The actin cytoskeleton-MRTF/SRF cascade transduces cellular physical niche cues to entrain the circadian clock
Open accessAbstract
The circadian clock is entrained to daily environmental cues. Integrin-linked signaling via actin cytoskeleton dynamics transduces physical niche cues from the extracellular matrix to myocardin-related transcription factor (MRTF)/serum response factor (SRF)-mediated transcription. The actin cytoskeleton organization and SRF-MRTF activity display diurnal oscillations. By interrogating disparate upstream events in the actin cytoskeleton-MRTF-A/SRF signaling cascade, we show that this pathway transduces extracellular niche cues to modulate circadian clock function. Pharmacological inhibition of MRTF-A/SRF by disrupting actin polymerization or blocking the ROCK kinase induced period lengthening with augmented clock amplitude, and genetic loss of function of Srf or Mrtfa mimicked the effects of treatment with actin-depolymerizing agents. In contrast, actin polymerization shortened circadian clock period and attenuated clock amplitude. Moreover, interfering with the cell–matrix interaction through blockade of integrin, inhibition of focal adhesion kinase (FAK, encoded by Ptk2) or attenuating matrix rigidity reduced the period length while enhancing amplitude. Mechanistically, we identified that the core clock repressors Per2, Nr1d1 and Nfil3 are direct transcriptional targets of MRTF-A/SRF in mediating actin dynamics-induced clock response. Collectively, our findings defined an integrin-actin cytoskeleton-MRTF/SRF pathway in linking clock entrainment with extracellular cues that might facilitate cellular adaptation to the physical niche environment.
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Regulators of the circadian clock are highly associated with liver metabolism and are known to be regulated by MRTFs.
“Regulators of the circadian clock are highly associated with liver metabolism and are known to be regulated by MRTFs [56, 57, 58].”
From Mechanical stiffness orchestrates distinct regulation of <scp>MRTFs</scp> and <scp>YAP</scp> / <scp>TAZ</scp> transcriptional cofactors in hepatocytes (2026) · cites this paper as [57]
The section “MRTF and SRF exert direct transcriptional control of core clock regulators” reports MRTF/SRF regulation of clock genes, including Nr1d1 and Per2. The Introduction and Discussion connect circadian clocks with metabolic disorders and potential metabolic regulation, but do not establish that these regulators are highly associated specifically with liver metabolism. No page numbers are available in our copy. (LLM, conf=0.86)
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The circadian molecular clock creates epidermal stem cell heterogeneity
Janich, P., Pascual, G., Merlos-Suárez, A., Batlle, E., Ripperger, J., Albrecht, U., Cheng, H.-Y. M., Obrietan, K., Di Croce, L., & Benitah, S. A. (2011) · Nature · doi:10.1038/nature10649 · Cited by 326 · see citing works
Aging of the skeletal muscle extracellular matrix drives a stem cell fibrogenic conversion
Stearns-Reider, K. M., D'Amore, A., Beezhold, K., Rothrauff, B., Cavalli, L., Wagner, W. R., Vorp, D. A., Tsamis, A., Shinde, S., Zhang, C., et al. (2017) · Aging Cell · doi:10.1111/acel.12578 · Cited by 265 · see citing works
