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A global analysis of SNX27-retromer assembly and cargo specificity reveals a function in glucose and metal ion transport

Steinberg, Florian, Gallon, Matthew, Winfield, Mark, Thomas, Elaine C., Bell, Amanda J., Heesom, Kate J., Tavaré, Jeremy M., Cullen, Peter J.·2013·Nature Cell Biology

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Crossref · 10.1038/ncb2721

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  • Through this dual interaction SNX27 regulates the retrieval and recycling of hundreds of cargoes to the plasma membrane.

    “Through this dual interaction SNX27 regulates the retrieval and recycling of hundreds of cargoes to the plasma membrane [26,29,31,58,59].”

    From Global identification of neuronal and astrocytic integral membrane proteins that require Retromer for their endosomal recycling (2026) · cites this paper as [29]

    The Discussion describes two independent SNX27 interactions involved in cargo retrieval and recycling toward the plasma membrane. But the Results report 122 proteins reduced at the surface after SNX27 depletion, with 81 also affected by retromer depletion; this does not support the claim that SNX27 regulates hundreds of cargoes. Page numbers are not available in our copy. (LLM, conf=0.88)

    Experimental — accuracy not yet measured
  • Through its FERM domain, SNX27 may associate with cargoes containing a NPxY or NxxY sorting motif, with a preference for sequences phosphorylated at the tyrosine residue.

    “Through its FERM domain, SNX27 may also associate with cargoes containing a NPxY or NxxY sorting motif (x refers to any residue), with SNX27 showing a preference for sequences that are phosphorylated at the tyrosine residue [29,60,61].”

    From Global identification of neuronal and astrocytic integral membrane proteins that require Retromer for their endosomal recycling (2026) · cites this paper as [29]

    The Discussion (page unavailable) says SNX27’s FERM-like domain can engage NPxY–NxxY sorting motifs and suggests that it may bind cargo through those motifs. It does not state that SNX27 prefers motifs phosphorylated at the tyrosine residue; searches for phosphorylated tyrosine and phosphotyrosine did not find that preference in our copy. (LLM, conf=0.86)

    Experimental — accuracy not yet measured
  • The difference between the time scales of retromer knocksideways and the appearance of the GLUT1 missorting phenotype is consistent with the known rate of GLUT1 lysosomal-mediated degradation upon retromer suppression and reflects the relatively slow rate of endocytosis of this transporter.

    “The difference between the time scales of retromer knocksideways (Fig. 1C–E) compared with the appearance of the GLUT1 missorting phenotype is entirely consistent with the known rate of GLUT1 lysosomal-mediated degradation observed upon retromer suppression and reflects the relatively slow rate of endocytosis of this transporter (Steinberg et al., 2013).”

    From Acute inactivation of retromer and ESCPE-1 leads to time-resolved defects in endosomal cargo sorting (2020) · cites this paper as Steinberg et al., 2013

    Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.

    Experimental — accuracy not yet measured
  • Endosomal retrieval and recycling is orchestrated through a specialised endosomal nanodomain, the retrieval sub-domain.

    “and is orchestrated through a specialised endosomal nanodomain, the retrieval sub-domain”

    From Mapping of endosomal proximity proteomes reveals Retromer as a hub for RAB GTPase regulation (2025) · cites this paper as [10]

    The Discussion describes a possible rescue-recycling subdomain of an early endosome, supporting the subdomain concept. But it explicitly presents this as a proposed model and says the study does not address how cargo is kept out of the lysosomal pathway; it does not establish that retrieval and recycling are orchestrated through such a domain. (LLM, conf=0.88)

    Experimental — accuracy not yet measured
  • SNX27 regulates cargo recycling by engaging with the Retromer complex, a SNX-BAR dimer, and the WASH complex.

