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Tethering: Fragment-Based Drug Discovery
Abstract
▪ Abstract The genomics revolution has provided a deluge of new targets for drug discovery. To facilitate the drug discovery process, many researchers are turning to fragment-based approaches to find lead molecules more efficiently. One such method, Tethering 1 , allows for the identification of small-molecule fragments that bind to specific regions of a protein target. These fragments can then be elaborated, combined with other molecules, or combined with one another to provide high-affinity drug leads. In this review we describe the background and theory behind Tethering and discuss its use in identifying novel inhibitors for protein targets including interleukin-2 (IL-2), thymidylate synthase (TS), protein tyrosine phosphatase 1B (PTP-1B), and caspases.
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“The inhibitor (compound 12 in their study) was discovered through a disulfide-fragment screening approach known as tethering, whereby a library of 480 disulfide fragments was screened against KRAS(G12C) in the GDP-bound state using intact protein mass spectrometry (MS)88,90.”
From Advances in covalent drug discovery (2022) · cites this paper as [90]
In the citing paper
“Originally, MS-based compound screening grew out of ‘tethering’, which is a technique employed since 2000 that uses libraries of compounds linked to disulfides to identify fragments that bind cysteine-adjacent pockets90,147.”
From Advances in covalent drug discovery (2022) · cites this paper as [90]
Citations
Cites
A Combinatorial Approach Defines Specificities of Members of the Caspase Family and Granzyme B
Thornberry, N. A., Rano, T. A., Peterson, E. P., Rasper, D., Timkey, T., Garcia-Calvo, M. M., Houtzager, V. M., Nordstrom, P. A., Roy, S., Vaillancourt, J. P., et al. (1997) · Journal of Biological Chemistry · doi:10.1074/jbc.272.29.17907 · Cited by 2,089
Discovering High-Affinity Ligands for Proteins: SAR by NMR
Shuker, S. B., Hajduk, P. J., Meadows, R. P., & Fesik, S. W. (1996) · Science · doi:10.1126/science.274.5292.1531 · Cited by 2,045
Structural Mechanism for STI-571 Inhibition of Abelson Tyrosine Kinase
Schindler, T. H., Bornmann, W. G., Pellicena, P., Miller, W. T., Clarkson, B., & Kuriyan, J. (2000) · Science · doi:10.1126/science.289.5486.1938 · Cited by 1,785
The Conformational Plasticity of Protein Kinases
Huse, M., & Kuriyan, J. (2002) · Cell · doi:10.1016/s0092-8674(02)00741-9 · Cited by 1,760
Irreversible Inhibitors of Serine, Cysteine, and Threonine Proteases
Powers, J. C., Asgian, J. L., Ekici, Ö. D., & James, K. E. (2002) · Chemical Reviews · doi:10.1021/cr010182v · Cited by 1,090 · cited 1×
“These include proteases (27, 29, 30, 57, 59, 63), kinases (24, 74), and phosphatases (4, 28, 50), all classes of enzymes that are heavily pursued in the pharmaceutical industry.”
BackgroundA Common Mechanism Underlying Promiscuous Inhibitors from Virtual and High-Throughput Screening
McGovern, S. L., Caselli, E., Grigorieff, N., & Shoichet, B. K. (2002) · Journal of Medicinal Chemistry · doi:10.1021/jm010533y · Cited by 1,048
Inhibition of Human Caspases by Peptide-based and Macromolecular Inhibitors
Garcia-Calvo, M. M., Peterson, E. P., Leiting, B., Ruel, R., Nicholson, D. W., & Thornberry, N. A. (1998) · Journal of Biological Chemistry · doi:10.1074/jbc.273.49.32608 · Cited by 980
On the attribution and additivity of binding energies
Jencks, W. P. (1981) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.78.7.4046 · Cited by 938
Inhibition of p38 MAP kinase by utilizing a novel allosteric binding site
Pargellis, C., Tong, L., Churchill, L., Cirillo, P. F., Gilmore, T., Graham, A. G., Grob, P. M., Hickey, E. R., Moss, N., Pav, S., et al. (2002) · Nature Structural Biology · doi:10.1038/nsb770 · Cited by 834
Unraveling hot spots in binding interfaces: progress and challenges
DeLano, W. L. (2002) · Current Opinion in Structural Biology · doi:10.1016/s0959-440x(02)00283-x · Cited by 767
Research works printed but not linked: 1
- Graczyk PP, 1999, Restor. Neurol. Neurosci., 14, 1
Cited by
Sorted by citations
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Hajduk, P., & Greer, J. (2007) · Nature reviews. Drug discovery · doi:10.1038/nrd2220 · Cited by 1,004
Small-Molecule Inhibitors of Protein-Protein Interactions: Progressing toward the Reality