Basal lamina remodeling at the skeletal muscle stem cell niche mediates stem cell self-renewal
Rayagiri, S. S., Ranaldi, D., Raven, A., Mohamad Azhar, N. I. F., Lefebvre, O., Zammit, P. S., & Borycki, A.-G. (2018) · Nature Communications · doi:10.1038/s41467-018-03425-3 · Cited by 218 · see citing works
Blood-Borne Circadian Signal Stimulates Daily Oscillations in Actin Dynamics and SRF Activity
Gerber, A., Esnault, C., Aubert, G., Treisman, R., Pralong, F., & Schibler, U. (2013) · Cell · doi:10.1016/j.cell.2012.12.027 · Cited by 160 · see citing works
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Research works printed but not linked: 54
- Akashi, M. and Nishida, E. (2000). Involvement of the MAP kinase cascade in resetting of the mammalian circadian clock. Genes Dev. 14, 645-649. doi:10.1101/gad.14.6.645 · DOI
- Allingham, J. S., Klenchin, V. A. and Rayment, I. (2006). Actin-targeting natural products: structures, properties and mechanisms of action. Cell. Mol. Life Sci. 63, 2119-2134. doi:10.1007/s00018-006-6157-9 · DOI
- Balsalobre, A., Damiola, F. and Schibler, U. (1998). A serum shock induces circadian gene expression in mammalian tissue culture cells. Cell 93, 929-937. doi:10.1016/S0092-8674(00)81199-X · DOI · Paper page
- Balsalobre, A., Brown, S. A., Marcacci, L., Tronche, F., Kellendonk, C., Reichardt, H. M., Schutz, G. and Schibler, U. (2000). Resetting of circadian time in peripheral tissues by glucocorticoid signaling. Science 289, 2344-2347. doi:10.1126/science.289.5488.2344 · DOI · Paper page
- Buxton, O. M., Cain, S. W., O'connor, S. P., Porter, J. H., Duffy, J. F., Wang, W., Czeisler, C. A. and Shea, S. A. (2012). Adverse metabolic consequences in humans of prolonged sleep restriction combined with circadian disruption. Sci. Transl. Med. 4, 129ra43. doi:10.1126/scitranslmed.3003200 · DOI · Paper page
- Chatterjee, S., Yin, H., Nam, D., Li, Y. and Ma, K. (2014). Brain and muscle Arnt- like 1 promotes skeletal muscle regeneration through satellite cell expansion. Exp. Cell Res. 331, 200-210. doi:10.1016/j.yexcr.2014.08.041 · DOI
- Chatterjee, S., Nam, D., Guo, B., Kim, J. M., Winnier, G. E., Lee, J., Berdeaux, R., Yechoor, V. K. and Ma, K. (2013). Brain and muscle Arnt-like 1 is a key regulator of myogenesis. J. Cell Sci. 126, 2213-2224. doi:10.1242/jcs.120519 · DOI
- Chatterjee, S., Yin, H., Li, W., Lee, J., Yechoor, V. K. and Ma, K. (2019). The nuclear receptor and clock repressor Rev-erbalpha suppresses myogenesis. Sci. Rep. 9, 4585. doi:10.1038/s41598-019-41059-7 · DOI
- Chen, Z., Yoo, S. H., Park, Y. S., Kim, K. H., Wei, S., Buhr, E., Ye, Z. Y., Pan, H. L. and Takahashi, J. S. (2012). Identification of diverse modulators of central and peripheral circadian clocks by high-throughput chemical screening. Proc. Natl. Acad. Sci. USA 109, 101-106. doi:10.1073/pnas.1118034108 · DOI
- Cho, H., Zhao, X., Hatori, M., Yu, R. T., Barish, G. D., Lam, M. T., Chong, L. W., Ditacchio, L., Atkins, A. R., Glass, C. K. et al. (2012). Regulation of circadian behaviour and metabolism by REV-ERB-alpha and REV-ERB-beta. Nature 485, 123-127. doi:10.1038/nature11048 · DOI · Paper page
