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Biallelic VPS35L pathogenic variants cause 3C/Ritscher-Schinzel-like syndrome through dysfunction of retriever complex
Abstract
Background: 3C/Ritscher-Schinzel syndrome is characterised by congenital cranio-cerebello-cardiac dysplasia, where CCDC22 and WASHC5 are accepted as the causative genes. In combination with the retromer or retriever complex, these genes play a role in endosomal membrane protein recycling. We aimed to identify the gene abnormality responsible for the pathogenicity in siblings with a 3C/Ritscher-Schinzel-like syndrome, displaying cranio-cerebello-cardiac dysplasia, coloboma, microphthalmia, chondrodysplasia punctata and complicated skeletal malformation. Methods: Exome sequencing was performed to identify pathogenic variants. Cellular biological analyses and generation of knockout mice were carried out to elucidate the gene function and pathophysiological significance of the identified variants. Results: We identified compound heterozygous pathogenic variants (c.1097dup; p.Cys366Trpfs*28 and c.2755G>A; p.Ala919Thr) in the VPS35L gene, which encodes a core protein of the retriever complex. The identified missense variant lacked the ability to form the retriever complex, and the frameshift variant induced non-sense-mediated mRNA decay, thereby confirming biallelic loss of function of VPS35L. In addition, VPS35L knockout cells showed decreased autophagic function in nutrient-rich and starvation conditions, as well as following treatment with Torin 1. We also generated Vps35l−/− mice and demonstrated that they were embryonic lethal at an early stage, between E7.5 and E10.5. Conclusions: Our results suggest that biallelic loss-of-function variants in VPS35L underlies 3C/Ritscher-Schinzel-like syndrome. Furthermore, VPS35L is necessary for autophagic function and essential for early embryonic development. The data presented here provide a new insight into the critical role of the retriever complex in fetal development.
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Mutations in subunits of the SNX17-Retriever-CCC-WASH recycling pathway are involved in human pathologies primarily affecting the nervous system.
“Importantly, a growing body of evidence indicates that mutations in subunits of the SNX17-Retriever-CCC-WASH recycling pathway are involved in human pathologies primarily affecting the nervous system.”
From Recruitment of the SNX17-Retriever recycling pathway regulates synaptic function and plasticity (2023) · cites this paper as Kato et al., 2020
Mutations associated with Ritscher-Schinzel syndrome cause a decrease in the levels of Retriever subunits or CCC subunits, which interferes with the normal function of these complexes.
“several mutations associated with Ritscher-Schinzel syndrome cause a decrease in the levels of Retriever subunits (Otsuji et al., 2022; Kato et al., 2020) or CCC subunits (Starokadomskyy et al., 2013), which interferes with the normal function of these complexes.”
From Recruitment of the SNX17-Retriever recycling pathway regulates synaptic function and plasticity (2023) · cites this paper as Kato et al., 2020
Mutations in Commander subunits are causative for X-linked intellectual disability (XLID) and Ritscher-Schinzel syndrome (RSS).
“mutations in its subunits are causative for X-linked intellectual disability (XLID) and Ritscher-Schinzel syndrome (RSS), a multi-system developmental disorder characterised by abnormal craniofacial features, cerebellar hypoplasia, and stunted cardiovascular development.7,8,9,10,11,12,13,14”
From Structure of the endosomal Commander complex linked to Ritscher-Schinzel syndrome (2023) · cites this paper as [8]
Mutations in Commander lead to hypercholesterolemia through reduced trafficking of LDLRs.
“Mutations in Commander lead to hypercholesterolemia through reduced trafficking of LDLRs.7,8,9,10,12,13,14”
From Structure of the endosomal Commander complex linked to Ritscher-Schinzel syndrome (2023) · cites this paper as [8]
This clustering provides insight into the destabilization of protein expression observed in patients harboring these mutations.
“providing insight into the destabilization of protein expression observed in patients harboring these mutations.8,9,11,12”
From Structure of the endosomal Commander complex linked to Ritscher-Schinzel syndrome (2023) · cites this paper as [8]
Mapping mutations causative for XLID and RSS onto the Commander model reveals clustering of VPS35L and CCDC22 pathogenic mutations around the interface between Retriever and CCC complexes.
“Finally, we mapped mutations causative for XLID and RSS7,8,9,10,11,12 onto the Commander model (Figure 7A). This reveals clustering of VPS35L and CCDC22 pathogenic mutations around the interface between Retriever and CCC complexes”
From Structure of the endosomal Commander complex linked to Ritscher-Schinzel syndrome (2023) · cites this paper as [8]
The structure of the Commander complex has allowed us to map the locations of causative mutations for XLID and RSS.
