhou, H., & Hylemon, P. B. (2014) · Steroids · doi:10.1016/j.steroids.2014.04.016 · Cited by 285 · see citing works
The human gut sterolbiome: bile acid-microbiome endocrine aspects and therapeutics
Ridlon, J. M., & Bajaj, J. S. (2015) · Acta Pharmaceutica Sinica B · doi:10.1016/j.apsb.2015.01.006 · Cited by 210 · see citing works
Wang, D. Q. ‐., Tazuma, S., Cohen, D. E., & Carey, M. C. (2003) · American Journal of Physiology-Gastrointestinal and Liver Physiology · doi:10.1152/ajpgi.00156.2003 · Cited by 210 · see citing works
Northfield, T. C., & McColl, I. (1973) · Gut · doi:10.1136/gut.14.7.513 · Cited by 207 · see citing works
Microbial bile acid transformation
Midtvedt, T. (1974) · American Journal of Clinical Nutrition · doi:10.1093/ajcn/27.11.1341 · Cited by 195 · see citing works
Lee, J., Arai, H., Nakamura, Y., Fukiya, S., Wada, M., & Yokota, A. (2013) · Journal of Lipid Research · doi:10.1194/jlr.m039834 · Cited by 169 · see citing works
7alpha-Dehydroxylation of cholic acid and chenodeoxycholic acid by Clostridium leptum.
Stellwag, E. J., & Hylemon, P. B. (1979) · Journal of Lipid Research · doi:10.1016/s0022-2275(20)40615-7 · Cited by 161 · see citing works
Diversity of Bacteria Exhibiting Bile Acid-inducible 7α-dehydroxylation Genes in the Human Gut
Vital, M., Rud, T., Rath, S., Pieper, D. H., & Schlüter, D. (2019) · Computational and Structural Biotechnology Journal · doi:10.1016/j.csbj.2019.07.012 · Cited by 149 · see citing works
Kitahara, M., Takamine, F., Imamura, T., & Benno, Y. (2000) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/00207713-50-3-971 · Cited by 146 · see citing works
Purification and characterization of bile salt hydrolase from Bacteroides fragilis subsp. fragilis
Stellwag, E. J., & Hylemon, P. B. (1976) · Biochimica et Biophysica Acta (BBA) - Enzymology · doi:10.1016/0005-2744(76)90068-1 · Cited by 145 · see citing works
Ridlon, J. M., Kang, D.-J., & Hylemon, P. B. (2009) · Anaerobe · doi:10.1016/j.anaerobe.2009.05.004 · Cited by 138 · see citing works
Hydroxysteroid dehydrogenases (HSDs) in bacteria – A bioinformatic perspective
Kisiela, M., Skarka, A., Ebert, B., & Maser, E. (2011) · The Journal of Steroid Biochemistry and Molecular Biology · doi:10.1016/j.jsbmb.2011.08.002 · Cited by 138 · see citing works
In vitro and in vivo characterization of Clostridium scindens bile acid transformations
Marion, S., Studer, N., Desharnais, L., Menin, L., Escrig, S., Meibom, A., Hapfelmeier, S., & Bernier‐Latmani, R. (2018) · Gut Microbes · doi:10.1080/19490976.2018.1549420 · Cited by 136 · see citing works
Doden, H. L., Sallam, L., Devendran, S., Ly, L. K., Doden, G., Daniel, S. L., Alves, J. M. P., & Ridlon, J. M. (2018) · Applied and Environmental Microbiology · doi:10.1128/aem.00235-18 · Cited by 120 · see citing works
Wegner, K., Just, S., Gau, L., Henrike, M., Gérard, P., Lepage, P., Clavel, T., & Rohn, S. (2016) · Analytical and Bioanalytical Chemistry · doi:10.1007/s00216-016-0048-1 · Cited by 119 · see citing works
Purification and characterization of bile salt hydrolase from Clostridium perfringens.
Gopal-Srivastava, R., & Hylemon, P. B. (1988) · Journal of Lipid Research · doi:10.1016/s0022-2275(20)38464-9 · Cited by 117 · see citing works
Side chain conjugation prevents bacterial 7-dehydroxylation of bile acids.
Batta, A. K., Salen, G., Arora, R., Shefer, S., Batta, M., & Person, A. (1990) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)38535-7 · Cited by 116 · see citing works
Fukiya, S., 荒田美紀, Kawashima, H., Yoshida, D., Kaneko, M. A. N., Minamida, K., Watanabe, J., Ogura, Y., Uchida, K., Itoh, K., et al. (2009) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.2009.01531.x · Cited by 111 · see citing works
Doerner, K. C., Takamine, F., Lavoie, C. P., Mallonee, D. H., & Hylemon, P. B. (1997) · Applied and Environmental Microbiology · doi:10.1128/aem.63.3.1185-1188.1997 · Cited by 105 · see citing works
Yoshimoto, T., Higashi, H., Kanatani, A., et al. (1991) · Journal of Bacteriology · doi:10.1128/jb.173.7.2173-2179.1991 · Cited by 103 · see citing works
Deconjugation of bile acids by human intestinal bacteria implanted in germ‐free rats
Chikai, T., Nakao, H., & Uchida, K. (1987) · Lipids · doi:10.1007/bf02533948 · Cited by 101 · see citing works
Deoxycholic acid formation in gnotobiotic mice associated with human intestinal bacteria
Narushima, S., Itoh, K., Miyamoto, Y., Park, S., Nagata, K., Kuruma, K., & Uchida, K. (2006) · Lipids · doi:10.1007/s11745-006-5038-1 · Cited by 101 · see citing works
Bile acids and colon cancer: Is FXR the solution of the conundrum?