- Dadgar, S., Wang, Z., Johnston, H., Kesari, A., Nagaraju, K., Chen, Y. W., Hill, D. A., Partridge, T. A., Giri, M., Freishtat, R. J. et al. (2014). Asynchronous remodeling is a driver of failed regeneration in Duchenne muscular dystrophy. J. Cell Biol. 207, 139-158. doi:10.1083/jcb.201402079 · DOI
- Dibner, C., Schibler, U. and Albrecht, U. (2010). The mammalian circadian timing system: organization and coordination of central and peripheral clocks. Annu. Rev. Physiol. 72, 517-549. doi:10.1146/annurev-physiol-021909-135821 · DOI · Paper page
- Dong, Z., Zhang, G., Qu, M., Gimple, R. C., Wu, Q., Qiu, Z., Prager, B. C., Wang, X., Kim, L. J. Y., Morton, A. R. et al. (2019). Targeting glioblastoma stem cells through disruption of the circadian clock. Cancer Discov 9, 1556-1573. doi:10.1158/2159-8290.CD-19-0215 · DOI
- Esnault, C., Stewart, A., Gualdrini, F., East, P., Horswell, S., Matthews, N. and Treisman, R. (2014). Rho-actin signaling to the MRTF coactivators dominates the immediate transcriptional response to serum in fibroblasts. Genes Dev. 28, 943-958. doi:10.1101/gad.239327.114 · DOI
- Finger, A. M., Dibner, C. and Kramer, A. (2020). Coupled network of the circadian clocks: a driving force of rhythmic physiology. FEBS Lett. 594, 2734-2769. doi:10.1002/1873-3468.13898 · DOI
- Gao, H., Xiong, X., Lin, Y., Chatterjee, S. and Ma, K. (2020). The clock regulator Bmal1 protects against muscular dystrophy. Exp. Cell Res. 397, 112348. doi:10.1016/j.yexcr.2020.112348 · DOI
- Gualdrini, F., Esnault, C., Horswell, S., Stewart, A., Matthews, N. and Treisman, R. (2016). SRF Co-factors control the balance between cell proliferation and contractility. Mol. Cell 64, 1048-1061. doi:10.1016/j.molcel. 2016.10.016 · DOI · Paper page
- Hill, C. S., Wynne, J. and Treisman, R. (1995). The Rho family GTPases RhoA, Rac1, and CDC42Hs regulate transcriptional activation by SRF. Cell 81, 1159-1170. doi:10.1016/S0092-8674(05)80020-0 · DOI
- Karatsoreos, I. N., Bhagat, S., Bloss, E. B., Morrison, J. H. and Mcewen, B. S. (2011). Disruption of circadian clocks has ramifications for metabolism, brain, and behavior. Proc. Natl. Acad. Sci. USA 108, 1657-1662. doi:10.1073/pnas. 1018375108 · DOI · Paper page
- Karpowicz, P., Zhang, Y., Hogenesch, J. B., Emery, P. and Perrimon, N. (2013). The circadian clock gates the intestinal stem cell regenerative state. Cell Rep. 3, 996-1004. doi:10.1016/j.celrep.2013.03.016 · DOI
- Kettner, N. M., Katchy, C. A. and Fu, L. (2014). Circadian gene variants in cancer. Ann. Med. 46, 208-220. doi:10.3109/07853890.2014.914808 · DOI · Paper page
- Lin, H. H. and Farkas, M. E. (2018). Altered circadian rhythms and breast cancer: from the human to the molecular level. Front. Endocrinol. (Lausanne) 9, 219. doi:10.3389/fendo.2018.00219 · DOI
- Liu, A. C., Tran, H. G., Zhang, E. E., Priest, A. A., Welsh, D. K. and Kay, S. A. (2008). Redundant function of REV-ERBalpha and beta and non-essential role for Bmal1 cycling in transcriptional regulation of intracellular circadian rhythms. PLoS Genet. 4, e1000023. doi:10.1371/journal.pgen.1000023 · DOI
- Liu, R., Xiong, X., Nam, D., Yechoor, V. and Ma, K. (2020). SRF-MRTF signaling suppresses brown adipocyte development by modulating TGF-beta/BMP pathway. Mol. Cell. Endocrinol. 515, 110920. doi:10.1016/j.mce.2020.110920 · DOI