Arkin, M. R., Tang, Y., & Wells, J. A. (2014) · Chemistry & Biology · doi:10.1016/j.chembiol.2014.09.001 · Cited by 1,065
Self-citationNavigating chemical space for biology and medicine
Lipinski, C. A., & Hopkins, A. L. (2004) · Nature · doi:10.1038/nature03193 · Cited by 1,028
Advances in covalent drug discovery
Boike, L., Henning, N. J., & Nomura, D. K. (2022) · Nature Reviews Drug Discovery · doi:10.1038/s41573-022-00542-z · Cited by 823
Allosteric regulation and catalysis emerge via a common route
Goodey, N. M., & Benkovic, S. J. (2008) · Nature Chemical Biology · doi:10.1038/nchembio.98 · Cited by 668
Erlanson, D. A., McDowell, R. S., & O'Brien, T. (2004) · Journal of Medicinal Chemistry · doi:10.1021/jm040031v · Cited by 645
Self-citationFlexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners
Oldfield, C. J., Meng, J., Yang, J. Y., Yang, M. Q., Uversky, V. N., & Dunker, A. K. (2008) · BMC Genomics · doi:10.1186/1471-2164-9-s1-s1 · Cited by 608
Dirksen, A., Dirksen, S., Hackeng, T. M., & Dawson, P. E. (2006) · Journal of the American Chemical Society · doi:10.1021/ja067189k · Cited by 431
Perspectives on NMR in drug discovery: a technique comes of age
Pellecchia, M., Bertini, I., Cowburn, D., Dalvit, C., Giralt, E., Jahnke, W., James, T. L., Homans, S. W., Kessler, H., Luchinat, C., et al. (2008) · Nature Reviews Drug Discovery · doi:10.1038/nrd2606 · Cited by 437
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Schwartz, T. W., Frimurer, T. M., Holst, B., ROSENKILDE, M. M., & Elling, C. (2006) · The Annual Review of Pharmacology and Toxicology · doi:10.1146/annurev.pharmtox.46.120604.141218 · Cited by 407
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Blay, V., Tolani, B., Ho, S. P., & Arkin, M. R. (2020) · Drug Discovery Today · doi:10.1016/j.drudis.2020.07.024 · Cited by 419
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Ivanov, A. A., Khuri, F. R., & Fu, H. (2013) · Trends in Pharmacological Sciences · doi:10.1016/j.tips.2013.04.007 · Cited by 401
Nanotechnology, nanomedicine, and the development of new, effective therapies for cancer
Kawasaki, E. S., & Player, A. N. (2005) · Nanomedicine Nanotechnology Biology and Medicine · doi:10.1016/j.nano.2005.03.002 · Cited by 372
Kalia, J., & Raines, R. T. (2009) · Current Organic Chemistry · doi:10.2174/138527210790069839 · Cited by 369
Ras Conformational Ensembles, Allostery, and Signaling
Lu, S., Jang, H., Muratcioglu, S., Gursoy, A., Keskin, O., Nussinov, R., & Zhang, J. (2016) · Chemical Reviews · doi:10.1021/acs.chemrev.5b00542 · Cited by 355
Herrmann, A. (2013) · Chemical Society Reviews · doi:10.1039/c3cs60336a · Cited by 359
Fragment-based lead discovery: leads by design
Carr, R. A. E., Congreve, M., Murray, C. W., & Rees, D. C. (2005) · Drug Discovery Today · doi:10.1016/s1359-6446(05)03511-7 · Cited by 343
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Oncogenic protein interfaces: small molecules, big challenges
Nero, T. L., Morton, C. J., Holien, J. K., Wielens, J., & Parker, M. W. (2014) · Nature Reviews Cancer · doi:10.1038/nrc3690 · Cited by 312
The pharmacological landscape and therapeutic potential of serine hydrolases
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Krishnamurthy, V. M., Semetey, V., Bracher, P. J., Shen, N., & Whitesides, G. M. (2007) · Journal of the American Chemical Society · doi:10.1021/ja066780e · Cited by 298
Walsh, D. P., & Chang, Y. (2006) · Chemical Reviews · doi:10.1021/cr0404141 · Cited by 299
The impact of click chemistry in medicinal chemistry
Hou, J., Liu, X., Shen, J., Zhao, G., & Wang, P. G. (2012) · Expert Opinion on Drug Discovery · doi:10.1517/17460441.2012.682725 · Cited by 294
Smith, M. C. P., & Gestwicki, J. E. (2012) · Expert Reviews in Molecular Medicine · doi:10.1017/erm.2012.10 · Cited by 297
Introduction to Fragment-Based Drug Discovery
Erlanson, D. A. (2011) · Topics in current chemistry · doi:10.1007/128_2011_180 · Cited by 268
Self-citationKeserű, G. M., Erlanson, D. A., Ferenczy, G. G., Hann, M. M., Murray, C. W., & Pickett, S. D. (2016) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.6b00197 · Cited by 244
Self-citationDiscovery of an allosteric site in the caspases
Hardy, J. A., Lam, J. W., Nguyen, J. T., O'Brien, T., & Wells, J. A. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0404781101 · Cited by 236
Self-citationMolecular dynamics in drug design.
