Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their applications

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A gene-by-gene population genomics platform: de novo assembly, annotation and genealogical analysis of 108 representative Neisseria meningitidis genomes

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The impact of the EU general data protection regulation on scientific research

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Comparative analysis of core genome MLST and SNP typing within a European Salmonella serovar Enteritidis outbreak

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Extended Multilocus Sequence Analysis to Describe the Global Population Structure of the Genus Brucella: Phylogeography and Relationship to Biovars

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Core Genome Multilocus Sequence Typing Scheme for Stable, Comparative Analyses of Campylobacter jejuni and C. coli Human Disease Isolates

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Determination of Microbial Diversity of Aeromonas Strains on the Basis of Multilocus Sequence Typing, Phenotype, and Presence of Putative Virulence Genes

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Real-Time Genomic Epidemiological Evaluation of Human Campylobacter Isolates by Use of Whole-Genome Multilocus Sequence Typing

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MOST: a modified MLST typing tool based on short read sequencing

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Database-driven Multi Locus Sequence Typing (MLST) of bacterial pathogens

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Target Gene Sequencing To Characterize the Penicillin G Susceptibility of Neisseria meningitidis

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Multilocus sequence typing by blast from de novo assemblies against PubMLST

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A Longitudinal 6-Year Study of the Molecular Epidemiology of Clinical Campylobacter Isolates in Oxfordshire, United Kingdom

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Using MLST to Study Bacterial Variation: Prospects in the Genomic Era

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stringMLST: a fast k-mer based tool for multilocus sequence typing

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Independent evolution of the core and accessory gene sets in the genus Neisseria: insights gained from the genome of Neisseria lactamica isolate 020-06

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The changing epidemiology of invasive Haemophilus influenzae disease: Emergence and global presence of serotype a strains that may require a new vaccine for control

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Microbiome Data Science: Understanding Our Microbial Planet

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Automated extraction of typing information for bacterial pathogens from whole genome sequence data: Neisseria meningitidis as an exemplar

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Defining a Core Genome Multilocus Sequence Typing Scheme for the Global Epidemiology of Vibrio parahaemolyticus

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Evaluation of phylogenetic reconstruction methods using bacterial whole genomes: a simulation based study

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Population and Functional Genomics of Neisseria Revealed with Gene-by-Gene Approaches

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Multicenter Study for Defining the Breakpoint for Rifampin Resistance in Neisseria meningitidis by rpoB Sequencing

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Target Gene Sequencing To Define the Susceptibility of Neisseria meningitidis to Ciprofloxacin

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Diversity of O Antigens within the Genus Cronobacter: from Disorder to Order

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Ensuring backwards compatibility: traditional genotyping efforts in the era of whole genome sequencing

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Glucose Metabolism via the Entner-Doudoroff Pathway in Campylobacter: A Rare Trait that Enhances Survival and Promotes Biofilm Formation in Some Isolates

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Database for the ampC alleles in Acinetobacter baumannii

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A RESTful application programming interface for the PubMLST molecular typing and genome databases

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Multilocus Sequence Typing of Candida tropicalis Shows the Presence of Different Clonal Clusters and Fluconazole Susceptibility Profiles in Sequential Isolates from Candidemia Patients in São Paulo, Brazil

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AgdbNet – antigen sequence database software for bacterial typing

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Integrated data collection on zoonoses in the European Union, from animals to humans, and the analyses of the data

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Molecular characterization of invasive capsule null Neisseria meningitidis in South Africa

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Molecular Epidemiology of Carbapenem-Resistant Acinetobacter baumannii in a Tertiary Care Hospital in Egypt: Clonal Spread of bla OXA-23

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Improved multilocus sequence typing of Burkholderia pseudomallei and closely related species

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Identification of Novel Sequence Types among Staphylococcus haemolyticus Isolated from Variety of Infections in India

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Genotype distribution of Chinese Mycoplasma bovis isolates and their evolutionary relationship to strains from other countries

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Vibrio parahaemolyticus Isolates from Southeastern Chinese Coast Are Genetically Diverse with Circulation of Clonal Complex 3 Strains Since 2002

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MLSTar: automatic multilocus sequence typing of bacterial genomes in R

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Sharing the Knowledge: Sharing Aggregate Genomic Findings with Research Participants in Developing Countries

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Population genetic and evolution analysis of controversial genus Edwardsiella by multilocus sequence typing

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Lineage structure of Streptococcus pneumoniae may be driven by immune selection on the groEL heat-shock protein

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Meningococcal vaccine antigen diversity in global databases

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Organic Turkey Flocks: A Reservoir of Streptococcus gallolyticus subspecies gallolyticus

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Genotypic and Phenotypic Characterization of the O -Linked Protein Glycosylation System Reveals High Glycan Diversity in Paired Meningococcal Carriage Isolates

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Persistence of Mycoplasma hyopneumoniae sequence types in spite of a control program for enzootic pneumonia in pigs

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A world without bacterial meningitis: how genomic epidemiology can inform vaccination strategy

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Development of a multilocus sequence typing scheme for Rhodococcus equi

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Genetic Analysis of Vibrio parahaemolyticus O3:K6 Strains That Have Been Isolated in Mexico Since 1998

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The Applied Development of a Tiered Multilocus Sequence Typing (MLST) Scheme for Dichelobacter nodosus

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Establishment of the European meningococcal strain collection genome library (EMSC-GL) for the 2011 to 2012 epidemiological year

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Typing and surface charges of the variable loop regions of PorB from Neisseria meningitidis

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Multilocus Sequence Typing (MLST) for Cronobacter spp.

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Genomic surveillance and meningococcal group B vaccine coverage estimates after introduction of the vaccine into the national immunisation programme in the UK

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Changes in the incidence of invasive disease due to Streptococcus pneumoniae, Haemophilus influenzae, and Neisseria meningitidis during the COVID-19 pandemic in 26 countries and territories in the Invasive Respiratory Infection Surveillance Initiative: a prospective analysis of surveillance data

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Surveillance of Enterococcus spp. reveals distinct species and antimicrobial resistance diversity across a One-Health continuum

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Prediction of strain level phage-host interactions across the Escherichia genus using only genomic information

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