- Long, X., Creemers, E. E., Wang, D. Z., Olson, E. N. and Miano, J. M. (2007). Myocardin is a bifunctional switch for smooth versus skeletal muscle differentiation. Proc. Natl. Acad. Sci. USA 104, 16570-16575. doi:10.1073/pnas. 0708253104 · DOI
- Maartens, A. P. and Brown, N. H. (2015). Anchors and signals: the diverse roles of integrins in development. Curr. Top. Dev. Biol. 112, 233-272. doi:10.1016/bs.ctdb. 2014.11.020 · DOI
- Maldonado, M., Wong, L. Y., Echeverria, C., Ico, G., Low, K., Fujimoto, T., Johnson, J. K. and Nam, J. (2015). The effects of electrospun substrate- mediated cell colony morphology on the self-renewal of human induced pluripotent stem cells. Biomaterials 50, 10-19. doi:10.1016/j.biomaterials.2015. 01.037 · DOI
- Maldonado, M., Ico, G., Low, K., Luu, R. J. and Nam, J. (2016). Enhanced lineage- specific differentiation efficiency of human induced pluripotent stem cells by engineering colony dimensionality using electrospun scaffolds. Adv. Healthc Mater 5, 1408-1412. doi:10.1002/adhm.201600141 · DOI
- Maldonado, M., Luu, R. J., Ico, G., Ospina, A., Myung, D., Shih, H. P. and Nam, J. (2017). Lineage-and developmental stage-specific mechanomodulation of induced pluripotent stem cell differentiation. Stem. Cell Res. Ther. 8, 216. doi:10.1186/s13287-017-0667-2 · DOI
- Mcbeath, R., Pirone, D. M., Nelson, C. M., Bhadriraju, K. and Chen, C. S. (2004). Cell shape, cytoskeletal tension, and RhoA regulate stem cell lineage commitment. Dev. Cell 6, 483-495. doi:10.1016/S1534-5807(04)00075-9 · DOI
- Miano, J. M. (2003). Serum response factor: toggling between disparate programs of gene expression. J. Mol. Cell. Cardiol. 35, 577-593. doi:10.1016/S0022- 2828(03)00110-X · DOI
- Mocellin, S., Tropea, S., Benna, C. and Rossi, C. R. (2018). Circadian pathway genetic variation and cancer risk: evidence from genome-wide association studies. BMC Med. 16, 20. doi:10.1186/s12916-018-1010-1 · DOI
- Olson, E. N. and Nordheim, A. (2010). Linking actin dynamics and gene transcription to drive cellular motile functions. Nat. Rev. Mol. Cell Biol. 11, 353-365. doi:10.1038/nrm2890 · DOI · Paper page
- Oshima, T., Niwa, Y., Kuwata, K., Srivastava, A., Hyoda, T., Tsuchiya, Y., Kumagai, M., Tsuyuguchi, M., Tamaru, T., Sugiyama, A. et al. (2019). Cell- based screen identifies a new potent and highly selective CK2 inhibitor for modulation of circadian rhythms and cancer cell growth. Sci. Adv. 5, eaau9060. doi:10.1126/sciadv.aau9060 · DOI
- Plikus, M. V., Vollmers, C., De La Cruz, D., Chaix, A., Ramos, R., Panda, S. and Chuong, C. M. (2013). Local circadian clock gates cell cycle progression of transient amplifying cells during regenerative hair cycling. Proc. Natl. Acad. Sci. USA 110, E2106-E2115. doi:10.1073/pnas.1215935110 · DOI
- Posern, G. and Treisman, R. (2006). Actin' together: serum response factor, its cofactors and the link to signal transduction. Trends Cell Biol. 16, 588-596. doi:10.1016/j.tcb.2006.09.008 · DOI
- Preitner, N., Damiola, F., Lopez-Molina, L., Zakany, J., Duboule, D., Albrecht, U. and Schibler, U. (2002). The orphan nuclear receptor REV-ERBalpha controls circadian transcription within the positive limb of the mammalian circadian oscillator. Cell 110, 251-260. doi:10.1016/S0092-8674(02)00825-5 · DOI · Paper page
