WikiPathways: Pathway Editing for the People
Pico, Alexander R, Kelder, Thomas, van Iersel, Martijn P, Hanspers, Kristina, Conklin, Bruce R, Evelo, Chris·2008·PLoS Biology
Cited by (732)
Items 201–300 of 732
- Drugst.One — a plug-and-play solution for online systems medicine and network-based drug repurposingAndreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D. Bader, Sylvie Baier, David B. Blumenthal, Jing Chen, Maria L. Elkjaer, Carlos Garcia-Hernandez et al. · 2024 · Nucleic Acids Research
- A high-throughput platform for interpretation of metabolite profile data from pepper (Capsicum) fruits of 13 phenotypes associated with different fruit maturity statesTae Jin Kim, Hyejin Hyeon, Nam Il Park, Tae Gyu Yi, Sun‐Hyung Lim, Soo-Yun Park, Sun‐Hwa Ha, Jae Kwang Kim · 2020 · Food Chemistry
- Adjunct N-Acetylcysteine Treatment in Hospitalized Patients With HIV-Associated Tuberculosis Dampens the Oxidative Stress in Peripheral Blood: Results From the RIPENACTB Study TrialIzabella Picinin Safe, Eduardo P. Amaral, Mariana Araújo‐Pereira, Marcus Lacerda, Vitoria Silva Printes, Alexandra B. Souza, Francisco Beraldi‐Magalhães, Wuelton Marcelo Monteiro, Vanderson de Souza Sampaio, Beatriz Barreto‐Duarte et al. · 2021 · Frontiers in Immunology
- Signaling network of dendritic cells in response to pathogens: a community-input supported knowledgebaseSonali Patil, Hanna Pinças, Jeremy Seto, German Nudelman, Irina Nudelman, Stuart C. Sealfon · 2010 · BMC Systems Biology
- Toxins and stress in fish: Proteomic analyses and response networkKarim Mezhoud, Simone Puiseux‐Dao, Marc Edery · 2011 · Toxicon
- Human Prostate Cancer Hallmarks MapDipamoy Datta, Md. Aftabuddin, Dinesh Kumar Gupta, Sanghamitra Raha, Prosenjit Sen · 2016 · Scientific Reports
- Multi-omic human pancreatic islet endoplasmic reticulum and cytokine stress response mapping provides type 2 diabetes genetic insightsEishani Kumar Sokolowski, Romy Kursawe, Vijay Selvam, Redwan M. Bhuiyan, Asa Thibodeau, Chi George Zhao, Cassandra Nichole Spracklen, Duygu Ucar, Michael L. Stitzel · 2024 · Cell Metabolism
- Chapter 3: Small Molecules and DiseaseDavid Scott Wishart · 2012 · PLoS Computational Biology
- WikiGenomes: an open web application for community consumption and curation of gene annotation data in WikidataTim Putman, Sebastien Lelong, Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Colin M. Diesh, Nathan Dunn, Monica C. Muñoz-Torres, Gregory S. Stupp, Chunlei Wu, Andrew I. Su et al. · 2017 · Database
- PAGER: constructing PAGs and new PAG-PAG relationships for network biologyYue, Zongliang, Kshirsagar, Madhura M., Nguyen, Thanh, Suphavilai, Chayaporn, Neylon, Michael T., Zhu, Liugen, Ratliff, Timothy, Chen, Jake Y. · 2015 · Bioinformatics
- Relating protein adduction to gene expression changes: a systems approachBing Zhang, Zhiao Shi, Dexter T. Duncan, Naresh Prodduturi, Lawrence J. Marnett, Daniel C. Liebler · 2011 · Molecular BioSystems
- Transcriptional profiling of angiogenesis activities of calycosin in zebrafishShang Li, Shaoke Lou, Benson U. W. Lei, Ting‐Fung Chan, Yiu Wa Kwan, Shun‐Wan Chan, Gph Leung, Stephen Kwok‐Wing Tsui, Simon Ming‐Yuen Lee · 2011 · Molecular BioSystems
- ESCC ATLAS: A population wide compendium of biomarkers for Esophageal Squamous Cell CarcinomaAsna Tungekar, Sumana Mandarthi, Pooja R. Mandaviya, Veerendra P. Gadekar, Ananthajith Tantry, Sowmya Kotian, Jyotshna Reddy, Divya Prabha, Sushma Bhat, Sweta Sahay et al. · 2018 · Scientific Reports