Zhao, H.-T., & Caflisch, A. (2015) · European journal of medicinal chemistry · doi:10.1016/j.ejmech.2014.08.004 · Cited by 213
Mondal, M., & Hirsch, A. K. H. (2015) · Chemical Society Reviews · doi:10.1039/c4cs00493k · Cited by 216
Fragment-based drug discovery using NMR spectroscopy
Harner, M. J., Frank, A. O., & Fesik, S. W. (2013) · Journal of Biomolecular NMR · doi:10.1007/s10858-013-9740-z · Cited by 221
Cryptic binding sites on proteins: definition, detection, and druggability
Vajda, S., Beglov, D., Wakefield, A., Egbert, M. E., & Whitty, A. (2018) · Current Opinion in Chemical Biology · doi:10.1016/j.cbpa.2018.05.003 · Cited by 215
Card, G. L., Blasdel, L. K., England, B. P., Zhang, C., Suzuki, Y., Gillette, S., Fong, D., Ibrahim, P. N., Artis, D. R., Bollag, G. E., et al. (2005) · Nature Biotechnology · doi:10.1038/nbt1059 · Cited by 208
Application of Fragment-Based Drug Discovery to Versatile Targets
Li, Q. (2020) · Frontiers in Molecular Biosciences · doi:10.3389/fmolb.2020.00180 · Cited by 212
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Jubb, H. C., Higueruelo, A. P., Winter, A., & Blundell, T. L. (2012) · Trends in Pharmacological Sciences · doi:10.1016/j.tips.2012.03.006 · Cited by 190
In situclick chemistry: a powerful means for lead discovery
Sharpless, K. B., & Manetsch, R. (2006) · Expert Opinion on Drug Discovery · doi:10.1517/17460441.1.6.525 · Cited by 182
Keedy, D. A., Hill, Z. B., Biel, J. T., Kang, E., Rettenmaier, T. J., Brandão-Neto, J., Pearce, N. M., von Delft, F., Wells, J. A., & Fraser, J. S. (2018) · eLife · doi:10.7554/elife.36307 · Cited by 182
Self-citationBabaoglu, K., Simeonov, A. M., Irwin, J. J., Nelson, M. E., Feng, B. Y., Thomas, C. J., Cancian, L., Costi, M. P., Maltby, D. A., Jadhav, A., et al. (2008) · Journal of Medicinal Chemistry · doi:10.1021/jm701500e · Cited by 180
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Zhou, T., Sun, L., Humphreys, J., & Goldsmith, E. J. (2006) · Structure · doi:10.1016/j.str.2006.04.006 · Cited by 164
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Zhang, A. X., Murelli, R. P., Bařinka, C., Michel, J., Cocleaza, A., Jorgensen, W. L., Lubkowski, J. T., & Spiegel, D. A. (2010) · Journal of the American Chemical Society · doi:10.1021/ja104591m · Cited by 161
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Dubiella, C., Pinch, B. J., Koikawa, K., Zaidman, D., Poon, E., Manz, T. D., Nabet, B., He, S., Resnick, E., Rogel, A., et al. (2021) · Nature Chemical Biology · doi:10.1038/s41589-021-00786-7 · Cited by 163
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Almo, S. C., Bonanno, J. B., Sauder, J. M., Emtage, S., DiLorenzo, T. P., Malashkevich, V. N., Wasserman, S. R., Swaminathan, S., Eswaramoorthy, S., Agarwal, R., et al. (2007) · Journal of Structural and Functional Genomics · doi:10.1007/s10969-007-9036-1 · Cited by 160
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Patel, D., Bauman, J. D., & Arnold, E. (2014) · Progress in Biophysics and Molecular Biology · doi:10.1016/j.pbiomolbio.2014.08.004 · Cited by 112
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Unique MAP Kinase binding sites
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Wiseman, R. L., Johnson, S. M., Kelker, M. S., Foss, T. R., Wilson, I. A., & Kelly, J. W. (2005) · Journal of the American Chemical Society · doi:10.1021/ja042929f · Cited by 104
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Ji, H., Stanton, B. Z., Igarashi, J., Li, H., Pavel Martasek, E., Roman, L. J., Poulos, T. L., & Silverman, R. B. (2008) · Journal of the American Chemical Society · doi:10.1021/ja0772041 · Cited by 100
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Dalton, S. E., & Campos, S. (2019) · ChemBioChem · doi:10.1002/cbic.201900674 · Cited by 101