    “SNX27 regulates cargo recycling by engaging with the Retromer complex (VPS35, VPS26A/B, and VPS29), a SNX–Bin/Amphiphysin/Rvs (BAR) dimer (SNX1/2 in complex with SNX5/6), and the WASH complex”

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Citations

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Research works printed but not linked: 31

  1. Cullen, P. J. Endosomal sorting and signalling: an emerging role for sorting nexins. Nat. Rev. Mol. Cell Biol. 9, 574–582 (2008). · DOI · Paper page
  2. Steinberg, F., Heesom, K. J., Bass, M. D. & Cullen, P. J. SNX17 protects integrins from degradation by sorting between lysosomal and recycling pathways. J. Cell Biol. 197, 219–230 (2012). · DOI · Paper page
  3. Bottcher, R. T. et al. Sorting nexin 17 prevents lysosomal degradation of β1integrins by binding to the β1-integrin tail. Nat. Cell Biol. 14, 584–592 (2012). · DOI · Paper page
  4. Lauffer, B. E. et al. SNX27 mediates PDZ-directed sorting from endosomes to the plasma membrane. J. Cell Biol. 190, 565–574 (2010). · DOI · Paper page
  5. Temkin, P. et al. SNX27 mediates retromer tubule entry and endosome-to-plasma membrane trafficking of signalling receptors. Nat. Cell Biol. 13, 715–721 (2011). · DOI · Paper page
  6. Arighi, C. N., Hartnell, L. M., Aguilar, R. C., Haft, C. R. & Bonifacino, J. S. Role of the mammalian retromer in sorting of the cation-independent mannose 6-phosphate receptor. J. Cell Biol. 165, 123–133 (2004). · DOI · Paper page
  7. Carlton, J. et al. Sorting nexin-1 mediates tubular endosome-to-TGN transport through coincidence sensing of high- curvature membranes and 3-phosphoinositides. Curr. Biol. 14, 1791–1800 (2004). · DOI · Paper page
  8. Seaman, M. N. Cargo-selective endosomal sorting for retrieval to the Golgi requires retromer. J. Cell Biol. 165, 111–122 (2004). · DOI · Paper page
  9. Wassmer, T. et al. A loss-of-function screen reveals SNX5 and SNX6 as potential components of the mammalian retromer. J. Cell Sci. 120, 45–54 (2007). · DOI · Paper page
  10. Wassmer, T. et al. The retromer coat complex coordinates endosomal sorting and dynein-mediated transport, with carrier recognition by the trans-Golgi network. Dev. Cell 17, 110–122 (2009). · DOI
  11. Trinkle-Mulcahy, L. et al. Identifying specific protein interaction partners using quantitative mass spectrometry and bead proteomes. J. Cell Biol. 183, 223–239 (2008). · DOI
  12. Rincon, E. et al. Proteomics identification of sorting nexin 27 as a diacylglycerol kinase zeta-associated protein: new diacylglycerol kinase roles in endocytic recycling. Mol. Cell Proteomics 6, 1073–1087 (2007). · DOI
  13. Valdes, J. L. et al. Sorting nexin 27 protein regulates trafficking of a p21-activated kinase (PAK) interacting exchange factor (β-Pix)-G protein-coupled receptor kinase interacting protein (GIT) complex via a PDZ domain interaction. J. Biol. Chem. 286, 39403–39416 (2011). · DOI
  14. Balana, B. et al. Mechanism underlying selective regulation of G protein-gated inwardly rectifying potassium channels by the psychostimulant-sensitive sorting nexin 27. Proc. Natl Acad. Sci. USA 108, 5831–5836 (2011). · DOI · Paper page
  15. Setty, S. R. et al. Cell-specific ATP7A transport sustains copper-dependent tyrosinase activity in melanosomes. Nature 454, 1142–1146 (2008). · DOI
  16. Zhao, F. Q. & Keating, A. F. Functional properties and genomics of glucose transporters. Curr. Genom. 8, 113–128 (2007). · DOI