- Ramanathan, C., Kathale, N. D., Liu, D., Lee, C., Freeman, D. A., Hogenesch, J. B., Cao, R. and Liu, A. C. (2018). mTOR signaling regulates central and peripheral circadian clock function. PLoS Genet. 14, e1007369. doi:10.1371/journal.pgen.1007369 · DOI
- Romero, S., Le Clainche, C. and Gautreau, A. M. (2020). Actin polymerization downstream of integrins: signaling pathways and mechanotransduction. Biochem. J. 477, 1-21. doi:10.1042/BCJ20170719 · DOI
- Scheer, F. A., Hilton, M. F., Mantzoros, C. S. and Shea, S. A. (2009). Adverse metabolic and cardiovascular consequences of circadian misalignment. Proc. Natl. Acad. Sci. USA 106, 4453-4458. doi:10.1073/pnas.0808180106 · DOI · Paper page
- Schibler, U. and Sassone-Corsi, P. (2002). A web of circadian pacemakers. Cell 111, 919-922. doi:10.1016/S0092-8674(02)01225-4 · DOI
- Schlaepfer, D. D., Hanks, S. K., Hunter, T. and Van Der Geer, P. (1994). Integrin- mediated signal transduction linked to Ras pathway by GRB2 binding to focal adhesion kinase. Nature 372, 786-791. doi:10.1038/372786a0 · DOI · Paper page
- Shi, S. Q., Ansari, T. S., McGuinness, O. P., Wasserman, D. H. and Johnson, C. H. (2013). Circadian disruption leads to insulin resistance and obesity. Curr. Biol. 23, 372-381. doi:10.1016/j.cub.2013.01.048 · DOI · Paper page
- Solt, L. A., Wang, Y., Banerjee, S., Hughes, T., Kojetin, D. J., Lundasen, T., Shin, Y., Liu, J., Cameron, M. D., Noel, R. et al. (2012). Regulation of circadian behaviour and metabolism by synthetic REV-ERB agonists. Nature 485, 62-68. doi:10.1038/nature11030 · DOI
- Streuli, C. H. and Meng, Q. J. (2019). Influence of the extracellular matrix on cell- intrinsic circadian clocks. J. Cell Sci. 132, jcs207498. doi:10.1242/jcs.207498 · DOI
- Sulli, G., Rommel, A., Wang, X., Kolar, M. J., Puca, F., Saghatelian, A., Plikus, M. V., Verma, I. M. and Panda, S. (2018). Pharmacological activation of REV-ERBs is lethal in cancer and oncogene-induced senescence. Nature 553, 351-355. doi:10.1038/nature25170 · DOI
- Sun, Q., Chen, G., Streb, J. W., Long, X., Yang, Y., Stoeckert, C. J., Jr and Miano, J. M. (2006). Defining the mammalian CArGome. Genome Res. 16, 197-207. doi:10.1101/gr.4108706 · DOI
- Takahashi, J. S. (2017). Transcriptional architecture of the mammalian circadian clock. Nat. Rev. Genet. 18, 164-179. doi:10.1038/nrg.2016.150 · DOI
- Turek, F. W., Joshu, C., Kohsaka, A., Lin, E., Ivanova, G., Mcdearmon, E., Laposky, A., Losee-Olson, S., Easton, A., Jensen, D. R. et al. (2005). Obesity and metabolic syndrome in circadian Clock mutant mice. Science 308, 1043-1045. doi:10.1126/science.1108750 · DOI · Paper page
- Wang, D. Z., Li, S., Hockemeyer, D., Sutherland, L., Wang, Z., Schratt, G., Richardson, J. A., Nordheim, A. and Olson, E. N. (2002). Potentiation of serum response factor activity by a family of myocardin-related transcription factors. Proc. Natl. Acad. Sci. USA 99, 14855-14860. doi:10.1073/pnas.222561499 · DOI