- Comparative analysis and assessment of M. tuberculosis H37Rv protein-protein interaction datasetsHufeng Zhou, Limsoon Wong · 2011 · BMC Genomics
- A leaky gut dysregulates gene networks in the brain associated with immune activation, oxidative stress, and myelination in a mouse model of colitisJake Sondag Boles, Maeve E. Krueger, Janna E. Jernigan, Cassandra L. Cole, Noelle K. Neighbarger, Oihane Uriarte Huarte, Malú G. Tansey · 2024 · Brain Behavior and Immunity
- Integrative computational biology for cancer researchKristen Fortney, Igor Jurišica · 2011 · Human Genetics
- Evaluating Protein-protein Interaction (PPI) Networks for Diseases Pathway, Target Discovery, and Drug-design Using ‘In silico Pharmacology’Chiranjib Chakraborty, George C, Luonan Chen, Hailong Zhu · 2014 · Current Protein and Peptide Science
- A collaborative methodology for developing a semantic model for interlinking Cancer Chemoprevention linked-data sourcesDimitris Zeginis, Ali Hasnain, Νικόλαος Λούτας, Helena Deus, Ronan Fox, Konstantinos A. Tarabanis · 2014 · Semantic Web
- The Stem Cell Discovery Engine: an integrated repository and analysis system for cancer stem cell comparisonsShannan J. Ho Sui, Kimberly Begley, Dorothy Silver Reilly, Brad Chapman, Ray McGovern, Philippe Rocca‐Serra, Eamonn Maguire, Gabriel M. Altschuler, Terah A.A. Hansen, Ramakrishna R. Sompallae et al. · 2011 · Nucleic Acids Research
- PDBWiki: added value through community annotation of the Protein Data BankHenning Stehr, José M. Duarte, Michael Lappé, Jong Bhak, Dan M Bolser · 2010 · Database
- Measuring passive myocardial stiffness in D rosophila melanogaster to investigate diastolic dysfunctionGaurav N. Kaushik, Alexander C. Zambon, Alexander Fuhrmann, Sanford I. Bernstein, Rolf Bodmer, Adam Jeffrey Engler, Anthony Cammarato · 2012 · Journal of Cellular and Molecular Medicine
- Collaboratively charting the gene-to-phenotype network of human congenital heart defectsRoland Barriot, Jeroen Breckpot, Bernard Thienpont, Sylvain Brohée, Steven Van Vooren, Bert Coessens, Léon-Charles Tranchevent, Peter Van Loo, Marc H. M. L. Gewillig, Koenraad Devriendt et al. · 2010 · Genome Medicine
- Specificity of the osmotic stress response in Candida albicans highlighted by quantitative proteomicsMette D. Jacobsen, Robert Jeffrey Beynon, Lee A. Gethings, Amy J. Claydon, James Langridge, Johannes P.C. Vissers, Alistair J. P. Brown, Dean E. Hammond · 2018 · Scientific Reports
- Elevated dimethylarginine, ATP, cytokines, metabolic remodeling involving tryptophan metabolism and potential microglial inflammation characterize primary open angle glaucomaSujith Kumar Pulukool, Sai Krishna Srimadh Bhagavatham, Vishnu Kannan, Piruthivi Sukumar, Rajesh Babu Dandamudi, Shamika Ghaisas, Haripriya Kunchala, Darshan Saieesh, Ashwin Ashok Naik, Ashish Pargaonkar et al. · 2021 · Scientific Reports
- Sodium-glucose cotransporter 2 inhibitors induce anti-inflammatory and anti-ferroptotic shift in epicardial adipose tissue of subjects with severe heart failureBarbora Judita Kasperová, Miloš Mráz, Petr Svoboda, Daniel Hlaváček, Helena Kratochvílová, István Módos, Nikola Vrzáčková, Peter Ivák, Petra Janovská, Tatyana Kobets et al. · 2024 · Cardiovascular Diabetology
- On Crowd-verification of Biological NetworksSam Ansari, Jean Binder, Stéphanie Boué, Anselmo Di Fabio, William Hayes, Julia Hoeng, Anita R. Iskandar, Robin J. Kleiman, Raquel Norel, Bruce O'neel et al. · 2013 · Bioinformatics and Biology Insights
- Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)Dagmar Waltemath, Frank Bergmann, Claudine Chaouiya, Tobias Czauderna, Padraig Gleeson, Carole Goble, Martin Golebiewski, Michael Hucka, Nick Juty, Olga Krebs et al. · 2014 · Standards in Genomic Sciences
- Comprehensive and critical evaluation of individualized pathway activity measurement tools on pan-cancer dataSangsoo Lim, Sangseon Lee, Inuk Jung, Sung-Min Rhee, Sun Kim · 2018 · Briefings in Bioinformatics
- WebLab: a data-centric, knowledge-sharing bioinformatic platformXiao Liu, Jianmin Wu, Jun Wang, Xiaochuan Liu, Shuqi Zhao, Zhe Li, Lei Kong, Xiaocheng Gu, Jingchu Luo, Ge Gao · 2009 · Nucleic Acids Research
- Knowledge-guided learning methods for integrative analysis of multi-omics dataWenrui Li, Jenna L. Ballard, Yize Zhao, Qi Long · 2024 · Computational and Structural Biotechnology Journal
- Classification of signaling proteins based on molecular star graph descriptors using Machine Learning modelsCarlos Fernandez-Lozano, Rubén F Cuiñas, José Antonio Seoane, Enrique Fernández-Blanco, Julián Dorado, Cristian Robert Munteanu · 2015 · Journal of Theoretical Biology
- Scientific Lenses to Support Multiple Views over Linked Chemistry DataColin R. Batchelor, Christian Y. A. Brenninkmeijer, Christine H. Chichester, Mark Davies, Daniela Digles, Ian Dunlop, Chris T. Evelo, Anna Gaulton, Carole Goble, Alasdair J. G. Gray et al. · 2014 · Lecture notes in computer science
- Identification of ZIP8-induced ferroptosis as a major type of cell death in monocytes under sepsis conditionsTong Zhang, Sheng Wang, Dongming Hua, Xuan Shi, Huimin Deng, Shuqing Jin, Xin Lv · 2023 · Redox Biology
- A Signaling Network of Thyroid-Stimulating HormoneRenu Goel, Rajesh Raju · 2011 · Journal of Proteomics & Bioinformatics
- SNPLogic: an interactive single nucleotide polymorphism selection, annotation, and prioritization systemAlexander R. Pico, Ivan V. Smirnov, Jeffrey Shu-Ming Chang, Ru‐Fang Yeh, Joseph Leo Wiemels, John K. Wiencke, Tarık Tihan, Bruce R. Conklin, Margaret Wrensch · 2008 · Nucleic Acids Research
- Metagenome Annotation Using a Distributed Grid of Undergraduate StudentsPascal Hingamp, Céline Brochier‐Armanet, Emmanuel Talla, Daniel Gautheret, Denis Thieffry, Carl Herrmann · 2008 · PLoS Biology
- Collagen Type I Improves the Differentiation of Human Embryonic Stem Cells towards Definitive EndodermCamilla Holzmann Rasmussen, Dorthe Roenn Petersen, Jonas Bech Moeller, Mattias D. Hansson, Martin Dufva · 2015 · PLoS ONE
- Detection of gene-environment interactions in the presence of linkage disequilibrium and noise by using genetic risk scores with internal weights from elastic net regressionAnke Hüls, Katja Ickstadt, Tamara Schikowski, Ursula Krämer · 2017 · BMC Genetics
- PAGER 2.0: an update to the pathway, annotated-list and gene-signature electronic repository for Human Network BiologyYue, Zongliang, Zheng, Qi, Neylon, Michael T, Yoo, Minjae, Shin, Jimin, Zhao, Zhiying, Tan, Aik Choon, Chen, Jake Y · 2018 · Nucleic Acids Research
- Computational systems biology approaches for Parkinson’s diseaseEnrico Glaab · 2017 · Cell and Tissue Research
- Rummagene: massive mining of gene sets from supporting materials of biomedical research publicationsDaniel J. B. Clarke, Giacomo B. Marino, Eden Z. Deng, Zhuorui Xie, John Erol Evangelista, Avi Ma’ayan · 2024 · Communications Biology