Gadaleta, R. M., García‐Irigoyen, O., & Moschetta, A. (2017) · Molecular Aspects of Medicine · doi:10.1016/j.mam.2017.04.002 · Cited by 99 · see citing works
Wells, J. E., Berr, F., Thomas, L. A., Dowling, R. H., & Hylemon, P. B. (2000) · Journal of Hepatology · doi:10.1016/s0168-8278(00)80183-x · Cited by 90 · see citing works
Liu, L., Aigner, A., & Schmid, R. D. (2010) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-010-3052-y · Cited by 82 · see citing works
Intestinal absorption, excretion, and biotransformation of hyodeoxycholic acid in man.
SACQUET, E., Parquet, M., Riottot, M., et al. (1983) · Journal of Lipid Research · doi:10.1016/s0022-2275(20)37965-7 · Cited by 70 · see citing works
7α-hydroxysteroid dehydrogenase from Escherichia coli B: Preliminary studies
Macdonald, I. A., Williams, C. N., & Mahony, D. E. (1973) · Biochimica et Biophysica Acta (BBA) - Enzymology · doi:10.1016/0005-2744(73)90022-3 · Cited by 69 · see citing works
Huijghebaert, S., & Hofmann, A. F. (1988) · Journal of Lipid Research · doi:10.1016/s0022-2275(20)38791-5 · Cited by 65 · see citing works
Prevention of cholesterol-induced gallstones by hyodeoxycholic acid in the prairie dog.
Singhal, A. K., Cohen, B. I., Mosbach, E. H., et al. (1984) · Journal of Lipid Research · doi:10.1016/s0022-2275(20)37766-x · Cited by 48 · see citing works
Doden, H. L., Pollet, R. M., Mythen, S. M., Wawrzak, Z., Devendran, S., Cann, I., Koropatkin, N. M., & Ridlon, J. M. (2019) · Journal of Biological Chemistry · doi:10.1074/jbc.ra119.009390 · Cited by 42 · see citing works
Genetic Diversity of Bile Salt Hydrolases Among Human Intestinal Bifidobacteria
Jarocki, P., & Targoński, Z. (2013) · Current Microbiology · doi:10.1007/s00284-013-0362-1 · Cited by 38 · see citing works
Liang, L., Yi, Y., Lv, Y., Qian, J., Lei, X., & Zhang, G. (2018) · Molecules · doi:10.3390/molecules23051157 · Cited by 38 · see citing works
Isoursodeoxycholic acid: metabolism and therapeutic effects in primary biliary cirrhosis
Marschall, H., Broomé, U., Einarsson, C., Alvélius, G., Thomas, H. G., & Matern, S. (2001) · Journal of Lipid Research · doi:10.1016/s0022-2275(20)31635-7 · Cited by 37 · see citing works
Edenharder, R., Pfützner, A., & Hammann, R. (1989) · Biochimica et Biophysica Acta (BBA) - Lipids and Lipid Metabolism · doi:10.1016/0005-2760(89)90272-5 · Cited by 31 · see citing works
Dehydroxylation of cholic acid at C12 and epimerization at C5 and C7 by Bacteroides species
Edenharder, R. (1984) · Journal of Steroid Biochemistry · doi:10.1016/0022-4731(84)90304-2 · Cited by 29 · see citing works
Hayakawa, S., Kanematsu, Y., & Fujiwara, T. (1969) · Biochemical Journal · doi:10.1042/bj1150249 · Cited by 27 · see citing works
Rodríguez-Castaño, G. P., Rey, F. E., Caro‐Quintero, A., & Acosta‐González, A. (2020) · PLoS ONE · doi:10.1371/journal.pone.0227724 · Cited by 23 · see citing works
Self-citationKinetic properties of 7α-hydroxysteroid dehydrogenase from Escherichia coli 080
Prabha, V., Gupta, M., & Gupta, K. G. (1989) · Canadian Journal of Microbiology · doi:10.1139/m89-180 · Cited by 18 · see citing works
Intestinal Microflora and Bile Acids
Morotomi, M., Kawai, Y., & Mutai, M. (1979) · Microbiology and Immunology · doi:10.1111/j.1348-0421.1979.tb02817.x · Cited by 15 · see citing works
Liver Cancer Checks in When Bile Acid Clocks Out
Fu, T., Zhao, X., & Evans, R. M. (2016) · Cancer Cell · doi:10.1016/j.ccell.2016.11.012 · Cited by 12 · see citing works
The Integrated Microbial Genome Resource of Analysis
Checcucci, A., & Mengoni, A. (2014) · Methods in molecular biology · doi:10.1007/978-1-4939-1720-4_18 · Cited by 7 · see citing works
Chassaing, B., & Gewirtz, A. T. (2018) · Elsevier eBooks · doi:10.1016/b978-0-12-809954-4.00035-9 · Cited by 4 · see citing works
Edenharder, R., Stubenrauch, S., & Slemrova, J. (1976) · PubMed · Cited by 2 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Bile acids and the gut microbiota: metabolic interactions and impacts on disease