Kawatkar, S. P., Wang, H., Czermiński, R., & Joseph‐McCarthy, D. (2009) · Journal of Computer-Aided Molecular Design · doi:10.1007/s10822-009-9281-4 · Cited by 101
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Wang, X., Cao, Q., Zhang, Y., & Su, X. (2014) · The Annual Review of Pharmacology and Toxicology · doi:10.1146/annurev-pharmtox-010814-124414 · Cited by 101
Auclair, J. R., Boggio, K. J., Petsko, G. A., Ringe, D., & Agar, J. N. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1015463107 · Cited by 93
Elling, C., Frimurer, T. M., Gerlach, L., Jørgensen, R., Holst, B., & Schwartz, T. W. (2006) · Journal of Biological Chemistry · doi:10.1074/jbc.m512510200 · Cited by 93
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Astle, J. M., Simpson, L. S., Huang, Y., Reddy, M. M., Wilson, R. W., Connell, S., Wilson, J., & Kodadek, T. J. (2010) · Chemistry & Biology · doi:10.1016/j.chembiol.2009.12.015 · Cited by 88
Raimundo, B. C., Oslob, J. D., Braisted, A. C., Hyde, J., McDowell, R. S., Randal, M., Waal, N. D., Wilkinson, J., Yu, C. H., & Arkin, M. R. (2004) · Journal of Medicinal Chemistry · doi:10.1021/jm049967u · Cited by 86
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Pellecchia, M. (2005) · Chemistry & Biology · doi:10.1016/j.chembiol.2005.08.013 · Cited by 86
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Kathman, S. G., & Statsyuk, A. V. (2016) · MedChemComm · doi:10.1039/c5md00518c · Cited by 85
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Erlanson, D. A., Arndt, J. W., Cancilla, M. T., Cao, K., Elling, R. A., English, N., Friedman, J., Hansen, S. K., Hession, C., Joseph, I. B. J., et al. (2011) · Bioorganic & Medicinal Chemistry Letters · doi:10.1016/j.bmcl.2011.03.032 · Cited by 84
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Sheng, C., & Zhang, W. (2013) · Medicinal Research Reviews · doi:10.1002/med.21255 · Cited by 80
Cardoso, R., Love, R., Nilsson, C. L., Bergqvist, S., Nowlin, D., Yan, J., Liu, K. K. ‐., Zhu, J., Chen, P., Deng, Y., et al. (2012) · Protein Science · doi:10.1002/pro.2172 · Cited by 79
Rudolph, J. (2007) · Nature reviews. Cancer · doi:10.1038/nrc2087 · Cited by 79
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Bertini, I., Calderone, V., Fragai, M., Giachetti, A., Loconte, M., Luchinat, C., Maletta, M., Nativi, C., & Yeo, K. J. (2007) · Journal of the American Chemical Society · doi:10.1021/ja065156z · Cited by 75
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Metadata
- Authors
- Erlanson, D. A., Wells, J. A., & Braisted, A. C.
- Affiliations
- Sunesis (United States) (US)
- Venue
- Annual Review of Biophysics and Biomolecular Structure
- Publisher
- Annual Reviews
- Published
- 2004-06-09
- Volume
- 33
- Issue
- 1
- Pages
- 199-223
- ISSN
- 1056-8700 (ISSN-L)
- 1545-4266
- OpenAlex
- W2138958920
- Cited by
- 385
- References
- 78
- Citations by year
- 2026: 5 · 2025: 7 · 2024: 17 · 2023: 16 · 2022: 17 · 2021: 8 · 2020: 17 · 2019: 17 · 2018: 21 · 2017: 6 · 2016: 18 · 2015: 21 · 2014: 23 · 2013: 11 · 2012: 29
- FWCI
- 1.77
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Annual Review of Biophysics and Biomolecular Structure (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Sunesis
- Topics
- Life Sciences › Pharmacology, Toxicology and Pharmaceutics › Drug Discovery › Computational Drug Discovery Methods
- Physical Sciences › Chemistry › Organic Chemistry › Chemical Synthesis and Analysis
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Structural Biology › Enzyme Structure and Function
- Keywords
- tethering, fragment-based drug discovery, small-molecule fragments, protein-ligand binding, lead compound identification, interleukin-2, thymidylate synthase, PTP1B, caspases, protein inhibitors
- MeSH terms
- Binding Sites, Peptide Fragments, Protein Binding, Proteins, Drug Design, Protein Interaction Mapping, Protein Array Analysis
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