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Cited by 110Genomics and Phylogenetic StudiesChromosomal and Genetic VariationsGenomic variations and chromosomal abnormalities

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New Approaches for Genome Assembly and Scaffolding

Rice, Edward S., Green, Richard E.·2019·Annual Review of Animal Biosciences
DOI 10.1146/annurev-animal-020518-115344
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Abstract

Affordable, high-throughput DNA sequencing has accelerated the pace of genome assembly over the past decade. Genome assemblies from high-throughput, short-read sequencing, however, are often not as contiguous as the first generation of genome assemblies. Whereas early genome assembly projects were often aided by clone maps or other mapping data, many current assembly projects forego these scaffolding data and only assemble genomes into smaller segments. Recently, new technologies have been invented that allow chromosome-scale assembly at a lower cost and faster speed than traditional methods. Here, we give an overview of the problem of chromosome-scale assembly and traditional methods for tackling this problem. We then review new technologies for chromosome-scale assembly and recent genome projects that used these technologies to create highly contiguous genome assemblies at low cost.

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Metadata

Authors
Rice, E. S., & Green, R. E.
Affiliations
University of California, Santa Cruz (US)
ORCID
Venue
Annual Review of Animal Biosciences
Publisher
Annual Reviews
Published
2019-02-15
Volume
7
Issue
1
Pages
17-40
ISSN
  • 2165-8102 (ISSN-L)
  • 2165-8110
DOI
10.1146/annurev-animal-020518-115344
OpenAlex
W2903541438
Cited by
110
References
13
Citations by year
2026: 6 · 2025: 11 · 2024: 18 · 2023: 13 · 2022: 21 · 2021: 18 · 2020: 18 · 2019: 4
FWCI
0.98
Type
journal article
Language
en
Open access
closed
Locations
  • Annual Review of Animal Biosciences (publishedVersion)
  • PubMed (publishedVersion)
Funders
National Human Genome Research Institute (U24HG009084)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Chromosomal and Genetic Variations
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genomic variations and chromosomal abnormalities
Keywords
genome assembly, genome scaffolding, chromosome-level genome assembly, short-read sequencing, genome contiguity, assembly technology, genome projects
MeSH terms
Animals, Chromosome Mapping, Genome, Sequence Analysis, DNA, Genomics, High-Throughput Nucleotide Sequencing

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