Collins, S. L., Stine, J. G., Bisanz, J. E., Okafor, C. D., & Patterson, A. D. (2023) · Nature Reviews Microbiology · doi:10.1038/s41579-022-00805-x · Cited by 1,214 · see citing works
Profiling the human intestinal environment under physiological conditions
Shalon, D., Culver, R. N., Grembi, J. A., Folz, J., Treit, P. V., Shi, H., Rosenberger, F. A., Dethlefsen, L., Meng, X., Yaffe, E., et al. (2023) · Nature · doi:10.1038/s41586-023-05989-7 · Cited by 484 · see citing works
Bile Acids Are Substrates for Amine N-Acyl Transferase Activity by Bile Salt Hydrolase
Patterson, A., Rimal, B., Collins, S., Granda, M., Koo, I., Solanka, S., Hoque, N., Gentry, E., Yan, T., Bisanz, J., et al. (2022) · doi:10.21203/rs.3.rs-2050120/v1 · Cited by 245 · see citing works
Dorrestein, P., Gentry, E., Collins, S., Panitchpakdi, M., Belda-Ferre, P., Stewart, A., Wang, M., Jarmusch, A., Avila-Pacheco, J., Plichta, D., et al. (2021) · doi:10.21203/rs.3.rs-820302/v1 · Cited by 197 · see citing works
Foley, M. H., Walker, M. E., Stewart, A. K., O’Flaherty, S., Gentry, E. C., Patel, S., Beaty, V. V., Allen, G., Pan, M., Simpson, J. B., et al. (2023) · Nature Microbiology · doi:10.1038/s41564-023-01337-7 · Cited by 181 · see citing works
Bile salt hydrolase/aminoacyltransferase shapes the microbiome
Guzior, D., Okros, M., Hernandez, C. M., Shivel, M., Armwald, B., Hausinger, R., & Quinn, R. (2022) · doi:10.21203/rs.3.rs-2050406/v1 · Cited by 187 · see citing works
Human metabolome variation along the upper intestinal tract
Folz, J., Culver, R. N., Morales, J. M., Grembi, J., Triadafilopoulos, G., Relman, D. A., Huang, K. C., Shalon, D., & Fiehn, O. (2023) · Nature Metabolism · doi:10.1038/s42255-023-00777-z · Cited by 143 · see citing works
How bile acids and the microbiota interact to shape host immunity
Lee, M. H., Nuccio, S.-P., Mohanty, I., Hagey, L. R., Dorrestein, P. C., Chu, H., & Raffatellu, M. (2024) · Nature Reviews Immunology · doi:10.1038/s41577-024-01057-x · Cited by 143 · see citing works
Agolino, G., Pino, A., Vaccalluzzo, A., Cristofolini, M., Solieri, L., Caggia, C., & Randazzo, C. L. (2024) · Journal of Functional Foods · doi:10.1016/j.jff.2024.106357 · Cited by 87 · see citing works
Kalecký, K., & Bottiglieri, T. (2023) · npj Parkinson's Disease · doi:10.1038/s41531-023-00531-y · Cited by 32 · see citing works
- Authors
- Lucas, L. N., Barrett, K., Kerby, R. L., Zhang, Q., Cattaneo, L. E., Stevenson, D., Rey, F. E., & Amador-Noguez, D.
- Affiliations
- University of Wisconsin–Madison (US)
- Department of Bacteriology, University of Wisconsin—Madison, Madison, Wisconsin, USA
- Corresponding author
- Rey, F. E.
- Venue
- mSystems
- Publisher
- American Society for Microbiology
- Published
- 2021-08-31
- Volume
- 6
- Issue
- 4
- Pages
- 101128msystems0080521-101128msystems0080521
- ISSN
- 2379-5077 (ISSN-L)
- PMC
- PMC12338150
- OpenAlex
- W3198649369
- Cited by
- 168
- References
- 70
- Citations by year
- 2026: 29 · 2025: 39 · 2024: 40 · 2023: 33 · 2022: 25 · 2021: 2
- FWCI
- 7.84
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- mSystems (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion)
- Funders
- HHS | National Institutes of Health (DK108259)
- HHS | NIH | National Institute of General Medical Sciences (T32GM008349, T32GM135066)
- National Science Foundation (1715710)
- University of Wisconsin-Madison (SciMed Grauate Research Scholars Fellowship)
- Fondation Leducq (Transatlantic Networks of Excellence Award)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Health Sciences › Medicine › Oncology › Drug Transport and Resistance Mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Steroid Chemistry and Biochemistry
- Keywords
- bile acid conjugation, human gut microbiome, gut microbiota, metabolic disorders, digestive tract cancer, microbiome
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review