“The structure of the Commander complex has allowed us to map the locations of causative mutations for XLID and RSS.7,8,9,10,11,12,13,14”
From Structure of the endosomal Commander complex linked to Ritscher-Schinzel syndrome (2023) · cites this paper as [8]
Mutations in WASHC5, CCDC22, and VPS35L result in 3C/Ritscher-Schinzel syndrome.
“Over the past decade, mutations in additional genes, CCDC22 and VPS35L, that also result in 3 C/Ritscher-Schinzel syndrome have been reported [3–7].”
From CCDC22 mutations that impair COMMD binding cause attenuated 3C/Ritscher-Schinzel syndrome (2025) · cites this paper as [5]
Mutations in WASHC5, CCDC22 and VPS35L all result in hypercholesterolemia in humans, thought to be due to abnormal LDL clearance secondary to defects in LDL receptor recycling.
“It is worth noting that mutations in WASHC5, CCDC22 and VPS35L all result in hypercholesterolemia in humans thought to be due to abnormal LDL clearance secondary to defects in LDL receptor recycling, a phenotype also seen in mouse models of liver deficiency of Ccdc22, Vps35l and Commd1 [5, 7, 30–32].”
From CCDC22 mutations that impair COMMD binding cause attenuated 3C/Ritscher-Schinzel syndrome (2025) · cites this paper as [5]
The SNX17-Retriever-CCC-WASH sorting pathway controls the sorting and recycling of numerous cell surface proteins, including ITGB1 and LRP1.
“The SNX17-Retriever-CCC-WASH sorting pathway controls the sorting and recycling of numerous cell surface proteins, including integrins, such as integrin β1 (ITGB1), and low-density lipoprotein receptor-related protein 1 (LRP1).”
From Clinical diversity and molecular mechanism of VPS35L-associated Ritscher-Schinzel syndrome (2023) · cites this paper as [5]
Depletion of genes in the SNX17-Retriever-CCC-WASH sorting and recycling pathway leads to a decrease in expression of cell surface proteins such as ITGB1 and LRP1.
“As such, depletion of genes in this sorting and recycling pathway leads to a decrease in the expression of these cell surface proteins.”
From Clinical diversity and molecular mechanism of VPS35L-associated Ritscher-Schinzel syndrome (2023) · cites this paper as [5]
The previously reported siblings with VPS35L variants comprised an elder girl who died in the infantile period due to sudden cardiac arrest, and a younger boy who presented a variety of severe complications.
“The previously reported siblings with VPS35L variants comprised an elder girl who died in the infantile period due to sudden cardiac arrest, and a younger boy who presented a variety of severe complications.5”
From Clinical diversity and molecular mechanism of VPS35L-associated Ritscher-Schinzel syndrome (2023) · cites this paper as [5]
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Structure of the endosomal Commander complex linked to Ritscher-Schinzel syndrome
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Self-citationStructural organization of the retriever–CCC endosomal recycling complex
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Receptor Recycling by Retromer
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Self-citationCCDC22 mutations that impair COMMD binding cause attenuated 3C/Ritscher-Schinzel syndrome
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Metadata
- Authors
- Kato, K., Oka, Y., Muramatsu, H., Vasilev, F. F., Otomo, T., Oishi, H., Kawano, Y., Kidokoro, H., Nakazawa, Y., Ogi, T., Takahashi, Y., & Saitoh, S.
- Affiliations
- Department of Pediatrics and Neonatology, Nagoya City University Graduate School of Medical Sciences and Medical School, Nagoya, Aichi, Japan
- Department of Human Genetics and Molecular Genetics, Nagoya University, Nagoya, Aichi, Japan
- Department of Pediatrics, Nagoya University Graduate School of Medicine Faculty of Medicine, Nagoya, Aichi, Japan
- Department of Pathophysiology and Metabolism, Kawasaki Medical School, Kurashiki, Okayama, Japan
- Department of Comparative and Experimental Medicine, Nagoya City University Graduate School of Medical Sciences and Medical School, Nagoya, Aichi, Japan
- Department of Pediatrics, Toyota Memorial Hospital, Toyota, Aichi, Japan
- ORCID
- Kato, Kohji
- Venue
- Journal of Medical Genetics
- Publisher
- BMJ
- Published
- 2019-11-11
- Volume
- 57
- Issue
- 4
- Pages
- 245-253
- ISSN
- 0022-2593
- 1468-6244
- Cited by
- 42
- References
- 6
- Language
- en
- Funders
- Japan Agency for Medical Research and Development (Grant Number JP17kk0205002 (SS))
- Japan Society for the Promotion of Science (KAKENHI / Grant Number JP17H05088(TO), KAKENHI / Grant Number JP16K15530 (SS))
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