- A method for visualization of “omic” datasets for sphingolipid metabolism to predict potentially interesting differencesAmin A. Momin, Hye Jung Park, Brent J. Portz, Christopher A. Haynes, Rebecca L. Shaner, Samuel L. Kelly, I. King Jordan, Jr. Alfred H. Merrill · 2011 · Journal of Lipid Research
- Transcriptomic response of immune signalling pathways in intestinal epithelial cells exposed to lipopolysaccharides, Gram-negative bacteria or potentially probiotic microbesJulie Audy, O. Mathieu, Jocelyn Belvis, Thomas A. Tompkins · 2012 · Beneficial Microbes
- Gene Expression Profiling of Biological Pathway Alterations by Radiation ExposureKuei-Fang Lee, Julia Tzu-Ya Weng, Paul Wei-Che Hsu, Yu-Hsiang Chi, Ching-Kai Chen, Ingrid Y. Liu, Yi-Cheng Chen, Lawrence Shih-Hsin Wu · 2014 · BioMed Research International
- Nutrigenetics, Nutrigenomics, and SeleniumLynnette Robyn Ferguson, Nishi Karunasinghe · 2011 · Frontiers in Genetics
- Lin28a regulates neurogliogenesis in mammalian retina through the Igf signalingXiaohuan Xia, Pooja Teotia, Iqbal Ahmad · 2018 · Developmental Biology
- Transcriptomics predicts compound synergy in drug and natural product treated glioblastoma cellsLavinia-Lorena Pruteanu, Liliya Kopanitsa, Dezső Módos, Edgars Kletnieks, Elena I. Samarova, Andreas Bender, Leonardo Dario Gomez, David Stanley Bailey · 2020 · PLoS ONE
- Integrated analysis of SNP , CNV and gene expression data in genetic association studiesRana Momtaz, N.M. Ghanem, Nagwa El-Makky, Mohamed A. Ismail · 2017 · Clinical Genetics
- Comprehensive profiling of transcriptional networks specific for lactogenic differentiation of HC11 mammary epithelial stem-like cellsTrinadha Rao Sornapudi, Rakhee Nayak, Prashanth Kumar Guthikonda, Anil Kumar Pasupulati, Srinivas Kethavath, Vanita Uppada, Sukalpa Mondal, Sailu Yellaboina, Sreenivasulu Kurukuti · 2018 · Scientific Reports
- Systems analysis of avascular necrosis of femoral head using integrative data analysis and literature mining delineates pathways associated with diseaseAshwin Ashok Naik, Aswath Narayanan, Prakash Khanchandani, Divya Sridharan, Piruthivi Sukumar, Sai Krishna Srimadh Bhagavatham, Polani B. Seshagiri, Venketesh Sivaramakrishnan · 2020 · Scientific Reports
- NET-GE: a novel NETwork-based Gene Enrichment for detecting biological processes associated to Mendelian diseasesPietro Di Lena, Pier Luigi Martelli, Piero Fariselli, Rita Casadio · 2015 · BMC Genomics
- Integrating Omics Data for Signaling Pathways, Interactome Reconstruction, and Functional AnalysisPaolo Tieri, Alberto de la Fuente, Alberto Termanini, Claudio Franceschi · 2011 · Methods in molecular biology
- EviNet: a web platform for network enrichment analysis with flexible definition of gene setsAshwini Jeggari, Zhanna Alekseenko, Iurii Petrov, José Maria Moreira Dias, Johan Ericson, Andrey Alexeyenko · 2018 · Nucleic Acids Research
- Hypoxia sensing in resident cardiac macrophages regulates monocyte fate specification following ischemic heart injuryFarid F. Kadyrov, Andrew L. Koenig, Junedh Amrute, Hao Dun, Wenjun Li, Carla J. Weinheimer, Jessica M. Nigro, Attila Kovács, Andrea L. Bredemeyer, Steven Hoseong Yang et al. · 2024 · Nature Cardiovascular Research
- Facilitating the use of large-scale biological data and tools in the era of translational bioinformaticsIrene A. Kouskoumvekaki, Nour W Shublaq, Søren Brunak · 2013 · Briefings in Bioinformatics