- Wei, L., Wang, L., Carson, J. A., Agan, J. E., Imanaka-Yoshida, K. and Schwartz, R. J. (2001). beta1 integrin and organized actin filaments facilitate cardiomyocyte-specific RhoA-dependent activation of the skeletal alpha-actin promoter. FASEB J. 15, 785-796. doi:10.1096/fj.00-026com Welsh, D. K., Yoo, S. H., Liu, A. C., Takahashi, J. S. and Kay, S. A. (2004). Bioluminescence imaging of individual fibroblasts reveals persistent, independently phased circadian rhythms of clock gene expression. Curr. Biol. 14, 2289-2295. doi:10.1016/j.cub.2004.11.057 · DOI · Paper page
- Williams, J., Yang, N., Wood, A., Zindy, E., Meng, Q. J. and Streuli, C. H. (2018). Epithelial and stromal circadian clocks are inversely regulated by their mechano- matrix environment. J. Cell Sci. 131, jcs208223. doi:10.1242/jcs.208223 · DOI
- Yang, N., Williams, J., Pekovic-Vaughan, V., Wang, P., Olabi, S., Mcconnell, J., Gossan, N., Hughes, A., Cheung, J., Streuli, C. H. et al. (2017). Cellular mechano-environment regulates the mammary circadian clock. Nat. Commun. 8, 14287. doi:10.1038/ncomms14287 · DOI
- Yoo, S. H., Yamazaki, S., Lowrey, P. L., Shimomura, K., Ko, C. H., Buhr, E. D., Siepka, S. M., Hong, H. K., Oh, W. J., Yoo, O. J. et al. (2004). PERIOD2:: LUCIFERASE real-time reporting of circadian dynamics reveals persistent circadian oscillations in mouse peripheral tissues. Proc. Natl. Acad. Sci. USA 101, 5339-5346. doi:10.1073/pnas.0308709101 · DOI · Paper page
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Torres‐Ortiz, B. S., Pérez‐Calixto, D., Carretero‐Ortega, J., Guzman‐López, A. G., Pinto‐Dueñas, D. C., Hernández‐Juárez, M., Jiménez‐Escobar, A., Rodríguez‐Hernández, A., Díaz‐Bello, B., Serna‐Márquez, N., et al. (2026) · The FEBS Journal · doi:10.1111/febs.70570
- Authors
- Xiong, X., Li, W., Nam, J., Qu, M., Kay, S. A., & Ma, K.
- Affiliations
- City Of Hope National Medical Center (US)
- University of California, Riverside (US)
- University of Southern California (US)
- Corresponding author
- Ma, Ke
- Venue
- Journal of Cell Science
- Publisher
- The Company of Biologists
- Published
- 2022-10-01
- Volume
- 135
- Issue
- 19
- ISSN
- 0021-9533 (ISSN-L)
- 1477-9137
- PMC
- PMC10658898
- OpenAlex
- W4295259889
- Cited by
- 34
- References
- 4
- Citations by year
- 2026: 13 · 2025: 7 · 2024: 5 · 2023: 8 · 2022: 1
- FWCI
- 2.77
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Journal of Cell Science (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Cancer Institute
- Comprehensive Cancer Center, City of Hope
- National Cancer Center
- National Institutes of Health (1R01DK112794)
- Topics
- Life Sciences › Neuroscience › Endocrine and Autonomic Systems › Circadian rhythm and melatonin
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Cellular Mechanics and Interactions
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Light effects on plants
- Keywords
- circadian clock, clock entrainment, actin cytoskeleton, integrin signaling, extracellular matrix, cell-matrix interactions, focal adhesion kinase, matrix rigidity, actin polymerization, ROCK kinase, Per2, NR1D1, NFIL3, transcriptional regulation
- MeSH terms
- Myocardin, Actins, Cues, Actin Cytoskeleton, Nuclear Proteins, Transcription Factors, Trans-Activators, Integrins, Serum Response Factor, Circadian Clocks
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