Allele-Specific Methylation of SPDEF: A Novel Moderator of Psychosocial Stress and Substance Abuse
Open accessAbstract
OBJECTIVE: Psychosocial stress is a key risk factor for substance abuse among adolescents. Recently, epigenetic processes such as DNA methylation have emerged as potential mechanisms that could mediate this relationship. The authors conducted a genome-wide methylation analysis to investigate whether differentially methylated regions are associated with psychosocial stress in an adolescent population. METHODS: A methylome-wide analysis of differentially methylated regions was used to examine a sample of 1,287 14-year-old adolescents (50.7% of them female) from the European IMAGEN study. The Illumina 450k array was used to assess DNA methylation, pyrosequencing was used for technical replication, and linear regression analyses were used to identify associations with psychosocial stress and substance use (alcohol and tobacco). Findings were replicated by pyrosequencing a test sample of 413 participants from the IMAGEN study. RESULTS: Hypermethylation in the sterile alpha motif/pointed domain containing the ETS transcription factor (SPDEF) gene locus was associated with a greater number of stressful life events in an allele-dependent way. Among individuals with the minor G-allele, SPDEF methylation moderated the association between psychosocial stress and substance abuse. SPDEF methylation interacted with lifetime stress in gray matter volume in the right cuneus, which in turn was associated with the frequency of alcohol and tobacco use. SPDEF was involved in the regulation of trans-genes linked to substance use. CONCLUSIONS: Taken together, the study findings describe a novel epigenetic mechanism that helps explain how psychosocial stress exposure influences adolescent substance abuse.
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A large EWAS in 1,287 adolescents found a post-hoc significant positive correlation of a CpG island within the promoter of SPDEF with the frequency of negative stressful life events in the past year.
“A large EWAS in 1,287 adolescents found post-hoc significant positive correlation of a CpG island within the promoter of the SAM pointed domain-containing Ets transcription factor (SPDEF, chromosomal location 6p21.31) with the frequency of negative stressful life events in the past year (Tay et al., 2019).”
From The applied implications of epigenetics in anxiety, affective and stress-related disorders - A review and synthesis on psychosocial stress, psychotherapy and prevention (2020) · cites this paper as Tay et al., 2019
The Results section, “Association of Differentially Methylated Regions With Frequency of Stressful Life Events” (page not supplied), reports a genome-wide significant region in the 5′ region of SPDEF and positive, significant correlations at two CpG sites in 1,287 adolescents. The Methods specify that the negative life events occurred in the past year. Our copy does not identify the region as a CpG island or describe the correlation finding as post-hoc; its stated post-hoc step was quality control. (LLM, conf=0.85)
Experimental — accuracy not yet measuredA significant interaction effect between the frequency of stressful life events in the past year and increased methylation was discerned to result in a higher incidence of lifetime binge drinking behavior.
“Moreover, a significant interaction effect between the frequency of stressful life events in the past year and increased methylation was discerned to result in an higher incidence of lifetime binge drinking behavior.”
From The applied implications of epigenetics in anxiety, affective and stress-related disorders - A review and synthesis on psychosocial stress, psychotherapy and prevention (2020) · cites this paper as Tay et al., 2019
The Questionnaire and Interview Data section says stressful events were measured over the past year and binge drinking was measured as lifetime frequency. The results report a significant interaction between stressful-event frequency and cg01395541 methylation for lifetime binge drinking (p=0.023). They describe methylation as moderating an association, however, rather than showing that the interaction resulted in a higher incidence of binge drinking. (LLM, conf=0.85)
Experimental — accuracy not yet measuredA methylation-expression quantitative trait loci (eQTL) analysis suggested that methylation would lead to expression changes in multiple trans-genes enriched for genes previously linked to opioid-related disorders, alcoholism and tobacco use, providing converging evidence for a novel epigenetic risk marker of adolescent substance abuse integrating the molecular effects of psychosocial stress.