- MicroRNA profiling reveals important functions of miR-125b and let-7a during human retinal pigment epithelial cell differentiationFatemeh Shahriari, Leila Satarian, Sharif Moradi, Ali Sharifi‐Zarchi, Stefan Günther, Aryan Kamal, Mehdi Totonchi, Seyed Javad Mowla, Thomas W Braun, Hossein Baharvand · 2019 · Experimental Eye Research
- Extracellular vesicles from mouse trophoblast cells: Effects on neural progenitor cells and potential participants in the placenta–brain axisJessica A. Kinkade, Arun Somwarpet Seetharam, Shrikesh Sachdev, Nathan J. Bivens, Brett S. Phinney, Gabriela Grigorean, R. Michael Roberts, Geetu Tuteja, Cheryl Susan Rosenfeld · 2023 · Biology of Reproduction
- Improving gene set enrichment analysis (GSEA) by using regulation directionalityBiwen Wang, Frans M. van der Kloet, Mariah B.M.J. Kes, Joen Luirink, Leendert Willem Hamoen · 2024 · Microbiology Spectrum
- Differential modulation of expression of nuclear receptor mediated genes by tris(2-butoxyethyl) phosphate (TBOEP) on early life stages of zebrafish (Danio rerio)Zhiyuan Ma, Yijun Yu, Song Tang, Hongling Liu, Guanyong Su, Yuwei Xie, John Paul Giesy, Markus Hecker, Hongxia Yu · 2015 · Aquatic Toxicology
- The Biological Connection Markup Language: a SBGN-compliant format for visualization, filtering and analysis of biological pathwaysLuca Beltrame, Enrica Calura, Razvan R. Popovici, Lisa Rizzetto, Damaríz Rivero, Michele Donato, Chiara Romualdi, Sorin Drăghici, Duccio Cavalieri · 2011 · Bioinformatics
- ChemPert: mapping between chemical perturbation and transcriptional response for non-cancer cellsMenglin Zheng, Satoshi Okawa, Miren Bravo, Fei Chen, Maria Luz Martínez‐Chantar, Antonio del Sol · 2022 · Nucleic Acids Research
- Systems Biology and Synthetic Biology: A New Epoch for Toxicology ResearchMark T. Mc Auley, Hyunok Choi, Kathleen M. Mooney, Emily Paul, Veronica M. Miller · 2015 · Advances in Toxicology
- Comparative modeling reveals the molecular determinants of aneuploidy fitness cost in a wild yeast modelRojas, Julie, Hose, James, Dutcher, H. Auguste, Place, Michael, Wolters, John F., Hittinger, Chris Todd, Gasch, Audrey P. · 2024 · Cell Genomics
- SignaLink: Multilayered Regulatory NetworksLuca Csabai, Marton L. Olbei, Aidan Budd, Tamas Douglas Korcsmaros, Dávid Fazekas · 2018 · Methods in molecular biology
- Autoimmune profiling with protein microarrays in clinical applicationsLaura Abel, Simone Kutschki, Michael Turewicz, Martin Eisenacher, Jale Stoutjesdijk, Helmut E. Meyer, Dirk Woitalla, Caroline May · 2014 · Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics
- Identifying Differentially Expressed Genes and Small Molecule Drugs for Prostate Cancer by a Bioinformatics StrategyJian Li, Yahong Xu, Yi Lu, Xiaoping Ma, Ping Chen, Shunwen Luo, Zhigang Jia, Yang Liu, Yu Amanda Guo · 2013 · Asian Pacific Journal of Cancer Prevention
- Induction of senescence in primary glioblastoma cells by serum and TGFβRitesh Kumar, Alexander Gont, Theodore J. Perkins, Jennifer E. L. Hanson, Ian A.J. Lorimer · 2017 · Scientific Reports
- New perspectives: systems medicine in cardiovascular diseaseFrank Krämer, Steffen Just, Tanja Zeller · 2018 · BMC Systems Biology
- Shared Biological Pathways Between Alzheimer’s Disease and Ischemic StrokePan Cui, Xiaofeng Ma, He Li, Wenjing Lang, Junwei Hao · 2018 · Frontiers in Neuroscience
- Data Processing, Metabolomic Databases and Pathway AnalysisOliver Fiehn, Tobias Kind, Dinesh Kumar Barupal · 2011 · Wiley eBooks