  17. Traer, C. J. et al. SNX4 coordinates endosomal sorting of TfnR with dynein-mediated transport into the endocytic recycling compartment. Nat. Cell Biol. 9, 1370–1380 (2007). · DOI · Paper page
  18. Ghai, R. et al. Phox homology band 4.1/ezrin/radixin/moesin-like proteins function as molecular scaffolds that interact with cargo receptors and Ras GTPases. Proc. Natl Acad. Sci. USA 108, 7763–7768 (2011). · DOI · Paper page
  19. Harbour, M. E., Breusegem, S. Y. & Seaman, M. N. Recruitment of the endosomal WASH complex is mediated by the extended ’tail’ of Fam21 binding to the retromer protein Vps35. Biochem. J. 442, 209–220 (2012). · DOI · Paper page
  20. Jia, D., Gomez, T. S., Billadeau, D. D. & Rosen, M. K. Multiple repeat elements within the FAM21 tail link the WASH actin regulatory complex to the retromer. Mol. Biol. Cell 23, 2352–2361 (2012). · DOI · Paper page
  21. Harbour, M. E. et al. The cargo-selective retromer complex is a recruiting hub for protein complexes that regulate endosomal tubule dynamics. J. Cell Sci. 123, 3703–3717 (2010). · DOI · Paper page
  22. Shi, H., Rojas, R., Bonifacino, J. S. & Hurley, J. H. The retromer subunit Vps26 has an arrestin fold and binds Vps35 through its C-terminal domain. Nat. Struct. Mol. Biol. 13, 540–548 (2006). · DOI
  23. Hayashi, H. et al. Sorting nexin 27 interacts with multidrug resistance-associated protein 4 (MRP4) and mediates internalization of MRP4. J. Biol. Chem. 287, 15054–15065 (2012). · DOI
  24. Seaman, M. N., Harbour, M. E., Tattersall, D., Read, E. & Bright, N. Membrane recruitment of the cargo-selective retromer subcomplex is catalysed by the small GTPase Rab7 and inhibited by the Rab-GAP TBC1D5. J. Cell Sci. 122, 2371–2382 (2009). · DOI · Paper page
  25. Elkins, J. M. et al. Structure of PICK1 and other PDZ domains obtained with the help of self-binding C-terminal extensions. Protein Sci. 16, 683–694 (2007). · DOI
  26. Bunn, R. C., Jensen, M. A. & Reed, B. C. Protein interactions with the glucose transporter binding protein GLUT1CBP that provide a link between GLUT1 and the cytoskeleton. Mol. Biol. Cell 10, 819–832 (1999). · DOI
  27. Wieman, H. L. et al. An essential role for the Glut1 PDZ-binding motif in growth factor regulation of Glut1 degradation and trafficking. Biochem. J. 418, 345–367 (2009). · DOI
  28. Puthenveedu, M. A. et al. Sequence-dependent sorting of recycling proteins by actin-stabilized endosomal microdomains. Cell 143, 761–773 (2010). · DOI · Paper page
  29. Gomez, T. S., Gorman, J. A., Artal-Martinez de Narvajas, A., Koenig, A. O. & Billadeau, D. D. Trafficking defects in WASH-knockout fibroblasts originate from collapsed endosomal and lysosomal networks. Mol. Biol. Cell 23, 3215–3228 (2012). · DOI · Paper page
  30. Ghai, R. et al. Structural basis for endosomal trafficking of diverse transmembrane cargos by PX-FERM proteins. Proc. Natl Acad. Sci. USA 19, E643-52 (2013).
  31. Zech, T. et al. The Arp2/3 activator WASH regulates α5β1-integrin-mediated invasive migration. J. Cell Sci. 124, 3753–3759 (2011). · DOI · Paper page

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Metadata

Authors
Steinberg, F., Gallon, M., Winfield, M., Thomas, E. C., Bell, A. J., Heesom, K. J., Tavaré, J. M., & Cullen, P. J.
Venue
Nature Cell Biology
Published
2013-04-07
Volume
15
Issue
5
Pages
461-471
ISSN
  • 1465-7392
  • 1476-4679
Cited by
524
References
1
Language
en

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