“A methylation-expression quantitative trait loci (eQTL) analysis suggested that methylation would lead to expression changes in multiple trans-genes enriched for genes previously linked to opioid-related disorders, alcoholism and tobacco use, providing converging evidence for a novel epigenetic risk marker of adolescent substance abuse integrating the molecular effects of psychosocial stress (Tay”
From The applied implications of epigenetics in anxiety, affective and stress-related disorders - A review and synthesis on psychosocial stress, psychotherapy and prevention (2020) · cites this paper as Tay et al., 2019
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- Authors
- Tay, N., Macare, C., Liu, Y., Ruggeri, B., Jia, T., Chu, C., Biondo, F., Ing, A., Luo, Q., Sarkysian, D., Banaschewski, T., Barker, G. J., Bokde, A. L. W., Bromberg, U., Büchel, C., Quinlan, E. B., Desrivières, S., Flor, H., Frouin, V., Garavan, H., Gowland, P., Heinz, A., Ittermann, B., Martinot, J.-L., Artiges, E., Nees, F., Orfanos, D. P., Paus, T., Poustka, L., Hohmann, S., Fröhner, J. H., Smolka, M. N., Walter, H., Whelan, R., Frieling, H., Bleich, S., Barker, E. D., Syvänen, A.-C., Rüegg, J., Ekström, T. J., Bakalkin, G., Schumann, G., & the IMAGEN Consortium
- Affiliations
- King's College London (GB)
- The Centre for Population Neuroscience and Stratified Medicine and SGDP Centre, Institute of Psychiatry, King’s College London (Tay, Macare, Ruggeri, Jia, Chu, Biondo, Ing, Quinlan, Desrivières, Barker, Schumann); the Department of Biochemistry and Molecular Biology, MOE Key Laboratory of Metabolism and Molecular Medicine, School of Basic Medical Sciences, Fudan University, Shanghai, China (Liu); the Institute of Science and Technology of Brain-Inspired Intelligence, Fudan University, Shanghai, China ...
- ORCID
- Tay, Nicole
- Liu, Yun
- Ruggeri, Barbara
- Jia, Tianye
- Chu, Congying
- Biondo, Francesca
- Ing, Alex
- Luo, Qiang
- Banaschewski, Tobias
- Barker, Gareth J.
- Bokde, Arun L.W.
- Bromberg, Uli
- Büchel, Christian
- Quinlan, Erin Burke
- Desrivières, Sylvane
- Flor, Herta
- Frouin, Vincent
- Garavan, Hugh
- Gowland, Penny
- Heinz, Andreas
- Ittermann, Bernd
- Martinot, Jean-Luc
- Nees, Frauke
- Orfanos, Dimitri Papadopoulos
- Paus, Tomáš
- Poustka, Luise
- Hohmann, Sarah
- Fröhner, Juliane H.
- Smolka, Michael N.
- Walter, Henrik
- Whelan, Robert
- Frieling, Helge
- Bleich, Stefan
- Barker, Edward D.
- Rüegg, Joëlle
- Ekström, Tomas J.
- Bakalkin, Georgy
- Venue
- American Journal of Psychiatry
- Published
- 2019-02-01
- Volume
- 176
- Issue
- 2
- Pages
- 146-155
- ISSN
- 0002-953X (ISSN-L)
- 1535-7228
- OpenAlex
- W2905516213
- Cited by
- 18
- References
- 37
- Citations by year
- 2026: 1 · 2025: 2 · 2024: 2 · 2023: 3 · 2022: 2 · 2021: 2 · 2020: 3 · 2019: 3
- FWCI
- 0.71
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- American Journal of Psychiatry (publishedVersion)
- PubMed (publishedVersion)
- Research Portal (King's College London) (submittedVersion)
- Funders
- Eli Lilly and Company
- Fondation de l'Avenir pour la Recherche Médicale Appliquée
- University of Oxford
- Science Foundation Ireland (16/ERCD/3797, RO1 MH085772-01A1)
- Deutsche Forschungsgemeinschaft (SFB) 940/1, FOR1617, SM 80/7–2, 1, SM 80/7, SM 80/7-1, SFB940)
- Agence Nationale de la Recherche (AF12-NEUR0008–01 - WM2NA, AF12-NEUR0008-01, ANR-12-SAMA-0004, WM2NA, ANR-12)
- Fondation pour la Recherche Médicale (DPA20140629802)
- Fondation de France
- Vifor Pharma
- Mission Interministérielle de Lutte Contre les Drogues et les Conduites Addictives
- Servier
- H. Lundbeck A/S
- National Institutes of Health (16/ERCD/3797, EB020403)
- Medical Research Council (MR/N000390/1)
- National Institute of Mental Health (R01MH085772)
- National Institute of Biomedical Imaging and Bioengineering (U54EB020403)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
- Health Sciences › Medicine › Epidemiology › Substance Abuse Treatment and Outcomes
- Social Sciences › Psychology › Clinical Psychology › Child Abuse and Trauma
- Keywords
- SPDEF, DNA methylation, psychosocial stress, adolescent substance abuse, alcohol consumption, tobacco use, allele-specific methylation, differentially methylated regions, life events, gray matter volume, cuneus
- MeSH terms
- Underage Drinking, Adolescent, Alcohol Drinking, Alleles, Female, Humans, Male, Occipital Lobe, Organ Size, Stress, Psychological, DNA Methylation, Substance-Related Disorders, Epigenesis, Genetic, Proto-Oncogene Proteins c-ets, Tobacco Use, Gray Matter
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