- Utilizing a structural meta-ontology for family-based quality assurance of the BioPortal ontologiesChristopher Ochs, Zhe He, Ling Zheng, James Geller, Yehoshua Perl, George M. Hripcsak, Mark A. Musen · 2016 · Journal of Biomedical Informatics
- Biological pathways as communicating computer systemsMarta Kwiatkowska, John K. Heath · 2009 · Journal of Cell Science
- The mEPN scheme: an intuitive and flexible graphical system for rendering biological pathwaysTom C. Freeman, Sobia Raza, Athanasios Theocharidis, Peter Ghazal · 2010 · BMC Systems Biology
- Integrative analysis of ultra-deep RNA-seq reveals alternative promoter usage as a mechanism of activating oncogenic programmes during prostate cancer progressionMeng Zhang, Martin Sjöström, Xiekui Cui, Adam Foye, Kyle Kai‐How Farh, Raunak Shrestha, Arian Lundberg, Ha X. Dang, Haolong Li, Phillip G. Febbo et al. · 2024 · Nature Cell Biology
- An experimentally validated approach to automated biological evidence generation in drug discovery using knowledge graphsSaatviga Sudhahar, Buğra Özer, Jiakang Chang, Wayne Chadwick, Daniel O’Donovan, Aoife Campbell, Emma Tulip, Neil T. Thompson, Ian Roberts · 2024 · Nature Communications
- Systems Biomedicine of Primary and Metastatic Colorectal Cancer Reveals Potential Therapeutic TargetsMehran Piran, Neda Sepahi, Afagh Moattari, Amir Rahimi, Ali Ghanbari Asad · 2021 · Frontiers in Oncology
- BOLD’s role in barcode data management and analysis: a responseSujeevan Ratnasingham, Paul D. N. Hebert · 2011 · Molecular Ecology Resources
- Academic opinions of Wikipedia and Open Access publishingLu Xiao, Nicole Askin · 2014 · Online Information Review
- Problems inherent to a meta-analysis of proteomics data: A case study on the plants' response to Cd in different cultivation conditionsJoke Dupae, Sacha Bohler, Jean‐Paul Noben, Sébastien Carpentier, Jaco Vangronsveld, Ann Cuypers · 2014 · Journal of Proteomics
- Exploring pathway interactions in insulin resistant mouse liverThomas Kelder, Lars Eijssen, Robert Kleemann, Marjan van Erk, Teake Kooistra, Chris T. Evelo · 2011 · BMC Systems Biology
- A molecular network map of orexin-orexin receptor signaling systemOishi Chatterjee, Lathika Gopalakrishnan, Deepshika Pulimamidi, Chinmayi Raj, Soujanya D. Yelamanchi, Bhavya Somalapura Gangadharappa, Bipin Gopalakrishnan Nair, Anita Mahadevan, Rajesh Raju, Thottethodi Subrahmanya Keshava Prasad · 2022 · Journal of Cell Communication and Signaling
- Hepatic transcriptome implications for palm fruit juice deterrence of type 2 diabetes mellitus in young male Nile ratsSoon-Sen Leow, Julia Bolsinger, Andrzej Prończuk, K. C. Hayes, Ravigadevi Sambanthamurthi · 2016 · Genes & Nutrition
- Genomic profiling screens small molecules of metastatic prostate carcinomaAxiang Xu, Shengkun Sun · 2015 · Oncology Letters
- Inhibition of Hedgehog signaling pathway impedes cancer cell proliferation by promotion of autophagyXiaoli Tang, Libin Deng, Qi Chen, Yao Wang, Rong Xu, Chao Shi, Jia Shao, Guohui Hu, Meng Gao, Hai Rao et al. · 2015 · European Journal of Cell Biology
- Epigenetic effects of paternal cocaine on reward stimulus behavior and accumbens gene expression in miceAlexandra M. Yaw, Rebecca A. Prosser, Piet C. Jones, Benjamin J. Garcia, Daniel Jacobson, J. David Glass · 2019 · Behavioural Brain Research
- Prader-Willi syndrome and Angelman syndrome: Visualisation of the molecular pathways for two chromosomal disordersFriederike Ehrhart, Kelly J. M. Janssen, Susan L. Coort, Chris T. Evelo, Leopold Curfs · 2018 · The World Journal of Biological Psychiatry
- WikiPathways for plants: a community pathway curation portal and a case study in rice and arabidopsis seed development networksMamatha Hanumappa, Justin Preece, Justin L. Elser, Denise Nemeth, Gina Bono, Kenny Wu, Pankaj Jaiswal · 2013 · Rice
- A highly multiplexed quantitative phosphosite assay for biology and preclinical studiesHasmik Keshishian, E. Robert McDonald, Filip Mundt, Randy Melanson, Karsten Krug, DALE A. PORTER, Luke Wallace, Dominique Forestier, Bokang Rabasha, Sara Marlow et al. · 2021 · Molecular Systems Biology
- A Chinese host genetic study discovered IFNs and causality of laboratory traits on COVID-19 severityHuanhuan Zhu, Fang Zheng, Linxuan Li, Yan Jin, Yuxue Luo, Zhen Li, Jingyu Zeng, Ling Fung Paul Tang, Zilong Li, Ningyu Xia et al. · 2021 · iScience
- TOPSAN: a collaborative annotation environment for structural genomicsDana Weekes, Sanjeev Krishna, Constantina Bakolitsa, Ian A. Wilson, Adam Godzik, John Wooley · 2010 · BMC Bioinformatics
- Genomic characterization of the HER2-enriched intrinsic molecular subtype in primary ER-positive HER2-negative breast cancerLennart Hohmann, K. Sigurjónsdóttir, Ana Bosch Campos, Deborah F. Nacer, Srinivas Veerla, Frida Rosengren, Poojaswini Thimmaraya Reddy, Jari Häkkinen, Nicklas Nordborg, Johan Vallon‐Christersson et al. · 2025 · Nature Communications
- Identification of common microRNA between COPD and non-small cell lung cancer through pathway enrichment analysisAmirhossein Fathinavid, Mohadeseh Zarei Ghobadi, Ali Najafi, Ali Masoudi‐Nejad · 2021 · BMC Genomic Data
- p53-dependent crosstalk between DNA replication integrity and redox metabolism mediated through a NRF2-PARP1 axisGamal Ahmed Elfar, Obed Akwasi Aning, Tsz Wai Ngai, Pearlyn Yeo, Joel Wai Kit Chan, Shang Hong Sim, Leonard Goh, Yuan Ju, Cheryl Zi Jin Phua, Joanna Zhen Zhen Yeo et al. · 2024 · Nucleic Acids Research
- Transcriptome analysis of Inbred Long Sleep and Inbred Short Sleep miceTodd M. Darlington, Marissa A. Ehringer, Christina M. Larson, Tzu Lip Phang, Richard A. Radcliffe · 2013 · Genes Brain & Behavior
- Toward an integrated software platform for systems pharmacologySamik Ghosh, Yukiko Matsuoka, Yoshiyuki Asai, Kun‐Yi Hsin, Hiroaki Kitano · 2013 · Biopharmaceutics & Drug Disposition
- MGV: a generic graph viewer for comparative omics dataStephan Symons, Kay Nieselt · 2011 · Bioinformatics
- Community-Reviewed Biological Network Models for Toxicology and Drug Discovery ApplicationsAishwarya Alex Namasivayam, Alejandro Ferreiro Morales, Ángela María Fajardo Lacave, Aravind Tallam, Borislav Simovic, David Garrido Alfaro, Dheeraj Reddy Bobbili, Florian Pierre Martin, Ganna Androsova, Irina Shvydchenko et al. · 2016 · Gene Regulation and Systems Biology
- Integrated in silico and in vivo approaches to investigate effects of BDE-99 mediated by the nuclear receptors on developing zebrafishLi Zhang, Yaru Jin, Zhihua Han, Hongling Liu, Laihao Shi, Xiaoxue Hua, Jon A. Doering, Song Tang, John Paul Giesy, Hongxia Yu · 2017 · Environmental Toxicology and Chemistry
- Identification of differentially expressed genes and small molecule drugs for the treatment of tendinopathy using microarray analysisXinyu Cai, Ming Cai, Lie-ming Lou · 2014 · Molecular Medicine Reports
- DeCoST: A New Approach in Drug Repurposing From Control System TheoryThanh Minh Nguyen, Syed Aun Muhammad, Sara Ibrahim‐Shaikh, Lin Ma, Jinlei Guo, Baogang Bai, Bixin Zeng · 2018 · Frontiers in Pharmacology